Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Forward (+)

16789353 .. 16790095

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGATGATCAAGAAGGATTTGGGAAGCTTGGAGGTGCGGGACAATGGCCACTTGCTACCAGAGATGCTGTTGAGGTGGGTGGAGGTGACCGGAAGATAAAGATCGGGAAGATCGACGACTTGTCGGCGAAGCAAGAGATGGTACGAGTGGTTTGGACACGAAAAAAGGTTGAGAATTCGGGGAGCCAAAGTCTCTCGAGTGGAAGCCAAGCATCGGGTCTTCACGGGGATCCCTCATTCTCTCGCTGGTTTGATGAAGATGGGAGAGTGCAAGGTGATTTGGTAAATGCGGATGCGACGGTAGAAGAAGACCACGAATTTGAATTGCCTCTCGCCCAACGGGGAGAGCTAGAATACAAGGGTTTAGATATGGACGAGGGACCGTATATCTCCAGGGGAAGCAAGCGCTTGAACAATGTGATACCTTTGGTAGTGCTACGGTCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

149

Amino Acids

16.28

Weight (kDa)

4.87

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	38, 290
AclWI	GGATC	2 cut(s)	224, 237
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	2 cut(s)	175, 317
AfaI	GTAC	1 cut(s)	144
AfeI	AGCGCT	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	323, 412
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	3 cut(s)	28, 349, 447
AluI	AGCT	3 cut(s)	28, 349, 447
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	2 cut(s)	224, 237
Ama87I	CYCGRG	1 cut(s)	196
Aor51HI	AGCGCT	1 cut(s)	407
AoxI	GGCC	1 cut(s)	47
ApoI	RAATTY	2 cut(s)	175, 317
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	380, 441
AsuHPI	GGTGA	2 cut(s)	98, 287
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	380, 441
BalI	TGGCCA	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	212, 315
BccI	CCATC	2 cut(s)	133, 254
BciT130I	CCWGG	1 cut(s)	394
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	2 cut(s)	350, 448
BfoI	RGCGCY	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	2 cut(s)	380, 441
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	380, 441
BmiI	GGNNCC	3 cut(s)	185, 231, 381
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	3 cut(s)	55, 221, 283
BpiI	GAAGAC	2 cut(s)	212, 315
BpmI	CTGGAG	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	2 cut(s)	10, 298
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	91
BslFI	GGGAC	2 cut(s)	54, 393
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	54, 393
BsnI	GGCC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	7, 102, 111, 229
BspACI	CCGC	2 cut(s)	38, 290
BspANI	GGCC	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	185, 231, 381
BspPI	GGATC	2 cut(s)	224, 237
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	4 cut(s)	7, 102, 111, 229
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	3 cut(s)	301, 384, 441
BstC8I	GCNNGC	1 cut(s)	404
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	10, 298
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	4 cut(s)	10, 105, 114, 232
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	7, 102, 111, 229
BstNI	CCWGG	1 cut(s)	394
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	392
BstV2I	GAAGAC	2 cut(s)	212, 315
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	10, 298
Cac8I	GCNNGC	1 cut(s)	404
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	380, 441
Csp6I	GTAC	1 cut(s)	143
CviJI	RGCY	6 cut(s)	28, 49, 186, 207, 349, 447
CviKI_1	RGCY	6 cut(s)	28, 49, 186, 207, 349, 447
CviQI	GTAC	1 cut(s)	143
DpnI	GATC	4 cut(s)	9, 104, 113, 231
DpnII	GATC	4 cut(s)	7, 102, 111, 229
DriI	GACNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	47
Eam1105I	GACNNNNNGTC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	380, 441
Eco47III	AGCGCT	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	196
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	392
FaiI	YATR	2 cut(s)	371, 387
FaqI	GGGAC	2 cut(s)	54, 393
FauI	CCCGC	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	17, 305
FspBI	CTAG	2 cut(s)	350, 448
GlaI	GCGC	1 cut(s)	407
GsuI	CTGGAG	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	409
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	91
HhaI	GCGC	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	26
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	2 cut(s)	98, 287
Hpy188III	TCNNGA	3 cut(s)	11, 106, 196
Hpy99I	CGWCG	2 cut(s)	119, 301
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	3 cut(s)	301, 384, 441
HpyCH4V	TGCA	1 cut(s)	271
HspAI	GCGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	7, 102, 111, 229
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	5 cut(s)	73, 104, 232, 379, 406
LweI	GCATC	3 cut(s)	55, 221, 283
MaeI	CTAG	2 cut(s)	350, 448
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	4 cut(s)	9, 104, 113, 231
MboI	GATC	4 cut(s)	7, 102, 111, 229
MboII	GAAGA	6 cut(s)	106, 121, 212, 269, 317, 320
MflI	RGATCY	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	3 cut(s)	175, 317, 323
MluNI	TGGCCA	1 cut(s)	49
MnlI	CCTC	6 cut(s)	26, 67, 77, 244, 339, 370
Mox20I	TGGCCA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	49
Msp20I	TGGCCA	1 cut(s)	49
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	394
NdeII	GATC	4 cut(s)	7, 102, 111, 229
NlaIV	GGNNCC	3 cut(s)	185, 231, 381
NmuCI	GTSAC	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	392
PspEI	GGTNACC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	185, 231, 381
PspPI	GGNCC	2 cut(s)	380, 441
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
Sau3AI	GATC	4 cut(s)	7, 102, 111, 229
Sau96I	GGNCC	2 cut(s)	380, 441
ScrFI	CCNGG	1 cut(s)	394
SetI	ASST	9 cut(s)	30, 37, 78, 88, 171, 277, 351, 427, 449
SfaNI	GCATC	3 cut(s)	55, 221, 283
Sfr274I	CTCGAG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	380, 441
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	3 cut(s)	175, 317, 323
SsiI	CCGC	2 cut(s)	38, 290
SspMI	CTAG	2 cut(s)	350, 448
StyD4I	CCNGG	1 cut(s)	392
TaaI	ACNGT	3 cut(s)	301, 384, 441
TaqI	TCGA	2 cut(s)	114, 197
TasI	AATT	3 cut(s)	175, 317, 323
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	270
VpaK11BI	GGWCC	2 cut(s)	380, 441
XapI	RAATTY	2 cut(s)	175, 317
XhoI	CTCGAG	1 cut(s)	196
XspI	CTAG	2 cut(s)	350, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.