Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Forward (+)

3103866 .. 3107904

Gene Structure 4039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G042100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGAGACAGCCAGAAGTTCCACCTGGGGACCATTGGGGCTTTGAGTTTGTCAGTCGTGTCATCCGTGTCAATTGTGATTTGCAACAAGGCGCTTATTAGCACACTTGGTTTCACTTTTGCCACAACTTTGACAAGCTGGCATCTTCTGGTCACATTTTGTTCTCTTCACATTGCATTATGGATGAAATTCTTCGAACACAAACCTTTTGATGCTAGTTCTGTAATGGGATTCGGAATTCTAAATGGAATCTCAATTGGACTTCTGAATCTGAGCTTGGGTTTCAATTCCGTTGGTTTTTACCAGATGACAAAACTGGCAATCATCCCTTGTACTGTTCTTTTGGAGACCCTTTTCTTTAGGAAGAAGTTCAGTCGAAGTGTTCAGTTTTCACTCACCATCCTTATTTTGGGAGTTGGAGTTGCAACAGTGACTGATCTTCAGCTCAATGCCCTGGGCTCCTTTTTGTCCCTGCTTGCAGTTCTCACAACATGTGTTGCTCAGATTATGACCAATACCATCCAGAAGAAGTTCAAAGTGTCCTCAACCCAACTTTTGTATCAGTCTTGTCCCTATCAAGCAATAACCTTGTTCATCGTTGGTCCATTTCTAGATGGACTTTTGACTAATCAAAATGTTTTTGCTTTCGCATATACCCCTCAAGTGCTGTTCTTCATTGTTCTGTCCTGCCTGATATCTGTCTCTGTAAACTTCAGTACATTTTTGGTTATTGGAAAGACGTCTGCAGTAACCTATCAGGTCCTTGGACATTTGAAAACATGCCTTGTTTTGGCATTTGGCTACATTCTACTCCGTGACCCATTTAGCTGGCGCAACATTTTAGGGATATTGATTGCTGTAGTTGGGATGGTACTCTATTCTTATTATTGCACTCTCGAGAGCCAGCGGAAGGCTAATGAAGGATCCCAACAGTTGCCCCAGACAAAAGAAAGCGAAGTTGATCCTCTATTAGGTGTCGAAAACGGTAGTGGGATGCTAGGGGAGGATTCAAAAGTCCCTGTATGGAATTCGAACAAGGACCTGCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

351

Amino Acids

38.3

Weight (kDa)

