Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Forward (+)

4234156 .. 4237321

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1052900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGAGAGAACCAGAAGTTCCGGCTGGGGACCATTGGGGCTCTGAGTTTGTCGGTGGTGTCGTCGGTATCGATCGTGATTTGCAACAAGGCCCTTATTAGCACACTTGGTTTCACTTTTGCCACAACTTTGACAAGCTGGCATCTTCTGGTCACATTTTGTTCGCTTCATGTAGCGTTATGGATGAATTTTTTTGAACACAAACCTTTTGATGCTCGTTCTGTAATGGGATTTGGAATTCTTAATGGAATCTCTATAGGCCTTCTGAATCTTAGCTTGGGTTTCAATTCCGTTGGTTTTTACCAGATGACAAAACTGGCGATCATCCCCTGTACTGTTTTTCTGGAAACCCTTTTCTTTAAGAAGAAATTCAGTCGAAGTGTGCAGTTTTCACTCTCCATCCTTCTTTTGGGAGTTGGGGTTGCAACAGTGACGGATCTTCAGCTCAATGCTCTGGGTTCCTTTTTGTCCCTGCTGGCAGTTCTAACAACTTGTGTTGCTCAGATTATGACCAATACGATCCAGAAGAAGTTCAAAGTTTCATCAACCCAACTTCTGTACCAGTCTTGCCCCTATCAGGCAATAACGTTATTTGTCATCGGTCCATTTCTAGATGGATTTTTGACTAATCAAAATGTTTTTGCTTTTGCGTATACCCCTCAAGTGCTGTTCTTCATTGTTATGTCCTGCCTGATATCTGTCTCTGTGAACTTCAGTACATTTTTGGTTATTGGAAGGACGTCTGCAGTAACCTATCAGGTCCTTGGACATCTGAAAACGTGCCTTGTTTTGGCATTTGGTTACATTCTACTTCGCGATCCATTTAGCTGGCGCAACATTTTGGGGATATTGATTGCTATAGGCGGAATGGTGCTCTATTCTTATTATTGCACTCTCGAGAGCCAGCGGAAGGCTAATGAAGTATCCCAACAGTTACCCCAGACGAGAGAAAGTGAAGGTGATCCTTTATTAGGTGTGGAAAATGGAAGTGGGATGCTAGGGGACGATCTGAAAATTCCTGTATGGAAGAACAAGGACCTGCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

350

Amino Acids

38.42

Weight (kDa)

