Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006204

Physical Location & Seq

Genomic Coordinates Forward (+)

29376095 .. 29386947

Gene Structure 10853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1233800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGTAGGGAGTGATTTGACCACAAAAAAGGTCGGGTACACGGAAGCCAACTACGCTCAGAGTGGAAGCCACTCGTCAGGTCATCGCAGGGAGCCCTCATTCTCTCGCTGGTGCGATGAAGATGGGACGATGCATTTTGATCGTCTATTAGGAAATACGGATGCGGCTGCAGAAGAAGAGTCTGACTTTGAATTGCCAAAGCTCCAACAGGGTGAGCCAGCACACAATATTTTAGATAAGGACAAATACCACAATACAAAATCTCAGAAGAGAAATATGCACTTGAACGGTGGTGATACCATGGATTCTGCTGCTAACCAGGTTGGTGCAAACGGAAATGAGGAGTATTTGCCCTTTGATATCGAGAATGGGTCTGCAAGGGAGGCAAATGGTGTAGATAGCTTCATTTCTATGCATGACCATAAAGCATTACCACCCAATTTGGAGAACCCTATTACTCTTACAAATGTGTTGAAGACATTGTTCTTTGTACTTGTATGGTACACTTTCAGCCTGTTGTTGACCTTGTACAATAAAAGTCTGTTAGGAGATGATTTGGGGAAGTTCCCTGCTCCCTTTTTGATGAATACAGTTCATTTCACAATGCAAGCTGTTTTGTCAAAGGGAATCACATGGTTTTGGTCTAATAGATTCCAAACTGGTGTTGCTATGTCATGGAGAGATTACTTCGTGAAAGTTGTACCGACGGCTATTGGAACAGCAATGGATGTTAATCTAAGCAACGCATCCCTTGTTTTTATATCTGTCACATTTGCCACAATGTGTAAATCAGCTGCTCCTATATTTCTCCTTCTATTTGCTTTTGCTTTCAGATTGGAGTCACCAAGTGTTAGACTTTCAGGGATCATATTAATTATCTCCCTCGGAATACTATTAACAGTTGCAAAAGAGACAGAATTTGACTTTTGGGGATTCATTTTTGTCATGCTTGCTGCTGTAATGTCCGGCTTCCGTTGGTGCATGACCCAAATTCTTTTGCAGAAAGAAGATTATGGTTTGAGAAATCCGCTTACATTGATGAGCTATTTGACCCCAGTGATGGCAGTATTGACTGCCCTTCTCTCTCTTGCCTTTGATCCGTGGGATGAACTTAGAAAAAACAATTACTTCAACAATCCAGGGCATGTCGGTCGAAGTTGCTTGCTGATGCTTTTTGGTGGAACCCTTGCCTTTTTTATGGTATTAACAGAATTCATTCTTGTCTCCGTAACGAGTGCTGTCACAGTAACAATAGCAGGTGTTGTTAAGGAGGCTGTCACTATATTGGTTGCAGTCATTTACTTCCATGATGAATTTACCAGGTTGAAGGGAGCTGGACTCTTCATAATTATGCTTGGTGTTAGTTTATTCAACTGGTACAAATACGATAAGCTAAAGGCGCGTCATACAAGTGAAGATGACATGGAGGAACCAGTCTCGACAAATGTTGCTGCAAAGTATGTCATTCTTGAGGAGACAGATGAGCAAGATGATGGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

501

Amino Acids

55.94

Weight (kDa)

