Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042688.1

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Reverse (-)

1065 .. 2776

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042688.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgtttgaacacaagccttttgatgctagttctgtaatgagttttggaattttaaatggaatctctattggacttctgaatctcagcctgggtttcaattctgttggtttctaccagatgacaaaactagcaatcattccttgtactgttcttttggagacccttttctttaggaagaaattcagccgaagtatccagttttcactcagcatccttcttatgggcgttggggttgcaacagtgactgatctgcagctcaatgccctgggttcttttttgtccctgctggcagttattacaacctgtgttgctcagattatgaccaataccatccagaagaagttcaaagtttcttcaacccaacttctgtatcagtcttgcccttatcaggcaataaccttgtttatcattggtccatttctagatggatttctgactaatcaaaatgtttttgccttcgaatataccccgcaagtgctgttcttcattgttctatcctgcctgatatctgtctctgtaaacttcagtacgtttttggttattggaaagacgtctgcggtaacctatcaggtccttggacatttgaaaacatgccttgttttgacatttggctacactctacttcacgacccatttgactggcgcaacattttagggatattgattgccgtgctcggaatggtactctattcttattattgctctcgtgagagccagcggaaggctagtgaagcatctcaacagttgcctcagacaaaggagagtgaagcggatcctttattagcaatggaaaatggaactgggatgctaggggaggatggtgctgttcagaaaggccctgtgtggaattcgaacaaggacctacatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

290

Amino Acids

31.97

Weight (kDa)

