Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Forward (+)

4661482 .. 4664986

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1054700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTGGAAGATGGGAGAGAGCCCGAAGTTCCAGCTGGGAACCATTGGGGCTCTGAGTTTGTCGGTGGTGTCGTCGGTGTCAATCGTGATTTGCAACAAGGCGCTTATTAGCACACTTGGTTTCACTTTTGCCACAACTTTGACAAGCTGGCATCTTCTAGTCACATTTTGTTCGCTTCACGTAGCGTTATGGATGAAATTTTTTGAACACAAGCCTTTTGATGCTAGTTCTGTAATGGGATTTGGAATTCTTAATGGAATCTCTATTGGCCTTCTGAATCTTAGCTTGGGTTTCAATTCCGTTGGTTTTTACCAGATGACAAAACTGGCAATCATCCCTTGTACTGTTCTTCTGGAGACCCTTTTCTTTAAGAAGAAATTCAGTCGAAGTGTCCAGTTTTCACTCTCCATCCTTCTTTTGGGAGTTGGGGTTGCAACAGTGACGGATCTTCAACTCAATGCTCTGGGTTCTTTTTTGTCCCTGCTGGCAGTTTTAACAACCTGTGTTGCTCAGATTATGACCAATACCATCCAGAAGAAGTTCAAAGTTTCATCAACCCAACTTCTGTACCAATCTTGCCCCTATCAGGCAATAACGTTGTTTGTCATTGGTCCATTTCTAGATGGACTTTTGACTAATCAAAATGTTTTCTCATTTGCATATACCCCTCAAGTGCTGTTCTTCATTGTTCTGTCCTGCCTGATATCTGTCTCCGTAAACTTCAGTACATTTTTGGTTATTGGAAAGACGTCTGCAGTAACCTATCAGGTCCTTGGACATCTGAAAACATGCCTTGTTTTGGCATTTGGCTACATTCTACTTCGTGACCCATTTAGCTGGCGCAACATTTTGGGGATATTGATTGCTATAGTCGGGATGGTGCTCTATTCTTATTATTGCACTCTCGAGAGCCAGCGGAAGGCTAATGAAGTATCCCAACAGTTACCCCTGACGAGAGAAAGTGAAGGTGCTCAGTTATTAGGTGTGGAAAATGGAAATGGGAACGATCCTAAAATTCCTGTATGGAAGAACAAGGACCTACAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

350

Amino Acids

38.35

Weight (kDa)