8.72

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	743
AciI	CCGC	1 cut(s)	907
AclWI	GGATC	3 cut(s)	918, 931, 956
AcsI	RAATTY	3 cut(s)	188, 237, 1027
AcuI	CTGAAG	2 cut(s)	425, 697
AcyI	GRCGYC	1 cut(s)	740
AfaI	GTAC	3 cut(s)	334, 718, 873
AfiI	CCNNNNNNNGG	4 cut(s)	409, 790, 910, 971
AflIII	ACRYGT	1 cut(s)	491
AgsI	TTSAA	4 cut(s)	286, 535, 775, 1011
AjnI	CCWGG	2 cut(s)	24, 453
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	4 cut(s)	138, 276, 445, 828
AluI	AGCT	4 cut(s)	138, 276, 445, 828
Alw26I	GTCTC	2 cut(s)	341, 706
AlwI	GGATC	3 cut(s)	918, 931, 956
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	896
ApoI	RAATTY	3 cut(s)	188, 237, 1027
Asp700I	GAANNNNTTC	3 cut(s)	191, 368, 530
AspLEI	GCGC	2 cut(s)	94, 834
AspS9I	GGNCC	4 cut(s)	30, 602, 760, 1039
AsuHPI	GGTGA	1 cut(s)	388
AsuII	TTCGAA	2 cut(s)	195, 1031
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	4 cut(s)	30, 602, 760, 1039
BaeI	ACNNNNGTAYC	2 cut(s)	542, 575
BamHI	GGATCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	461
BccI	CCATC	4 cut(s)	407, 527, 608, 862
BciT130I	CCWGG	2 cut(s)	26, 455
BcoDI	GTCTC	2 cut(s)	341, 706
BfaI	CTAG	3 cut(s)	216, 611, 998
BfmI	CTRYAG	2 cut(s)	744, 858
BfoI	RGCGCY	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	26, 455
Bme18I	GGWCC	4 cut(s)	30, 602, 760, 1039
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	4 cut(s)	30, 602, 760, 1039
BmiI	GGNNCC	3 cut(s)	31, 460, 925
BmrFI	CCNGG	2 cut(s)	26, 455
BmsI	GCATC	3 cut(s)	151, 202, 984
Bpu14I	TTCGAA	2 cut(s)	195, 1031
BpuEI	CTTGAG	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	740
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	4 cut(s)	25, 453, 454, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	4 cut(s)	409, 790, 910, 971
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	26, 455
BseDI	CCNNGG	4 cut(s)	25, 453, 454, 763
BseGI	GGATG	7 cut(s)	62, 189, 324, 399, 519, 873, 999
BseLI	CCNNNNNNNGG	4 cut(s)	409, 790, 910, 971
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	263, 515
BseNI	ACTGG	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	896
BslFI	GGGAC	4 cut(s)	43, 454, 555, 1001
BslI	CCNNNNNNNGG	4 cut(s)	409, 790, 910, 971
BsmAI	GTCTC	2 cut(s)	341, 706
BsmFI	GGGAC	4 cut(s)	43, 454, 555, 1001
Bso31I	GGTCTC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	896
Bsp119I	TTCGAA	2 cut(s)	195, 1031
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	3 cut(s)	436, 923, 961
BspACI	CCGC	1 cut(s)	907
BspCNI	CTCAG	2 cut(s)	264, 514
BspLI	GGNNCC	3 cut(s)	31, 460, 925
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	3 cut(s)	918, 931, 956
BspT104I	TTCGAA	2 cut(s)	195, 1031
BspTNI	GGTCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	4 cut(s)	25, 453, 454, 763
BssMI	GATC	3 cut(s)	436, 923, 961
BssNI	GRCGYC	1 cut(s)	740
BssT1I	CCWWGG	1 cut(s)	763
Bst2UI	CCWGG	2 cut(s)	26, 455
Bst4CI	ACNGT	4 cut(s)	337, 430, 933, 986
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	740
BstBI	TTCGAA	2 cut(s)	195, 1031
BstC8I	GCNNGC	5 cut(s)	140, 477, 830, 905, 1047
BstDEI	CTNAG	2 cut(s)	272, 501
BstENI	CCTNNNNNAGG	1 cut(s)	969
BstF5I	GGATG	7 cut(s)	62, 189, 324, 399, 519, 873, 999
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	94, 834
BstKTI	GATC	3 cut(s)	439, 926, 964
BstMAI	GTCTC	2 cut(s)	341, 706
BstMBI	GATC	3 cut(s)	436, 923, 961
BstNI	CCWGG	2 cut(s)	26, 455
BstNSI	RCATGY	3 cut(s)	495, 783, 1049
BstSCI	CCNGG	2 cut(s)	24, 453
BstSFI	CTRYAG	2 cut(s)	744, 858
BstX2I	RGATCY	1 cut(s)	923
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	923
BtsCI	GGATG	7 cut(s)	62, 189, 324, 399, 519, 873, 999
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	5 cut(s)	140, 477, 830, 905, 1047
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	2 cut(s)	94, 834
Cfr13I	GGNCC	4 cut(s)	30, 602, 760, 1039
Csp6I	GTAC	3 cut(s)	333, 717, 872
CviAII	CATG	3 cut(s)	492, 780, 1046
CviQI	GTAC	3 cut(s)	333, 717, 872
DdeI	CTNAG	2 cut(s)	272, 501
DpnI	GATC	3 cut(s)	438, 925, 963
DpnII	GATC	3 cut(s)	436, 923, 961
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	763
Eco24I	GRGCYC	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	696
Eco47I	GGWCC	4 cut(s)	30, 602, 760, 1039
Eco57I	CTGAAG	2 cut(s)	425, 697
Eco88I	CYCGRG	1 cut(s)	896
EcoNI	CCTNNNNNAGG	1 cut(s)	969