5.28

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	159 - 458	4.1e-28	Triose-phosphate Transporter family
UAA	PF08449	206 - 458	6.8e-10	UAA transporter family
EamA	PF00892	310 - 458	3.1e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06470 AT1G06470 AT1G06470 AT1G06470
fragaria_vesca	FvH4_6g27881 FvH4_6g27890
malus_domestica	MD09G1233800.v1.1 MD17G1230200.v1.1
prunus_persica	Prupe.3G108900_v2.0.a1 Prupe.3G108900_v2.0.a1
pyrus_communis	pycom09g15210 pycom09g15220 pycom17g23310
rosa_chinensis	RchiOBHm_Chr2g0131361
rosa_laevigata	RLG00000019180
rosa_multiflora	Rmu_ssc0000019.1_g000035
rosa_roxburghii	Rroxscaffold_2G00113060 Rroxscaffold_4G00296720 Rroxscaffold_4G00296730 Rroxscaffold_4G00296740
rosa_rugosa	Rorug02G0296000 Rorug02G0296100
rosa_samantha	Rh2AG349300 Rh2BG356300 Rh2CG335200 Rh2DG374200
rosa_wichuraiana	Rw2G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1247
Acc36I	ACCTGC	1 cut(s)	1247
AccII	CGCG	1 cut(s)	1402
AciI	CCGC	2 cut(s)	164, 1028
AclWI	GGATC	2 cut(s)	872, 1091
AcsI	RAATTY	4 cut(s)	917, 990, 1211, 1313
AdeI	CACNNNGTG	2 cut(s)	783, 848
AfaI	GTAC	6 cut(s)	38, 492, 503, 530, 702, 1379
AfiI	CCNNNNNNNGG	1 cut(s)	1060
AgsI	TTSAA	6 cut(s)	191, 286, 475, 1132, 1327, 1372
AjnI	CCWGG	3 cut(s)	318, 1138, 1319
AluBI	AGCT	7 cut(s)	202, 402, 611, 794, 1044, 1334, 1393
AluI	AGCT	7 cut(s)	202, 402, 611, 794, 1044, 1334, 1393
Alw26I	GTCTC	4 cut(s)	905, 1228, 1441, 1469
AlwI	GGATC	2 cut(s)	872, 1091
ApeKI	GCWGC	5 cut(s)	167, 311, 794, 953, 1451
ApoI	RAATTY	4 cut(s)	917, 990, 1211, 1313
AseI	ATTAAT	1 cut(s)	872
Asp700I	GAANNNNTTC	1 cut(s)	1215
AspLEI	GCGC	1 cut(s)	1402
AsuHPI	GGTGA	3 cut(s)	224, 305, 834
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	5 cut(s)	154, 298, 781, 940, 1438
BccI	CCATC	3 cut(s)	116, 1054, 1487
BceAI	ACGGC	1 cut(s)	723
BcgI	CGANNNNNNTGC	4 cut(s)	122, 156, 1133, 1167
BciT130I	CCWGG	3 cut(s)	320, 1140, 1321
BcoDI	GTCTC	4 cut(s)	905, 1228, 1441, 1469
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	1247
BisI	GCNGC	6 cut(s)	165, 168, 312, 795, 954, 1452
BlsI	GCNGC	6 cut(s)	166, 169, 313, 796, 955, 1453
Bme1390I	CCNGG	3 cut(s)	320, 1140, 1321
BmiI	GGNNCC	3 cut(s)	93, 1183, 1431
BmrFI	CCNGG	3 cut(s)	320, 1140, 1321
BmrI	ACTGGG	1 cut(s)	1049
BmsI	GCATC	4 cut(s)	120, 151, 755, 1158
BmuI	ACTGGG	1 cut(s)	1049
BpiI	GAAGAC	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	1323, 1355
BpuEI	CTTGAG	1 cut(s)	1490
BsaBI	GATNNNNATC	1 cut(s)	732
BsaJI	CCNNGG	4 cut(s)	300, 883, 1100, 1139
Bsc4I	CCNNNNNNNGG	1 cut(s)	1060
Bse1I	ACTGG	4 cut(s)	664, 1055, 1379, 1433