9.15

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	24 - 297	3e-18	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	752
AciI	CCGC	1 cut(s)	916
AclI	AACGTT	1 cut(s)	596
AclWI	GGATC	2 cut(s)	453, 1001
AcsI	RAATTY	4 cut(s)	197, 246, 377, 1014
AcuI	CTGAAG	1 cut(s)	706
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	3 cut(s)	343, 569, 727
AfiI	CCNNNNNNNGG	4 cut(s)	418, 586, 799, 919
AgsI	TTSAA	4 cut(s)	206, 295, 452, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	5 cut(s)	34, 147, 285, 837, 1046
AluI	AGCT	5 cut(s)	34, 147, 285, 837, 1046
Alw21I	GWGCWC	2 cut(s)	885, 973
Alw26I	GTCTC	2 cut(s)	350, 715
AlwI	GGATC	2 cut(s)	453, 1001
Ama87I	CYCGRG	1 cut(s)	905
AoxI	GGCC	1 cut(s)	268
ApoI	RAATTY	4 cut(s)	197, 246, 377, 1014
Asp700I	GAANNNNTTC	2 cut(s)	377, 539
AspLEI	GCGC	2 cut(s)	103, 843
AspS9I	GGNCC	3 cut(s)	611, 769, 1036
AvaI	CYCGRG	1 cut(s)	905
AvaII	GGWCC	3 cut(s)	611, 769, 1036
BaeI	ACNNNNGTAYC	2 cut(s)	551, 584
BanII	GRGCYC	2 cut(s)	23, 52
Bbv12I	GWGCWC	2 cut(s)	885, 973
BccI	CCATC	5 cut(s)	4, 416, 536, 617, 871
BciVI	GTATCC	1 cut(s)	943
BcoDI	GTCTC	2 cut(s)	350, 715
BfaI	CTAG	3 cut(s)	158, 225, 620
BfmI	CTRYAG	2 cut(s)	753, 867
BfoI	RGCGCY	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	943
Bme18I	GGWCC	3 cut(s)	611, 769, 1036
BmeT110I	CYCGRG	1 cut(s)	905
BmgT120I	GGNCC	3 cut(s)	611, 769, 1036
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	2 cut(s)	160, 211
BpmI	CTGGAG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	181
BsaHI	GRCGYC	1 cut(s)	749
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	772
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	4 cut(s)	418, 586, 799, 919
Bse1I	ACTGG	2 cut(s)	330, 394
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	5 cut(s)	198, 333, 408, 528, 882
BseLI	CCNNNNNNNGG	4 cut(s)	418, 586, 799, 919
BseMII	CTCAG	3 cut(s)	44, 524, 986
BseNI	ACTGG	2 cut(s)	330, 394
BseYI	CCCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	2 cut(s)	885, 973
BsiHKCI	CYCGRG	1 cut(s)	905
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	418, 586, 799, 919
BsmAI	GTCTC	2 cut(s)	350, 715
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	905
Bsp1286I	GDGCHC	4 cut(s)	23, 52, 885, 973
Bsp143I	GATC	2 cut(s)	445, 1006
BspACI	CCGC	1 cut(s)	916
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	3 cut(s)	45, 523, 985
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	2 cut(s)	453, 1001
BspTNI	GGTCTC	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	330, 394
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	2 cut(s)	445, 1006
BssNI	GRCGYC	1 cut(s)	749
BssT1I	CCWWGG	1 cut(s)	772
Bst4CI	ACNGT	3 cut(s)	346, 439, 942
BstACI	GRCGYC	1 cut(s)	749
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	4 cut(s)	149, 486, 839, 914
BstDEI	CTNAG	4 cut(s)	53, 281, 510, 972
BstF5I	GGATG	5 cut(s)	198, 333, 408, 528, 882
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	103, 843
BstKTI	GATC	2 cut(s)	448, 1009
BstMAI	GTCTC	2 cut(s)	350, 715
BstMBI	GATC	2 cut(s)	445, 1006
BstNSI	RCATGY	1 cut(s)	792
BstSFI	CTRYAG	2 cut(s)	753, 867
BstX2I	RGATCY	1 cut(s)	445
BstXI	CCANNNNNNTGG	1 cut(s)	837
BstYI	RGATCY	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	943
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	5 cut(s)	198, 333, 408, 528, 882
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	4 cut(s)	149, 486, 839, 914
CfoI	GCGC	2 cut(s)	103, 843
Cfr13I	GGNCC	3 cut(s)	611, 769, 1036
Csp6I	GTAC	3 cut(s)	342, 568, 726
CviAII	CATG	1 cut(s)	789
CviQI	GTAC	3 cut(s)	342, 568, 726
DdeI	CTNAG	4 cut(s)	53, 281, 510, 972
DpnI	GATC	2 cut(s)	447, 1008
DpnII	GATC	2 cut(s)	445, 1006
Eco130I	CCWWGG	1 cut(s)	772
Eco24I	GRGCYC	2 cut(s)	23, 52
Eco31I	GGTCTC	1 cut(s)	350
Eco32I	GATATC	1 cut(s)	705
Eco47I	GGWCC	3 cut(s)	611, 769, 1036
Eco57I	CTGAAG	1 cut(s)	706
Eco88I	CYCGRG	1 cut(s)	905
