Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Reverse (-)

2111323 .. 2114686

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAGCGAGGGCCAGAAGTTCCAGTTGGGAACAATCGGCGCTTTGAGTTTGTCCGTTGTGTCATCTGTCTCGATTGTGATCTGTAACAAAGCGCTTATTAGCACCCTTGGCTTCACATTCGCGACTACTTTGACAAGTTGGCATCTTTTGGTCACATTTTGTTCCCTTCATGTGGCATTATGGATGAAGATGTTCGAACACAAGCCTTTTGATCCACGAGCTGTGATGGGATTTGGCATATTGAATGGGATATCCATAGGACTATTGAACCTCAGCCTGGGCTTTAATTCTGTCGGTTTTTACCAGATGACTAAACTAGCTATCATCCCCTGCACTGTTCTCTTGGAGACCCTCTTCTTCAGGAAAAAGTTCAGTCGAAAAATCCAGTTTTCATTAACCATCCTTCTCCTTGGTGTTGGAATTGCAACCGTCACAGATCTTCAACTTAATATGCTGGGTTCTGTCTTGTCGCTGCTGGCTGTTGTCACAACTTGTGTTGCTCAAATTATGACAAATACCATCCAGAAGAAGTTCAAAGTTTCATCCACGCAGCTTCTGTATCAGTCTTGCCCATATCAAGCAATCACTCTTTTCGTCACTGGGCCATTTTTAGATGGGCTCCTAACCAATCAGAACGTGTTTGCTTTCAAGTACACTTCTCAAGTAGTGTTCTTCATCGTCCTGTCTTGCCTCATATCAGTCTCTGTAAACTTCAGCACATTTCTTGTCATTGGAAAAACATCTCCTGTCACATATCAGGTTCTAGGACATCTCAAAACATGCCTGGTTCTAGCATTTGGCTATGTGTTGCTGCGAGACCCATTCGACTGGCGCAACATTCTCGGTATTCTAGTGGCTGTGATTGGAATGGTTGTTTATTCCTATTACTGCTCGATTGAGACTCAGCAGAAGGCAAGTGAAACCTCAACTCAGTTGCCTCAGATGAAAGAGAGCGAGAAGGATCCGCTAATAGCAGCTGAAAATGGAAGCGGAGTGTTATCAGATGGCGGCGGGGGAGTGCAGCAAAAGACGGTGGCTCCTGTATGGAACTCAAATAAAGATTTTCAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

357

Amino Acids

39.04

Weight (kDa)