7.59

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	554
AciI	CCGC	4 cut(s)	470, 557, 718, 770
AclWI	GGATC	2 cut(s)	767, 780
AcsI	RAATTY	3 cut(s)	48, 179, 847
AcuI	CTGAAG	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	551
AfaI	GTAC	3 cut(s)	145, 529, 684
AfiI	CCNNNNNNNGG	3 cut(s)	220, 388, 721
AgsI	TTSAA	5 cut(s)	8, 97, 346, 357, 586
AjnI	CCWGG	2 cut(s)	87, 264
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	2 cut(s)	152, 517
AlwI	GGATC	2 cut(s)	767, 780
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	835
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	3 cut(s)	48, 179, 847
Asp700I	GAANNNNTTC	2 cut(s)	179, 341
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	4 cut(s)	413, 571, 836, 859
AsuII	TTCGAA	2 cut(s)	459, 851
AvaII	GGWCC	3 cut(s)	413, 571, 859
BaeI	ACNNNNGTAYC	2 cut(s)	353, 386
BamHI	GGATCC	1 cut(s)	772
BauI	CACGAG	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	3 cut(s)	338, 419, 812
BceAI	ACGGC	1 cut(s)	653
BciT130I	CCWGG	2 cut(s)	89, 266
BciVI	GTATCC	1 cut(s)	203
BcoDI	GTCTC	2 cut(s)	152, 517
BfaI	CTAG	5 cut(s)	27, 128, 422, 726, 809
BfmI	CTRYAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	2 cut(s)	89, 266
Bme18I	GGWCC	3 cut(s)	413, 571, 859
BmgT120I	GGNCC	4 cut(s)	413, 571, 836, 859
BmiI	GGNNCC	1 cut(s)	774
BmrFI	CCNGG	2 cut(s)	89, 266
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	4 cut(s)	13, 219, 743, 795
BmuI	ACTGGG	1 cut(s)	810
Bpu14I	TTCGAA	2 cut(s)	459, 851
BsaHI	GRCGYC	1 cut(s)	551
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	88, 264, 265, 574
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 388, 721
Bse1I	ACTGG	3 cut(s)	196, 644, 805
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	2 cut(s)	89, 266
BseDI	CCNNGG	4 cut(s)	88, 264, 265, 574
BseGI	GGATG	4 cut(s)	210, 330, 810, 823
BseLI	CCNNNNNNNGG	3 cut(s)	220, 388, 721
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	4 cut(s)	97, 220, 326, 764
BseNI	ACTGG	3 cut(s)	196, 644, 805
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	837
BsiHKAI	GWGCWC	1 cut(s)	675
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	3 cut(s)	220, 388, 721
BsmAI	GTCTC	2 cut(s)	152, 517
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	837
Bso31I	GGTCTC	1 cut(s)	152
Bsp119I	TTCGAA	2 cut(s)	459, 851
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	247, 772
BspACI	CCGC	4 cut(s)	470, 557, 718, 770
BspANI	GGCC	1 cut(s)	837
BspCNI	CTCAG	4 cut(s)	96, 219, 325, 763
BspLI	GGNNCC	1 cut(s)	774
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	2 cut(s)	767, 780
BspT104I	TTCGAA	2 cut(s)	459, 851
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	3 cut(s)	196, 644, 805
BssECI	CCNNGG	4 cut(s)	88, 264, 265, 574
BssMI	GATC	2 cut(s)	247, 772
BssNI	GRCGYC	1 cut(s)	551
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	1 cut(s)	574
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	2 cut(s)	89, 266
Bst4CI	ACNGT	3 cut(s)	148, 241, 744
BstACI	GRCGYC	1 cut(s)	551
BstBI	TTCGAA	2 cut(s)	459, 851
BstC8I	GCNNGC	2 cut(s)	288, 716
BstDEI	CTNAG	4 cut(s)	83, 206, 312, 750
BstEII	GGTNACC	1 cut(s)	559
BstF5I	GGATG	4 cut(s)	210, 330, 810, 823
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	2 cut(s)	250, 775
BstMAI	GTCTC	2 cut(s)	152, 517
BstMBI	GATC	2 cut(s)	247, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	731
BstNI	CCWGG	2 cut(s)	89, 266
BstNSI	RCATGY	2 cut(s)	594, 869
BstPI	GGTNACC	1 cut(s)	559
BstSCI	CCNGG	2 cut(s)	87, 264
BstSFI	CTRYAG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	772
BstXI	CCANNNNNNTGG	1 cut(s)	639
BstYI	RGATCY	1 cut(s)	772
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	837
BtsCI	GGATG	4 cut(s)	210, 330, 810, 823
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	2 cut(s)	288, 716
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	4 cut(s)	413, 571, 836, 859
Csp6I	GTAC	3 cut(s)	144, 528, 683
CviAII	CATG	2 cut(s)	591, 866
CviJI	RGCY	8 cut(s)	16, 87, 186, 256, 612, 714, 725, 837
CviKI_1	RGCY	8 cut(s)	16, 87, 186, 256, 612, 714, 725, 837
CviQI	GTAC	3 cut(s)	144, 528, 683