8.98

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 294	3.1e-18	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	743
AccI	GTMKAC	1 cut(s)	653
AccII	CGCG	1 cut(s)	816
AciI	CCGC	2 cut(s)	864, 907
AclI	AACGTT	1 cut(s)	587
AclWI	GGATC	4 cut(s)	444, 514, 812, 956
AcsI	RAATTY	4 cut(s)	187, 237, 368, 1014
AcuI	CTGAAG	2 cut(s)	425, 697
AcyI	GRCGYC	1 cut(s)	740
AfaI	GTAC	3 cut(s)	334, 560, 718
AfiI	CCNNNNNNNGG	5 cut(s)	409, 577, 790, 910, 971
AgsI	TTSAA	3 cut(s)	197, 286, 535
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	5 cut(s)	138, 276, 445, 828, 1046
AluI	AGCT	5 cut(s)	138, 276, 445, 828, 1046
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	1 cut(s)	706
AlwI	GGATC	4 cut(s)	444, 514, 812, 956
Ama87I	CYCGRG	1 cut(s)	896
AoxI	GGCC	2 cut(s)	90, 259
ApoI	RAATTY	4 cut(s)	187, 237, 368, 1014
Asp700I	GAANNNNTTC	2 cut(s)	368, 530
AspLEI	GCGC	1 cut(s)	834
AspS9I	GGNCC	5 cut(s)	30, 91, 602, 760, 1036
AsuHPI	GGTGA	1 cut(s)	971
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	4 cut(s)	30, 602, 760, 1036
BaeI	ACNNNNGTAYC	2 cut(s)	542, 575
BanII	GRGCYC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	876
BccI	CCATC	2 cut(s)	407, 608
BciVI	GTATCC	1 cut(s)	934
BcoDI	GTCTC	1 cut(s)	706
BfaI	CTAG	2 cut(s)	611, 998
BfmI	CTRYAG	3 cut(s)	255, 744, 858
BfuI	GTATCC	1 cut(s)	934
Bme18I	GGWCC	4 cut(s)	30, 602, 760, 1036
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	5 cut(s)	30, 91, 602, 760, 1036
BmiI	GGNNCC	2 cut(s)	31, 460
BmsI	GCATC	3 cut(s)	151, 202, 984
BpuEI	CTTGAG	1 cut(s)	645
Bsa29I	ATCGAT	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	740
BsaJI	CCNNGG	1 cut(s)	763
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	5 cut(s)	409, 577, 790, 910, 971
Bse1I	ACTGG	2 cut(s)	321, 562
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	763
BseGI	GGATG	4 cut(s)	189, 324, 399, 999
BseLI	CCNNNNNNNGG	5 cut(s)	409, 577, 790, 910, 971
BseMII	CTCAG	2 cut(s)	35, 515
BseNI	ACTGG	2 cut(s)	321, 562
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	816
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	92, 261
BshVI	ATCGAT	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	876
BsiHKCI	CYCGRG	1 cut(s)	896
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	3 cut(s)	43, 454, 1016
BslI	CCNNNNNNNGG	5 cut(s)	409, 577, 790, 910, 971
BsmAI	GTCTC	1 cut(s)	706
BsmFI	GGGAC	3 cut(s)	43, 454, 1016
BsnI	GGCC	2 cut(s)	92, 261
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	2 cut(s)	43, 876
Bsp143I	GATC	7 cut(s)	72, 321, 436, 519, 817, 961, 1006
Bsp68I	TCGCGA	1 cut(s)	816
BspACI	CCGC	2 cut(s)	864, 907
BspANI	GGCC	2 cut(s)	92, 261
BspCNI	CTCAG	2 cut(s)	36, 514
BspDI	ATCGAT	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	816
BspLI	GGNNCC	2 cut(s)	31, 460
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	4 cut(s)	444, 514, 812, 956
BsrI	ACTGG	2 cut(s)	321, 562
BssECI	CCNNGG	1 cut(s)	763
BssMI	GATC	7 cut(s)	72, 321, 436, 519, 817, 961, 1006
BssNAI	GTATAC	1 cut(s)	654
BssNI	GRCGYC	1 cut(s)	740
BssT1I	CCWWGG	1 cut(s)	763
Bst1107I	GTATAC	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	337, 430, 933
BstACI	GRCGYC	1 cut(s)	740
BstC8I	GCNNGC	5 cut(s)	140, 477, 830, 905, 1044
BstDEI	CTNAG	3 cut(s)	44, 272, 501
BstENI	CCTNNNNNAGG	1 cut(s)	969
BstF5I	GGATG	4 cut(s)	189, 324, 399, 999
BstFNI	CGCG	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	7 cut(s)	75, 324, 439, 522, 820, 964, 1009
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	7 cut(s)	72, 321, 436, 519, 817, 961, 1006
BstMCI	CGRYCG	1 cut(s)	75
BstSFI	CTRYAG	3 cut(s)	255, 744, 858
BstUI	CGCG	1 cut(s)	816
BstX2I	RGATCY	1 cut(s)	436
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	436
BstZ17I	GTATAC	1 cut(s)	654
Bsu15I	ATCGAT	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	2 cut(s)	92, 261
BsuTUI	ATCGAT	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	189, 324, 399, 999
BtsIMutI	CAGTG	1 cut(s)	435
BtuMI	TCGCGA	1 cut(s)	816
Cac8I	GCNNGC	5 cut(s)	140, 477, 830, 905, 1044
CfoI	GCGC	1 cut(s)	834
Cfr13I	GGNCC	5 cut(s)	30, 91, 602, 760, 1036
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	333, 559, 717
CviAII	CATG	1 cut(s)	170
CviQI	GTAC	3 cut(s)	333, 559, 717
DdeI	CTNAG	3 cut(s)	44, 272, 501
DpnI	GATC	7 cut(s)	74, 323, 438, 521, 819, 963, 1008
DpnII	GATC	7 cut(s)	72, 321, 436, 519, 817, 961, 1006
EciI	GGCGGA	1 cut(s)	879
Eco130I	CCWWGG	1 cut(s)	763
Eco147I	AGGCCT	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	696
Eco47I	GGWCC	4 cut(s)	30, 602, 760, 1036