Bse3DI	GCAATG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	732
BseBI	CCWGG	3 cut(s)	320, 1140, 1321
BseDI	CCNNGG	4 cut(s)	300, 883, 1100, 1139
BseGI	GGATG	4 cut(s)	166, 733, 746, 1111
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	1 cut(s)	1060
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	2 cut(s)	71, 278
BseNI	ACTGG	4 cut(s)	664, 1055, 1379, 1433
BseRI	GAGGAG	2 cut(s)	356, 1487
BseXI	GCAGC	5 cut(s)	154, 298, 781, 940, 1438
Bsh1236I	CGCG	1 cut(s)	1402
Bsh1285I	CGRYCG	1 cut(s)	1153
BsiEI	CGRYCG	1 cut(s)	1153
BsiSI	CCGG	1 cut(s)	966
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	1060
BsmAI	GTCTC	4 cut(s)	905, 1228, 1441, 1469
BsmFI	GGGAC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	139, 864, 1096
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	2 cut(s)	164, 1028
BspCNI	CTCAG	2 cut(s)	70, 277
BspFNI	CGCG	1 cut(s)	1402
BspLI	GGNNCC	3 cut(s)	93, 1183, 1431
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	1247
BspPI	GGATC	2 cut(s)	872, 1091
BsrDI	GCAATG	1 cut(s)	729
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	4 cut(s)	664, 1055, 1379, 1433
BssECI	CCNNGG	4 cut(s)	300, 883, 1100, 1139
BssMI	GATC	3 cut(s)	139, 864, 1096
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	3 cut(s)	320, 1140, 1321
Bst4CI	ACNGT	4 cut(s)	290, 592, 901, 1246
Bst6I	CTCTTC	3 cut(s)	171, 263, 1346
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	4 cut(s)	219, 609, 951, 1163
BstDEI	CTNAG	4 cut(s)	57, 264, 737, 1112
BstDSI	CCRYGG	2 cut(s)	300, 1100
BstF5I	GGATG	4 cut(s)	166, 733, 746, 1111
BstFNI	CGCG	1 cut(s)	1402
BstHHI	GCGC	1 cut(s)	1402
BstKTI	GATC	3 cut(s)	142, 867, 1099
BstMAI	GTCTC	4 cut(s)	905, 1228, 1441, 1469
BstMBI	GATC	3 cut(s)	139, 864, 1096
BstMCI	CGRYCG	1 cut(s)	1153
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 383, 1399
BstNI	CCWGG	3 cut(s)	320, 1140, 1321
BstNSI	RCATGY	1 cut(s)	1148
BstSCI	CCNGG	3 cut(s)	318, 1138, 1319
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	1402
BstV1I	GCAGC	5 cut(s)	154, 298, 781, 940, 1438
BstV2I	GAAGAC	1 cut(s)	482
BtgI	CCRYGG	2 cut(s)	300, 1100
BtgZI	GCGATG	2 cut(s)	68, 129
BtsCI	GGATG	4 cut(s)	166, 733, 746, 1111
BtsIMutI	CAGTG	1 cut(s)	1062
BveI	ACCTGC	1 cut(s)	1247
Cac8I	GCNNGC	4 cut(s)	219, 609, 951, 1163
CfoI	GCGC	1 cut(s)	1402
CseI	GACGC	1 cut(s)	1391
CsiI	ACCWGGT	2 cut(s)	318, 1319
Csp6I	GTAC	6 cut(s)	37, 491, 502, 529, 701, 1378
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	9 cut(s)	301, 416, 633, 675, 946, 982, 1145, 1307, 1423
CviQI	GTAC	6 cut(s)	37, 491, 502, 529, 701, 1378