EcoO109I	RGGNCCY	2 cut(s)	760, 1039
EcoRI	GAATTC	2 cut(s)	237, 1027
EcoRII	CCWGG	2 cut(s)	24, 453
EcoRV	GATATC	1 cut(s)	696
EcoT14I	CCWWGG	1 cut(s)	763
EcoT38I	GRGCYC	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	763
FaeI	CATG	3 cut(s)	495, 783, 1049
FaiI	YATR	8 cut(s)	181, 493, 509, 652, 654, 781, 1024, 1047
FaqI	GGGAC	4 cut(s)	43, 454, 555, 1001
FatI	CATG	3 cut(s)	491, 779, 1045
FokI	GGATG	7 cut(s)	49, 196, 311, 386, 506, 880, 1006
FriOI	GRGCYC	1 cut(s)	461
FspBI	CTAG	3 cut(s)	216, 611, 998
GlaI	GCGC	2 cut(s)	93, 833
HaeII	RGCGCY	1 cut(s)	95
HhaI	GCGC	2 cut(s)	94, 834
Hin1I	GRCGYC	1 cut(s)	740
Hin1II	CATG	3 cut(s)	495, 783, 1049
Hin6I	GCGC	2 cut(s)	92, 832
HinP1I	GCGC	2 cut(s)	92, 832
HinfI	GANTC	4 cut(s)	231, 249, 268, 1007
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	4 cut(s)	236, 267, 273, 504
Hpy188III	TCNNGA	4 cut(s)	523, 611, 896, 898
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	2 cut(s)	904, 914
HpyCH4III	ACNGT	4 cut(s)	337, 430, 933, 986
HpyCH4IV	ACGT	1 cut(s)	740
HpyCH4V	TGCA	7 cut(s)	84, 176, 425, 479, 746, 891, 1045
HpyF3I	CTNAG	2 cut(s)	272, 501
HpySE526I	ACGT	1 cut(s)	740
Hsp92I	GRCGYC	1 cut(s)	740
Hsp92II	CATG	3 cut(s)	495, 783, 1049
HspAI	GCGC	2 cut(s)	92, 832
Kzo9I	GATC	3 cut(s)	436, 923, 961
LmnI	GCTCC	1 cut(s)	464
LweI	GCATC	3 cut(s)	151, 202, 984
MaeI	CTAG	3 cut(s)	216, 611, 998
MaeII	ACGT	1 cut(s)	740
MaeIII	GTNAC	4 cut(s)	151, 430, 748, 815
MalI	GATC	3 cut(s)	438, 925, 963
MboI	GATC	3 cut(s)	436, 923, 961
MboII	GAAGA	7 cut(s)	137, 158, 184, 376, 431, 538, 664
MfeI	CAATTG	2 cut(s)	72, 255
MflI	RGATCY	1 cut(s)	923
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	6 cut(s)	72, 188, 237, 255, 286, 1027
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	553, 669, 975, 997
MroXI	GAANNNNTTC	3 cut(s)	191, 368, 530
MseI	TTAA	1 cut(s)	1051
MspA1I	CMGCKG	1 cut(s)	907
MspR9I	CCNGG	2 cut(s)	26, 455
MunI	CAATTG	2 cut(s)	72, 255
MvaI	CCWGG	2 cut(s)	26, 455
NdeII	GATC	3 cut(s)	436, 923, 961
NlaIII	CATG	3 cut(s)	495, 783, 1049
NlaIV	GGNNCC	3 cut(s)	31, 460, 925
NmuCI	GTSAC	3 cut(s)	151, 430, 815
NspI	RCATGY	3 cut(s)	495, 783, 1049
NspV	TTCGAA	2 cut(s)	195, 1031
PaeI	GCATGC	1 cut(s)	1049
PaeR7I	CTCGAG	1 cut(s)	896
PasI	CCCWGGG	1 cut(s)	454
PciI	ACATGT	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdmI	GAANNNNTTC	3 cut(s)	191, 368, 530
PfeI	GAWTC	4 cut(s)	231, 249, 268, 1007
PpuMI	RGGWCCY	2 cut(s)	760, 1039
PscI	ACATGT	1 cut(s)	491
Psp5II	RGGWCCY	2 cut(s)	760, 1039
Psp6I	CCWGG	2 cut(s)	24, 453
PspGI	CCWGG	2 cut(s)	24, 453
PspN4I	GGNNCC	3 cut(s)	31, 460, 925
PspPI	GGNCC	4 cut(s)	30, 602, 760, 1039
PspPPI	RGGWCCY	2 cut(s)	760, 1039
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	923
RsaI	GTAC	3 cut(s)	334, 718, 873
RsaNI	GTAC	3 cut(s)	333, 717, 872
SaqAI	TTAA	1 cut(s)	1051
Sau3AI	GATC	3 cut(s)	436, 923, 961
Sau96I	GGNCC	4 cut(s)	30, 602, 760, 1039
ScrFI	CCNGG	2 cut(s)	26, 455
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	3 cut(s)	151, 202, 984
SfcI	CTRYAG	2 cut(s)	744, 858
Sfr274I	CTCGAG	1 cut(s)	896
SfuI	TTCGAA	2 cut(s)	195, 1031
SinI	GGWCC	4 cut(s)	30, 602, 760, 1039
SlaI	CTCGAG	1 cut(s)	896
SmlI	CTYRAG	2 cut(s)	660, 896
SmoI	CTYRAG	2 cut(s)	660, 896
SphI	GCATGC	1 cut(s)	1049
Sse9I	AATT	6 cut(s)	72, 188, 237, 255, 286, 1027
SsiI	CCGC	1 cut(s)	907
SspMI	CTAG	3 cut(s)	216, 611, 998
StyD4I	CCNGG	2 cut(s)	24, 453
StyI	CCWWGG	1 cut(s)	763
TaaI	ACNGT	4 cut(s)	337, 430, 933, 986
TaiI	ACGT	1 cut(s)	743
TaqI	TCGA	5 cut(s)	195, 376, 897, 978, 1031
TasI	AATT	6 cut(s)	72, 188, 237, 255, 286, 1027
TatI	WGTACW	2 cut(s)	332, 716
TfiI	GAWTC	4 cut(s)	231, 249, 268, 1007
Tru1I	TTAA	1 cut(s)	1051
Tru9I	TTAA	1 cut(s)	1051
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	3 cut(s)	151, 430, 815
Tsp45I	GTSAC	3 cut(s)	151, 430, 815
TspDTI	ATGAA	4 cut(s)	200, 583, 664, 933
TspGWI	ACGGA	3 cut(s)	55, 280, 803
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	4 cut(s)	30, 602, 760, 1039
XagI	CCTNNNNNAGG	1 cut(s)	969
XapI	RAATTY	3 cut(s)	188, 237, 1027
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	3 cut(s)	495, 783, 1049
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	896
XmnI	GAANNNNTTC	3 cut(s)	191, 368, 530
XspI	CTAG	3 cut(s)	216, 611, 998
ZraI	GACGTC	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.