Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Reverse (-)

72823449 .. 72827188

Gene Structure 3740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG520600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGACAAAACTAGCAATCATTCCTTGTACTGTTCTTTTGGAGACCCTTTTCTTTAGGAAGAAATTCAGCCGAAGTATCCAGTTTTCACTCAGCATCCTTCTTATGGGCGTTGGGGTTGCAACAGTGACTGATCTGCAGCTCAATGCCCTGGGTTCTTTTTTGTCCCTGCTGGCAGTTATTACAACCTGTGTTGCTCAGATTATGACCAATACCATCCAGAAGAAGTTCAAAGTTTCTTCAACCCAACTTCTGTATCAGTCTTGCCCTTATCAGGCAATAACCTTGTTTATCATTGGTCCATTTCTAGATGGATTTCTGACTAATCAAAATGTTTTTGCCTTCGAATATACCCCGCAAGTGCTGTTCTTCATTGTTCTATCCTGCCTGATATCTGTCTCTGTAAACTTCAGTACGTTTTTGGTTATTGGAAAGACGTCTGCGGTAACCTATCAGGTCCTTGGACATTTGAAAACATGCCTTGTTTTGACATTTGGCTACACTCTACTTCACGACCCATTTGACTGGCGCAACATTTTAGGGATATTGATTGCCGTGCTCGGAATGGTACTCTATTCTTATTATTGCTCTCGTGAGAGCCAGCGGAAGGCTATTGAAGCATCTCAACAGTTGCCTCAGACAAAGGAGAGTGAAGCGGATCCTTTATTAGCAATGGAAAATGGAACTGGGATGCTAGGGGAGGATGGTGCTGTTCAGAAAGGCCCTGTGTGGAATTCGAACAAGGACCTACATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

251

Amino Acids

27.78

Weight (kDa)