Eco57I	CTGAAG	2 cut(s)	425, 697
Eco88I	CYCGRG	1 cut(s)	896
EcoNI	CCTNNNNNAGG	1 cut(s)	969
EcoO109I	RGGNCCY	3 cut(s)	91, 760, 1036
EcoRI	GAATTC	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	763
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	763
FaeI	CATG	1 cut(s)	173
FaiI	YATR	8 cut(s)	171, 181, 257, 509, 654, 683, 860, 1024
FaqI	GGGAC	3 cut(s)	43, 454, 1016
FatI	CATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	653
FokI	GGATG	4 cut(s)	196, 311, 386, 1006
FriOI	GRGCYC	1 cut(s)	43
FspBI	CTAG	2 cut(s)	611, 998
GlaI	GCGC	1 cut(s)	833
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	92, 261
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	834
Hin1I	GRCGYC	1 cut(s)	740
Hin1II	CATG	1 cut(s)	173
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HindIII	AAGCTT	1 cut(s)	1044
HinfI	GANTC	2 cut(s)	249, 268
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	971
Hpy166II	GTNNAC	2 cut(s)	654, 709
Hpy188I	TCNGA	5 cut(s)	45, 267, 504, 774, 1011
Hpy188III	TCNNGA	7 cut(s)	76, 344, 523, 611, 815, 896, 898
Hpy8I	GTNNAC	2 cut(s)	654, 709
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	5 cut(s)	272, 413, 729, 904, 950
HpyCH4III	ACNGT	3 cut(s)	337, 430, 933
HpyCH4IV	ACGT	3 cut(s)	587, 740, 779
HpyCH4V	TGCA	6 cut(s)	84, 385, 425, 746, 891, 1042
HpyF3I	CTNAG	3 cut(s)	44, 272, 501
HpySE526I	ACGT	3 cut(s)	587, 740, 779
Hsp92I	GRCGYC	1 cut(s)	740
Hsp92II	CATG	1 cut(s)	173
HspAI	GCGC	1 cut(s)	832
Kzo9I	GATC	7 cut(s)	72, 321, 436, 519, 817, 961, 1006
LweI	GCATC	3 cut(s)	151, 202, 984
MaeI	CTAG	2 cut(s)	611, 998
MaeII	ACGT	3 cut(s)	587, 740, 779
MaeIII	GTNAC	5 cut(s)	151, 430, 748, 800, 933
MalI	GATC	7 cut(s)	74, 323, 438, 521, 819, 963, 1008
MboI	GATC	7 cut(s)	72, 321, 436, 519, 817, 961, 1006
MboII	GAAGA	6 cut(s)	137, 376, 431, 538, 664, 1039
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	2 cut(s)	43, 876
MluCI	AATT	5 cut(s)	187, 237, 286, 368, 1014
MnlI	CCTC	1 cut(s)	669
MroXI	GAANNNNTTC	2 cut(s)	368, 530
MseI	TTAA	3 cut(s)	243, 360, 1048
MslI	CAYNNNNRTG	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	907
MspI	CCGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	816
NdeII	GATC	7 cut(s)	72, 321, 436, 519, 817, 961, 1006
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	2 cut(s)	31, 460
NmuCI	GTSAC	2 cut(s)	151, 430
NruI	TCGCGA	1 cut(s)	816
PaeR7I	CTCGAG	1 cut(s)	896
PceI	AGGCCT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 68
PdmI	GAANNNNTTC	2 cut(s)	368, 530
PfeI	GAWTC	2 cut(s)	249, 268
Ple19I	CGATCG	1 cut(s)	75
PpuMI	RGGWCCY	2 cut(s)	760, 1036
Psp1406I	AACGTT	1 cut(s)	587
Psp5II	RGGWCCY	2 cut(s)	760, 1036
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	31, 460
PspPI	GGNCC	5 cut(s)	30, 91, 602, 760, 1036
PspPPI	RGGWCCY	2 cut(s)	760, 1036
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	1 cut(s)	436
PvuI	CGATCG	1 cut(s)	75
RruI	TCGCGA	1 cut(s)	816
RsaI	GTAC	3 cut(s)	334, 560, 718
RsaNI	GTAC	3 cut(s)	333, 559, 717
RseI	CAYNNNNRTG	1 cut(s)	680
SaqAI	TTAA	3 cut(s)	243, 360, 1048
Sau3AI	GATC	7 cut(s)	72, 321, 436, 519, 817, 961, 1006
Sau96I	GGNCC	5 cut(s)	30, 91, 602, 760, 1036
SduI	GDGCHC	2 cut(s)	43, 876
SfaNI	GCATC	3 cut(s)	151, 202, 984
SfcI	CTRYAG	3 cut(s)	255, 744, 858
Sfr274I	CTCGAG	1 cut(s)	896
SinI	GGWCC	4 cut(s)	30, 602, 760, 1036
SlaI	CTCGAG	1 cut(s)	896
SmiMI	CAYNNNNRTG	1 cut(s)	680
SmlI	CTYRAG	2 cut(s)	660, 896
SmoI	CTYRAG	2 cut(s)	660, 896
Sse9I	AATT	5 cut(s)	187, 237, 286, 368, 1014
SseBI	AGGCCT	1 cut(s)	261
SsiI	CCGC	2 cut(s)	864, 907
SspMI	CTAG	2 cut(s)	611, 998
StuI	AGGCCT	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	763
TaaI	ACNGT	3 cut(s)	337, 430, 933
TaiI	ACGT	3 cut(s)	590, 743, 782
TaqI	TCGA	3 cut(s)	71, 376, 897
TaqII	GACCGA	1 cut(s)	590
TasI	AATT	5 cut(s)	187, 237, 286, 368, 1014
TatI	WGTACW	2 cut(s)	332, 716
TfiI	GAWTC	2 cut(s)	249, 268
Tru1I	TTAA	3 cut(s)	243, 360, 1048
Tru9I	TTAA	3 cut(s)	243, 360, 1048
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	2 cut(s)	151, 430
Tsp45I	GTSAC	2 cut(s)	151, 430
TspDTI	ATGAA	5 cut(s)	158, 200, 531, 664, 933
TspGWI	ACGGA	2 cut(s)	280, 449
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	4 cut(s)	30, 602, 760, 1036
XagI	CCTNNNNNAGG	1 cut(s)	969
XapI	RAATTY	4 cut(s)	187, 237, 368, 1014
XbaI	TCTAGA	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	896
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	2 cut(s)	368, 530
XspI	CTAG	2 cut(s)	611, 998
ZraI	GACGTC	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.