EcoO109I	RGGNCCY	2 cut(s)	769, 1036
EcoRI	GAATTC	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	705
EcoT14I	CCWWGG	1 cut(s)	772
EcoT38I	GRGCYC	2 cut(s)	23, 52
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	1 cut(s)	792
FaiI	YATR	7 cut(s)	190, 518, 661, 663, 790, 869, 1024
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	1 cut(s)	788
FokI	GGATG	5 cut(s)	205, 320, 395, 515, 889
FriOI	GRGCYC	2 cut(s)	23, 52
FspBI	CTAG	3 cut(s)	158, 225, 620
GlaI	GCGC	2 cut(s)	102, 842
GsaI	CCCAGC	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	270
HhaI	GCGC	2 cut(s)	103, 843
Hin1I	GRCGYC	1 cut(s)	749
Hin1II	CATG	1 cut(s)	792
Hin6I	GCGC	2 cut(s)	101, 841
HinP1I	GCGC	2 cut(s)	101, 841
HindIII	AAGCTT	1 cut(s)	1044
HinfI	GANTC	2 cut(s)	258, 277
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	4 cut(s)	54, 276, 513, 783
Hpy188III	TCNNGA	8 cut(s)	85, 353, 532, 620, 824, 874, 905, 907
Hpy8I	GTNNAC	1 cut(s)	718
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	4 cut(s)	281, 422, 913, 959
HpyCH4III	ACNGT	3 cut(s)	346, 439, 942
HpyCH4IV	ACGT	3 cut(s)	180, 596, 749
HpyCH4V	TGCA	5 cut(s)	93, 434, 659, 755, 900
HpyF3I	CTNAG	4 cut(s)	53, 281, 510, 972
HpySE526I	ACGT	3 cut(s)	180, 596, 749
Hsp92I	GRCGYC	1 cut(s)	749
Hsp92II	CATG	1 cut(s)	792
HspAI	GCGC	2 cut(s)	101, 841
Kzo9I	GATC	2 cut(s)	445, 1006
LweI	GCATC	2 cut(s)	160, 211
MaeI	CTAG	3 cut(s)	158, 225, 620
MaeII	ACGT	3 cut(s)	180, 596, 749
MaeIII	GTNAC	5 cut(s)	160, 439, 757, 824, 942
MalI	GATC	2 cut(s)	447, 1008
MboI	GATC	2 cut(s)	445, 1006
MboII	GAAGA	8 cut(s)	19, 146, 341, 385, 440, 547, 673, 1039
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	4 cut(s)	23, 52, 885, 973
MluCI	AATT	5 cut(s)	197, 246, 295, 377, 1014
MnlI	CCTC	1 cut(s)	678
MroXI	GAANNNNTTC	2 cut(s)	377, 539
MseI	TTAA	4 cut(s)	252, 369, 494, 1048
MspA1I	CMGCKG	2 cut(s)	34, 916
NdeII	GATC	2 cut(s)	445, 1006
NlaIII	CATG	1 cut(s)	792
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	3 cut(s)	160, 439, 824
NspI	RCATGY	1 cut(s)	792
PaeR7I	CTCGAG	1 cut(s)	905
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PdmI	GAANNNNTTC	2 cut(s)	377, 539
PfeI	GAWTC	2 cut(s)	258, 277
Ppu21I	YACGTR	1 cut(s)	181
PpuMI	RGGWCCY	2 cut(s)	769, 1036
Psp1406I	AACGTT	1 cut(s)	596
Psp5II	RGGWCCY	2 cut(s)	769, 1036
PspFI	CCCAGC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	3 cut(s)	611, 769, 1036
PspPPI	RGGWCCY	2 cut(s)	769, 1036
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	3 cut(s)	343, 569, 727
RsaNI	GTAC	3 cut(s)	342, 568, 726
SaqAI	TTAA	4 cut(s)	252, 369, 494, 1048
Sau3AI	GATC	2 cut(s)	445, 1006
Sau96I	GGNCC	3 cut(s)	611, 769, 1036
SduI	GDGCHC	4 cut(s)	23, 52, 885, 973
SfaNI	GCATC	2 cut(s)	160, 211
SfcI	CTRYAG	2 cut(s)	753, 867
Sfr274I	CTCGAG	1 cut(s)	905
SinI	GGWCC	3 cut(s)	611, 769, 1036
SlaI	CTCGAG	1 cut(s)	905
SmlI	CTYRAG	2 cut(s)	669, 905
SmoI	CTYRAG	2 cut(s)	669, 905
Sse9I	AATT	5 cut(s)	197, 246, 295, 377, 1014
SsiI	CCGC	1 cut(s)	916
SspMI	CTAG	3 cut(s)	158, 225, 620
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	3 cut(s)	346, 439, 942
TaiI	ACGT	3 cut(s)	183, 599, 752
TaqI	TCGA	2 cut(s)	385, 906
TasI	AATT	5 cut(s)	197, 246, 295, 377, 1014
TatI	WGTACW	2 cut(s)	341, 725
TfiI	GAWTC	2 cut(s)	258, 277
Tru1I	TTAA	4 cut(s)	252, 369, 494, 1048
Tru9I	TTAA	4 cut(s)	252, 369, 494, 1048
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	3 cut(s)	160, 439, 824
Tsp45I	GTSAC	3 cut(s)	160, 439, 824
TspDTI	ATGAA	4 cut(s)	209, 540, 673, 942
TspGWI	ACGGA	3 cut(s)	289, 458, 703
TspRI	CASTG	1 cut(s)	444
VpaK11BI	GGWCC	3 cut(s)	611, 769, 1036
XapI	RAATTY	4 cut(s)	197, 246, 377, 1014
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	1 cut(s)	792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	905
XmnI	GAANNNNTTC	2 cut(s)	377, 539
XspI	CTAG	3 cut(s)	158, 225, 620
ZraI	GACGTC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.