8.18

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	10 - 192	4.8e-14	Triose-phosphate Transporter family
EamA	PF00892	55 - 192	4.1e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	437
AciI	CCGC	4 cut(s)	353, 440, 601, 653
AclWI	GGATC	2 cut(s)	650, 663
AcsI	RAATTY	2 cut(s)	62, 730
AcuI	CTGAAG	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	3 cut(s)	28, 412, 567
AfiI	CCNNNNNNNGG	3 cut(s)	103, 271, 604
AgsI	TTSAA	4 cut(s)	229, 240, 469, 614
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	2 cut(s)	35, 400
AlwI	GGATC	2 cut(s)	650, 663
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	718
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	2 cut(s)	62, 730
Asp700I	GAANNNNTTC	2 cut(s)	62, 224
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	4 cut(s)	296, 454, 719, 742
AsuII	TTCGAA	2 cut(s)	342, 734
AvaII	GGWCC	3 cut(s)	296, 454, 742
BaeI	ACNNNNGTAYC	2 cut(s)	236, 269
BamHI	GGATCC	1 cut(s)	655
BauI	CACGAG	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	221, 302, 695
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	35, 400
BfaI	CTAG	3 cut(s)	11, 305, 692
BfmI	CTRYAG	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	3 cut(s)	296, 454, 742
BmgT120I	GGNCC	4 cut(s)	296, 454, 719, 742
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	1 cut(s)	149
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	3 cut(s)	102, 626, 678
BmuI	ACTGGG	1 cut(s)	693
Bpu14I	TTCGAA	2 cut(s)	342, 734
BsaHI	GRCGYC	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	147, 148, 457
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 271, 604
Bse1I	ACTGG	3 cut(s)	79, 527, 688
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	147, 148, 457
BseGI	GGATG	4 cut(s)	93, 213, 693, 706
BseLI	CCNNNNNNNGG	3 cut(s)	103, 271, 604
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	3 cut(s)	103, 209, 647
BseNI	ACTGG	3 cut(s)	79, 527, 688
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	720
BsiHKAI	GWGCWC	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	3 cut(s)	103, 271, 604
BsmAI	GTCTC	2 cut(s)	35, 400
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	720
Bso31I	GGTCTC	1 cut(s)	35
Bsp119I	TTCGAA	2 cut(s)	342, 734
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	130, 655
BspACI	CCGC	4 cut(s)	353, 440, 601, 653
BspANI	GGCC	1 cut(s)	720
BspCNI	CTCAG	3 cut(s)	102, 208, 646
BspLI	GGNNCC	1 cut(s)	657
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	650, 663
BspT104I	TTCGAA	2 cut(s)	342, 734
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	3 cut(s)	79, 527, 688
BssECI	CCNNGG	3 cut(s)	147, 148, 457
BssMI	GATC	2 cut(s)	130, 655
BssNI	GRCGYC	1 cut(s)	434
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	31, 124, 627
BstACI	GRCGYC	1 cut(s)	434
BstBI	TTCGAA	2 cut(s)	342, 734
BstC8I	GCNNGC	2 cut(s)	171, 599
BstDEI	CTNAG	3 cut(s)	89, 195, 633
BstEII	GGTNACC	1 cut(s)	442
BstF5I	GGATG	4 cut(s)	93, 213, 693, 706
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	2 cut(s)	133, 658
BstMAI	GTCTC	2 cut(s)	35, 400
BstMBI	GATC	2 cut(s)	130, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	477, 752
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	655
BstXI	CCANNNNNNTGG	1 cut(s)	522
BstYI	RGATCY	1 cut(s)	655
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	720
BtsCI	GGATG	4 cut(s)	93, 213, 693, 706
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	171, 599
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	1 cut(s)	528
Cfr13I	GGNCC	4 cut(s)	296, 454, 719, 742
Csp6I	GTAC	3 cut(s)	27, 411, 566
CviAII	CATG	2 cut(s)	474, 749
CviJI	RGCY	6 cut(s)	69, 139, 495, 597, 608, 720
CviKI_1	RGCY	6 cut(s)	69, 139, 495, 597, 608, 720
CviQI	GTAC	3 cut(s)	27, 411, 566
DdeI	CTNAG	3 cut(s)	89, 195, 633
DpnI	GATC	2 cut(s)	132, 657
DpnII	GATC	2 cut(s)	130, 655
Eco130I	CCWWGG	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	390
Eco47I	GGWCC	3 cut(s)	296, 454, 742
Eco57I	CTGAAG	1 cut(s)	391
Eco91I	GGTNACC	1 cut(s)	442
EcoO109I	RGGNCCY	3 cut(s)	454, 719, 742
EcoO65I	GGTNACC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	2 cut(s)	477, 752
FaiI	YATR	5 cut(s)	104, 203, 348, 475, 750
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	473, 748
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	4 cut(s)	80, 200, 700, 713
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	3 cut(s)	11, 305, 692
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	720
HhaI	GCGC	1 cut(s)	528
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	2 cut(s)	477, 752
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	5 cut(s)	198, 318, 560, 636, 714
Hpy188III	TCNNGA	4 cut(s)	217, 305, 509, 590
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	3 cut(s)	107, 349, 598
HpyCH4III	ACNGT	3 cut(s)	31, 124, 627
HpyCH4IV	ACGT	2 cut(s)	413, 434
HpyCH4V	TGCA	2 cut(s)	119, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	3 cut(s)	89, 195, 633
HpySE526I	ACGT	2 cut(s)	413, 434
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	477, 752
HspAI	GCGC	1 cut(s)	526
Kzo9I	GATC	2 cut(s)	130, 655
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	3 cut(s)	102, 626, 678
MaeI	CTAG	3 cut(s)	11, 305, 692
MaeII	ACGT	2 cut(s)	413, 434
MaeIII	GTNAC	2 cut(s)	124, 442
MalI	GATC	2 cut(s)	132, 657
MboI	GATC	2 cut(s)	130, 655
MboII	GAAGA	4 cut(s)	70, 228, 232, 358
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	2 cut(s)	62, 730
MnlI	CCTC	2 cut(s)	642, 691
MroXI	GAANNNNTTC	2 cut(s)	62, 224
MseI	TTAA	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	601
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	614
NdeII	GATC	2 cut(s)	130, 655
NlaIII	CATG	2 cut(s)	477, 752
NlaIV	GGNNCC	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	2 cut(s)	477, 752
NspV	TTCGAA	2 cut(s)	342, 734
PasI	CCCWGGG	1 cut(s)	148
PdmI	GAANNNNTTC	2 cut(s)	62, 224
PkrI	GCNGC	1 cut(s)	138
PpuMI	RGGWCCY	2 cut(s)	454, 742
Psp5II	RGGWCCY	2 cut(s)	454, 742
Psp6I	CCWGG	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	4 cut(s)	296, 454, 719, 742
PspPPI	RGGWCCY	2 cut(s)	454, 742
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	655
RsaI	GTAC	3 cut(s)	28, 412, 567
RsaNI	GTAC	3 cut(s)	27, 411, 566
SaqAI	TTAA	1 cut(s)	754
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	2 cut(s)	130, 655
Sau96I	GGNCC	4 cut(s)	296, 454, 719, 742
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	8 cut(s)	141, 188, 284, 416, 437, 449, 456, 747
SfaNI	GCATC	3 cut(s)	102, 626, 678
SfcI	CTRYAG	1 cut(s)	134
SfuI	TTCGAA	2 cut(s)	342, 734
SinI	GGWCC	3 cut(s)	296, 454, 742
Sse9I	AATT	2 cut(s)	62, 730
SsiI	CCGC	4 cut(s)	353, 440, 601, 653
SspMI	CTAG	3 cut(s)	11, 305, 692
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	3 cut(s)	31, 124, 627
TaiI	ACGT	2 cut(s)	416, 437
TaqI	TCGA	2 cut(s)	342, 734
TasI	AATT	2 cut(s)	62, 730
TatI	WGTACW	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	754
Tru9I	TTAA	1 cut(s)	754
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	3 cut(s)	296, 454, 742
XapI	RAATTY	2 cut(s)	62, 730
XbaI	TCTAGA	1 cut(s)	304
XceI	RCATGY	2 cut(s)	477, 752
XmnI	GAANNNNTTC	2 cut(s)	62, 224
XspI	CTAG	3 cut(s)	11, 305, 692
ZraI	GACGTC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.