DdeI	CTNAG	4 cut(s)	83, 206, 312, 750
DpnI	GATC	2 cut(s)	249, 774
DpnII	GATC	2 cut(s)	247, 772
DraI	TTTAAA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	507
Eco47I	GGWCC	3 cut(s)	413, 571, 859
Eco57I	CTGAAG	1 cut(s)	508
Eco91I	GGTNACC	1 cut(s)	559
EcoO109I	RGGNCCY	3 cut(s)	571, 836, 859
EcoO65I	GGTNACC	1 cut(s)	559
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	87, 264
EcoRV	GATATC	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	2 cut(s)	594, 869
FaiI	YATR	5 cut(s)	221, 320, 465, 592, 867
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	590, 865
FauI	CCCGC	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	4 cut(s)	197, 317, 817, 830
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	5 cut(s)	27, 128, 422, 726, 809
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	837
HhaI	GCGC	1 cut(s)	645
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	2 cut(s)	594, 869
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	2 cut(s)	60, 79
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	6 cut(s)	78, 315, 435, 677, 753, 831
Hpy188III	TCNNGA	4 cut(s)	334, 422, 626, 707
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	3 cut(s)	224, 466, 715
HpyCH4III	ACNGT	3 cut(s)	148, 241, 744
HpyCH4IV	ACGT	2 cut(s)	530, 551
HpyCH4V	TGCA	2 cut(s)	236, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	731
HpyF3I	CTNAG	4 cut(s)	83, 206, 312, 750
HpySE526I	ACGT	2 cut(s)	530, 551
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	2 cut(s)	594, 869
HspAI	GCGC	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	247, 772
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	4 cut(s)	13, 219, 743, 795
MaeI	CTAG	5 cut(s)	27, 128, 422, 726, 809
MaeII	ACGT	2 cut(s)	530, 551
MaeIII	GTNAC	2 cut(s)	241, 559
MalI	GATC	2 cut(s)	249, 774
MboI	GATC	2 cut(s)	247, 772
MboII	GAAGA	4 cut(s)	187, 345, 349, 475
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	4 cut(s)	48, 97, 179, 847
MnlI	CCTC	2 cut(s)	759, 808
MroXI	GAANNNNTTC	2 cut(s)	179, 341
MseI	TTAA	2 cut(s)	53, 871
MspA1I	CMGCKG	1 cut(s)	718
MspR9I	CCNGG	2 cut(s)	89, 266
MvaI	CCWGG	2 cut(s)	89, 266
MwoI	GCNNNNNNNGC	1 cut(s)	731
NdeII	GATC	2 cut(s)	247, 772
NlaIII	CATG	2 cut(s)	594, 869
NlaIV	GGNNCC	1 cut(s)	774
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	2 cut(s)	594, 869
NspV	TTCGAA	2 cut(s)	459, 851
PasI	CCCWGGG	1 cut(s)	265
PdmI	GAANNNNTTC	2 cut(s)	179, 341
PfeI	GAWTC	2 cut(s)	60, 79
PkrI	GCNGC	1 cut(s)	255
PpuMI	RGGWCCY	2 cut(s)	571, 859
Psp5II	RGGWCCY	2 cut(s)	571, 859
Psp6I	CCWGG	2 cut(s)	87, 264
PspEI	GGTNACC	1 cut(s)	559
PspGI	CCWGG	2 cut(s)	87, 264
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	4 cut(s)	413, 571, 836, 859
PspPPI	RGGWCCY	2 cut(s)	571, 859
PstI	CTGCAG	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	772
RsaI	GTAC	3 cut(s)	145, 529, 684
RsaNI	GTAC	3 cut(s)	144, 528, 683
SaqAI	TTAA	2 cut(s)	53, 871
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	2 cut(s)	247, 772
Sau96I	GGNCC	4 cut(s)	413, 571, 836, 859
ScrFI	CCNGG	2 cut(s)	89, 266
SduI	GDGCHC	1 cut(s)	675
SetI	ASST	8 cut(s)	258, 305, 401, 533, 554, 566, 573, 864
SfaNI	GCATC	4 cut(s)	13, 219, 743, 795
SfcI	CTRYAG	1 cut(s)	251
SfuI	TTCGAA	2 cut(s)	459, 851
SinI	GGWCC	3 cut(s)	413, 571, 859
Sse9I	AATT	4 cut(s)	48, 97, 179, 847
SsiI	CCGC	4 cut(s)	470, 557, 718, 770
SspMI	CTAG	5 cut(s)	27, 128, 422, 726, 809
StyD4I	CCNGG	2 cut(s)	87, 264
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	3 cut(s)	148, 241, 744
TaiI	ACGT	2 cut(s)	533, 554
TaqI	TCGA	2 cut(s)	459, 851
TasI	AATT	4 cut(s)	48, 97, 179, 847
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	60, 79
Tru1I	TTAA	2 cut(s)	53, 871
Tru9I	TTAA	2 cut(s)	53, 871
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	475
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	3 cut(s)	413, 571, 859
XapI	RAATTY	3 cut(s)	48, 179, 847
XbaI	TCTAGA	1 cut(s)	421
XceI	RCATGY	2 cut(s)	594, 869
XmnI	GAANNNNTTC	2 cut(s)	179, 341
XspI	CTAG	5 cut(s)	27, 128, 422, 726, 809
ZraI	GACGTC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.