9.05

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 294	2.2e-18	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	122
AciI	CCGC	4 cut(s)	965, 990, 1008, 1011
AclWI	GGATC	3 cut(s)	206, 956, 969
AcuI	CTGAAG	2 cut(s)	343, 697
AfaI	GTAC	1 cut(s)	653
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	2 cut(s)	172, 277
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	6 cut(s)	244, 268, 443, 535, 649, 1067
AjnI	CCWGG	2 cut(s)	276, 783
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	4 cut(s)	221, 320, 553, 977
AluI	AGCT	4 cut(s)	221, 320, 553, 977
Alw26I	GTCTC	5 cut(s)	73, 341, 706, 810, 893
AlwI	GGATC	3 cut(s)	206, 956, 969
AlwNI	CAGNNNCTG	2 cut(s)	556, 704
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	2 cut(s)	10, 602
ApeKI	GCWGC	5 cut(s)	472, 550, 811, 974, 1021
Asp700I	GAANNNNTTC	3 cut(s)	191, 368, 530
AspLEI	GCGC	3 cut(s)	41, 94, 834
AspS9I	GGNCC	2 cut(s)	10, 602
AsuII	TTCGAA	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	961
BanII	GRGCYC	1 cut(s)	621
BauI	CACGAG	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	5 cut(s)	459, 562, 798, 986, 1033
BccI	CCATC	5 cut(s)	220, 407, 527, 608, 998
BcgI	CGANNNNNNTGC	2 cut(s)	823, 857
BciT130I	CCWGG	2 cut(s)	278, 785
BcoDI	GTCTC	5 cut(s)	73, 341, 706, 810, 893
BfaI	CTAG	4 cut(s)	317, 764, 791, 851
BfoI	RGCGCY	2 cut(s)	42, 95
BglII	AGATCT	1 cut(s)	436
BisI	GCNGC	6 cut(s)	473, 551, 812, 975, 1009, 1022
BlsI	GCNGC	6 cut(s)	474, 552, 813, 976, 1010, 1023
Bme1390I	CCNGG	2 cut(s)	278, 785
BmgT120I	GGNCC	2 cut(s)	10, 602
BmiI	GGNNCC	3 cut(s)	620, 963, 1038
BmrFI	CCNGG	2 cut(s)	278, 785
BmrI	ACTGGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	77
BsaI	GGTCTC	2 cut(s)	341, 810
BsaJI	CCNNGG	3 cut(s)	106, 277, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	1021, 1051
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 277
Bse1I	ACTGG	4 cut(s)	22, 385, 604, 833
Bse8I	GATNNNNATC	1 cut(s)	77
BseBI	CCWGG	2 cut(s)	278, 785
BseDI	CCNNGG	3 cut(s)	106, 277, 409
BseGI	GGATG	5 cut(s)	189, 324, 399, 519, 542
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	2 cut(s)	172, 277
BseMII	CTCAG	4 cut(s)	286, 917, 944, 953
BseNI	ACTGG	4 cut(s)	22, 385, 604, 833
BseXI	GCAGC	5 cut(s)	459, 562, 798, 986, 1033
BseYI	CCCAGC	1 cut(s)	454
BsgI	GTGCAG	2 cut(s)	316, 1040
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	12, 604
BslI	CCNNNNNNNGG	2 cut(s)	172, 277
BsmAI	GTCTC	5 cut(s)	73, 341, 706, 810, 893
BsnI	GGCC	2 cut(s)	12, 604
Bso31I	GGTCTC	2 cut(s)	341, 810
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	4 cut(s)	78, 211, 436, 961
Bsp68I	TCGCGA	1 cut(s)	122
BspACI	CCGC	4 cut(s)	965, 990, 1008, 1011
BspANI	GGCC	2 cut(s)	12, 604
BspCNI	CTCAG	4 cut(s)	285, 916, 943, 952
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	3 cut(s)	620, 963, 1038
BspPI	GGATC	3 cut(s)	206, 956, 969
BspT104I	TTCGAA	1 cut(s)	195
BspTNI	GGTCTC	2 cut(s)	341, 810
BsrI	ACTGG	4 cut(s)	22, 385, 604, 833
BssECI	CCNNGG	3 cut(s)	106, 277, 409
BssMI	GATC	4 cut(s)	78, 211, 436, 961
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	2 cut(s)	106, 409
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	278, 785
Bst4CI	ACNGT	3 cut(s)	337, 430, 1033
Bst6I	CTCTTC	1 cut(s)	359
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	4 cut(s)	272, 903, 930, 939
BstF5I	GGATG	5 cut(s)	189, 324, 399, 519, 542
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	2 cut(s)	42, 95
BstHHI	GCGC	3 cut(s)	41, 94, 834
BstKTI	GATC	4 cut(s)	81, 214, 439, 964
BstMAI	GTCTC	5 cut(s)	73, 341, 706, 810, 893
BstMBI	GATC	4 cut(s)	78, 211, 436, 961
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	2 cut(s)	278, 785
BstNSI	RCATGY	1 cut(s)	783
BstSCI	CCNGG	2 cut(s)	276, 783
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	5 cut(s)	459, 562, 798, 986, 1033
BstX2I	RGATCY	2 cut(s)	436, 961
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	2 cut(s)	436, 961
BsuRI	GGCC	2 cut(s)	12, 604
BtsCI	GGATG	5 cut(s)	189, 324, 399, 519, 542
BtsIMutI	CAGTG	2 cut(s)	333, 597
BtuMI	TCGCGA	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	477
CaiI	CAGNNNCTG	2 cut(s)	556, 704
CfoI	GCGC	3 cut(s)	41, 94, 834
Cfr13I	GGNCC	2 cut(s)	10, 602
Csp6I	GTAC	1 cut(s)	652
CviAII	CATG	2 cut(s)	170, 780
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	4 cut(s)	272, 903, 930, 939
DpnI	GATC	4 cut(s)	80, 213, 438, 963