DdeI	CTNAG	4 cut(s)	57, 264, 737, 1112
DpnI	GATC	3 cut(s)	141, 866, 1098
DpnII	GATC	3 cut(s)	139, 864, 1096
DraIII	CACNNNGTG	2 cut(s)	783, 848
Eam1104I	CTCTTC	3 cut(s)	171, 263, 1346
EarI	CTCTTC	3 cut(s)	171, 263, 1346
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	96
Eco32I	GATATC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	1211
EcoRII	CCWGG	3 cut(s)	318, 1138, 1319
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	2 cut(s)	135, 417
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	9 cut(s)	304, 419, 636, 678, 949, 985, 1148, 1310, 1426
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	9 cut(s)	300, 415, 632, 674, 945, 981, 1144, 1306, 1422
Fnu4HI	GCNGC	6 cut(s)	165, 168, 312, 795, 954, 1452
FokI	GGATG	4 cut(s)	173, 733, 740, 1118
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	6 cut(s)	165, 168, 312, 795, 954, 1452
GlaI	GCGC	1 cut(s)	1401
GluI	GCNGC	6 cut(s)	165, 168, 312, 795, 954, 1452
HapII	CCGG	1 cut(s)	966
HgaI	GACGC	1 cut(s)	1391
HhaI	GCGC	1 cut(s)	1402
Hin1II	CATG	9 cut(s)	304, 419, 636, 678, 949, 985, 1148, 1310, 1426
Hin6I	GCGC	1 cut(s)	1400
HinP1I	GCGC	1 cut(s)	1400
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	7 cut(s)	179, 305, 627, 651, 839, 933, 1338
HpaII	CCGG	1 cut(s)	966
HphI	GGTGA	3 cut(s)	224, 305, 834
Hpy166II	GTNNAC	3 cut(s)	39, 504, 522
Hpy188I	TCNGA	5 cut(s)	60, 184, 267, 833, 887
Hpy188III	TCNNGA	4 cut(s)	364, 691, 1438, 1469
Hpy8I	GTNNAC	3 cut(s)	39, 504, 522
Hpy99I	CGWCG	1 cut(s)	709
HpyAV	CCTTC	3 cut(s)	821, 1088, 1321
HpyCH4III	ACNGT	4 cut(s)	290, 592, 901, 1246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 383, 1399
HpyF3I	CTNAG	4 cut(s)	57, 264, 737, 1112
Hsp92II	CATG	9 cut(s)	304, 419, 636, 678, 949, 985, 1148, 1310, 1426
HspAI	GCGC	1 cut(s)	1400
Kzo9I	GATC	3 cut(s)	139, 864, 1096
LmnI	GCTCC	5 cut(s)	91, 207, 577, 802, 1331
Lsp1109I	GCAGC	5 cut(s)	154, 298, 781, 940, 1438
LweI	GCATC	4 cut(s)	120, 151, 755, 1158
MabI	ACCWGGT	2 cut(s)	318, 1319
MaeIII	GTNAC	6 cut(s)	766, 840, 1228, 1240, 1246, 1276
MalI	GATC	3 cut(s)	141, 866, 1098
MboI	GATC	3 cut(s)	139, 864, 1096
MboII	GAAGA	8 cut(s)	131, 185, 188, 280, 487, 1019, 1333, 1427
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	9 cut(s)	191, 439, 873, 917, 990, 1123, 1211, 1313, 1347
MlyI	GAGTC	3 cut(s)	188, 848, 1332
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	7 cut(s)	106, 334, 376, 893, 1264, 1420, 1465
Mph1103I	ATGCAT	2 cut(s)	135, 417
MroXI	GAANNNNTTC	1 cut(s)	1215
MseI	TTAA	5 cut(s)	732, 872, 896, 1205, 1266
MslI	CAYNNNNRTG	3 cut(s)	410, 1349, 1410