DpnII	GATC	4 cut(s)	78, 211, 436, 961
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	106, 409
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	2 cut(s)	341, 810
Eco32I	GATATC	1 cut(s)	252
Eco47III	AGCGCT	1 cut(s)	93
Eco57I	CTGAAG	2 cut(s)	343, 697
EcoRII	CCWGG	2 cut(s)	276, 783
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	106, 409
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	2 cut(s)	106, 409
FaeI	CATG	2 cut(s)	173, 783
FatI	CATG	2 cut(s)	169, 779
FauI	CCCGC	1 cut(s)	1004
Fnu4HI	GCNGC	6 cut(s)	473, 551, 812, 975, 1009, 1022
FokI	GGATG	5 cut(s)	196, 311, 386, 506, 529
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	6 cut(s)	473, 551, 812, 975, 1009, 1022
FspBI	CTAG	4 cut(s)	317, 764, 791, 851
GlaI	GCGC	3 cut(s)	40, 93, 833
GluI	GCNGC	6 cut(s)	473, 551, 812, 975, 1009, 1022
GsaI	CCCAGC	1 cut(s)	458
HaeII	RGCGCY	2 cut(s)	42, 95
HaeIII	GGCC	2 cut(s)	12, 604
HhaI	GCGC	3 cut(s)	41, 94, 834
Hin1II	CATG	2 cut(s)	173, 783
Hin6I	GCGC	3 cut(s)	39, 92, 832
HinP1I	GCGC	3 cut(s)	39, 92, 832
HinfI	GANTC	1 cut(s)	901
Hpy166II	GTNNAC	2 cut(s)	654, 709
Hpy188I	TCNGA	3 cut(s)	633, 942, 1003
Hpy188III	TCNNGA	4 cut(s)	70, 121, 361, 523
Hpy8I	GTNNAC	2 cut(s)	654, 709
HpyAV	CCTTC	4 cut(s)	176, 413, 904, 952
HpyCH4III	ACNGT	3 cut(s)	337, 430, 1033
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	3 cut(s)	333, 425, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	4 cut(s)	272, 903, 930, 939
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	2 cut(s)	173, 783
HspAI	GCGC	3 cut(s)	39, 92, 832
Kzo9I	GATC	4 cut(s)	78, 211, 436, 961
LmnI	GCTCC	2 cut(s)	624, 1042
Lsp1109I	GCAGC	5 cut(s)	459, 562, 798, 986, 1033
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	4 cut(s)	317, 764, 791, 851
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	6 cut(s)	83, 151, 430, 484, 595, 748
MalI	GATC	4 cut(s)	80, 213, 438, 963
MboI	GATC	4 cut(s)	78, 211, 436, 961
MboII	GAAGA	6 cut(s)	199, 346, 349, 431, 538, 664
MflI	RGATCY	2 cut(s)	436, 961
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	3 cut(s)	286, 420, 504
MlyI	GAGTC	1 cut(s)	895
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	5 cut(s)	281, 362, 701, 934, 948
MroXI	GAANNNNTTC	3 cut(s)	191, 368, 530
MseI	TTAA	3 cut(s)	285, 395, 447
MspA1I	CMGCKG	1 cut(s)	977
MspR9I	CCNGG	2 cut(s)	278, 785
MvaI	CCWGG	2 cut(s)	278, 785
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	4 cut(s)	78, 211, 436, 961
NlaIII	CATG	2 cut(s)	173, 783
NlaIV	GGNNCC	3 cut(s)	620, 963, 1038
NmuCI	GTSAC	5 cut(s)	151, 430, 484, 595, 748
NruI	TCGCGA	1 cut(s)	122
NspI	RCATGY	1 cut(s)	783
NspV	TTCGAA	1 cut(s)	195
PdmI	GAANNNNTTC	3 cut(s)	191, 368, 530
PkrI	GCNGC	6 cut(s)	474, 552, 813, 976, 1010, 1023
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
Psp6I	CCWGG	2 cut(s)	276, 783
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	2 cut(s)	276, 783
PspN4I	GGNNCC	3 cut(s)	620, 963, 1038
PspPI	GGNCC	2 cut(s)	10, 602
PstNI	CAGNNNCTG	2 cut(s)	556, 704
PsuI	RGATCY	2 cut(s)	436, 961
PvuII	CAGCTG	1 cut(s)	977
RruI	TCGCGA	1 cut(s)	122
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
SaqAI	TTAA	3 cut(s)	285, 395, 447
SatI	GCNGC	6 cut(s)	473, 551, 812, 975, 1009, 1022
Sau3AI	GATC	4 cut(s)	78, 211, 436, 961
Sau96I	GGNCC	2 cut(s)	10, 602
SchI	GAGTC	1 cut(s)	895
ScrFI	CCNGG	2 cut(s)	278, 785
SduI	GDGCHC	1 cut(s)	621
SetI	ASST	8 cut(s)	223, 273, 322, 555, 639, 762, 926, 979
SfaNI	GCATC	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
Sse9I	AATT	3 cut(s)	286, 420, 504
SsiI	CCGC	4 cut(s)	965, 990, 1008, 1011
SspMI	CTAG	4 cut(s)	317, 764, 791, 851
StyD4I	CCNGG	2 cut(s)	276, 783
StyI	CCWWGG	2 cut(s)	106, 409
TaaI	ACNGT	3 cut(s)	337, 430, 1033
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	5 cut(s)	71, 195, 376, 825, 893
TasI	AATT	3 cut(s)	286, 420, 504
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	1 cut(s)	1011
Tru1I	TTAA	3 cut(s)	285, 395, 447
Tru9I	TTAA	3 cut(s)	285, 395, 447
TscAI	CASTG	2 cut(s)	340, 604
TseFI	GTSAC	5 cut(s)	151, 430, 484, 595, 748
TseI	GCWGC	5 cut(s)	472, 550, 811, 974, 1021
Tsp45I	GTSAC	5 cut(s)	151, 430, 484, 595, 748
TspDTI	ATGAA	6 cut(s)	158, 200, 381, 531, 664, 959
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	340, 604
XceI	RCATGY	1 cut(s)	783
XmnI	GAANNNNTTC	3 cut(s)	191, 368, 530
XspI	CTAG	4 cut(s)	317, 764, 791, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.