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	1 cut(s)	966
MspR9I	CCNGG	3 cut(s)	320, 1140, 1321
MvaI	CCWGG	3 cut(s)	320, 1140, 1321
MvnI	CGCG	1 cut(s)	1402
MwoI	GCNNNNNNNGC	3 cut(s)	53, 383, 1399
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	3 cut(s)	139, 864, 1096
NlaIII	CATG	9 cut(s)	304, 419, 636, 678, 949, 985, 1148, 1310, 1426
NlaIV	GGNNCC	3 cut(s)	93, 1183, 1431
NmuCI	GTSAC	4 cut(s)	766, 840, 1240, 1276
NsiI	ATGCAT	2 cut(s)	135, 417
NspI	RCATGY	1 cut(s)	1148
PaqCI	CACCTGC	1 cut(s)	1247
PdmI	GAANNNNTTC	1 cut(s)	1215
PfeI	GAWTC	4 cut(s)	305, 627, 651, 933
PkrI	GCNGC	6 cut(s)	166, 169, 313, 796, 955, 1453
PleI	GAGTC	3 cut(s)	187, 847, 1332
PpsI	GAGTC	3 cut(s)	187, 847, 1332
PshBI	ATTAAT	1 cut(s)	872
Psp6I	CCWGG	3 cut(s)	318, 1138, 1319
PspGI	CCWGG	3 cut(s)	318, 1138, 1319
PspN4I	GGNNCC	3 cut(s)	93, 1183, 1431
PstI	CTGCAG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	6 cut(s)	38, 492, 503, 530, 702, 1379
RsaNI	GTAC	6 cut(s)	37, 491, 502, 529, 701, 1378
RseI	CAYNNNNRTG	3 cut(s)	410, 1349, 1410
SaqAI	TTAA	5 cut(s)	732, 872, 896, 1205, 1266
SatI	GCNGC	6 cut(s)	165, 168, 312, 795, 954, 1452
Sau3AI	GATC	3 cut(s)	139, 864, 1096
SchI	GAGTC	3 cut(s)	188, 848, 1332
ScrFI	CCNGG	3 cut(s)	320, 1140, 1321
SduI	GDGCHC	1 cut(s)	96
SexAI	ACCWGGT	2 cut(s)	318, 1319
SfaNI	GCATC	4 cut(s)	120, 151, 755, 1158
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	3 cut(s)	410, 1349, 1410
SmlI	CTYRAG	1 cut(s)	1469
SmoI	CTYRAG	1 cut(s)	1469
Sse9I	AATT	9 cut(s)	191, 439, 873, 917, 990, 1123, 1211, 1313, 1347
SsiI	CCGC	2 cut(s)	164, 1028
SspI	AATATT	1 cut(s)	229
StyD4I	CCNGG	3 cut(s)	318, 1138, 1319
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	4 cut(s)	290, 592, 901, 1246
TaqI	TCGA	3 cut(s)	363, 1153, 1439
TaqII	GACCGA	1 cut(s)	1139
TasI	AATT	9 cut(s)	191, 439, 873, 917, 990, 1123, 1211, 1313, 1347
TatI	WGTACW	2 cut(s)	490, 528
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	4 cut(s)	305, 627, 651, 933
Tru1I	TTAA	5 cut(s)	732, 872, 896, 1205, 1266
Tru9I	TTAA	5 cut(s)	732, 872, 896, 1205, 1266
TscAI	CASTG	1 cut(s)	1062
TseFI	GTSAC	4 cut(s)	766, 840, 1240, 1276
TseI	GCWGC	5 cut(s)	167, 311, 794, 953, 1451
Tsp45I	GTSAC	4 cut(s)	766, 840, 1240, 1276
TspDTI	ATGAA	9 cut(s)	132, 394, 584, 599, 925, 1122, 1204, 1326, 1333
TspGWI	ACGGA	6 cut(s)	56, 173, 348, 962, 1089, 1216
TspRI	CASTG	1 cut(s)	1062
VspI	ATTAAT	1 cut(s)	872
XapI	RAATTY	4 cut(s)	917, 990, 1211, 1313
XceI	RCATGY	1 cut(s)	1148
XmnI	GAANNNNTTC	1 cut(s)	1215
Zsp2I	ATGCAT	2 cut(s)	135, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.