Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Forward (+)

26881284 .. 26885568

Gene Structure 4285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1164500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGGAAGGCGCGAGGTTTCAGCTGGGGACAGTGGGAGCGTTGACCCTCTCTGTGGTCTCGTCGGTCTCCATTGTCATTTGCAACAAGGCCCTCATTAGTTCTTTGGGTTTCACTTTTGCCACAACTTTGACAAGCTGGCATCTTTTAGTCACCTTTTGTTCCCTTCACGTGGCTTTAAAGATGAAATTCTTTGAGCACAAACCGCTTGATCAAACGACTGTGACGGGGTTTGGCATTCTGAATGGAATCTCAATTGGACTGTTAAATCTGAGCCTGGGGTTCAATTCAGTTGGCTTTTATCAGATGACTAAGCTGGCAATCATCCCTTGTACTGTACTATTGGAGACCCTTTTCCTAGCGAAGAAATTCAGGAGCATTCAGATTGCCCTCCTTGTTCTGCTCCTTGGTGTTGGGATTGCAACAGTCACTGATGTTCAACTTAATGTTCTTGGAAGTATCTTGTCTCTTCTTGCAGTTATTACAACATGCGTTGCCCAAATTATGACCAATACTATCCAAAAGAAGTTTAAGGTTTCTTCAACACAACTTCTGTATCAATCATGTCCATATCAATCAGGAACTTTATTAATCACTGGCCCGTTTCTGGATTGGTTCTTGACGAATCAAAATGTATTTACTTTCAAGTATACAACTCAAGTGCTGGTTTTCATAATTATATCCTGCCTAATCTCCGTCTCTGTAAACTTTAGCACATTTCTTGTGATCGGAAAGACATCTCCTGTCACCTATCAAGTTCTTGGACATCTAAAGACATGCCTTGTGCTGGCATTTGGTTATATTTTGCTTCATGATCCATTTGACTGGAGGAACATCCTCGGAATATTAGTCGCACTTGCTGGGATGGTTTTATATTCTTACTTTTGCACTCGTGAGGGTCAGAAAAAGGCTGCTGAAGAAGCAACGCAGCCACCACAGGCAGGAGAAGGTGAGTCTGATCCTCTAATGGGGGTGGAAAACGGAAGCGGTGTAGGAACTGATTCTGCTACCCAAATTGCCCCTGTATGGAAGTTGAACAAAGATTTGCATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

352

Amino Acids

38.02

Weight (kDa)

8.57

Isoelectric Point (pI)

25.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 293	3e-16	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	650
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	206, 987
AclWI	GGATC	2 cut(s)	809, 953
AcsI	RAATTY	2 cut(s)	188, 368
AcuI	CTGAAG	1 cut(s)	936
AcvI	CACGTG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	334, 339
AfiI	CCNNNNNNNGG	7 cut(s)	55, 172, 607, 787, 941, 968, 1026
AgsI	TTSAA	5 cut(s)	286, 440, 543, 646, 1036
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	3 cut(s)	25, 138, 316
AluI	AGCT	3 cut(s)	25, 138, 316
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	5 cut(s)	64, 73, 341, 471, 703
AlwI	GGATC	2 cut(s)	809, 953
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	90, 598
ApeKI	GCWGC	2 cut(s)	911, 928
ApoI	RAATTY	2 cut(s)	188, 368
AseI	ATTAAT	1 cut(s)	590
Asp700I	GAANNNNTTC	2 cut(s)	368, 1000
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	91, 599
AsuHPI	GGTGA	3 cut(s)	145, 739, 962
BaeI	ACNNNNGTAYC	2 cut(s)	539, 572
BauI	CACGAG	1 cut(s)	891
BbrPI	CACGTG	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	898, 940
BccI	CCATC	1 cut(s)	859
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	5 cut(s)	64, 73, 341, 471, 703
BfaI	CTAG	1 cut(s)	359
BisI	GCNGC	2 cut(s)	912, 929
BlsI	GCNGC	2 cut(s)	913, 930
Bme1390I	CCNGG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	91, 599
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	847
BpuEI	CTTGAG	1 cut(s)	642
BsaAI	YACGTR	1 cut(s)	172
BsaI	GGTCTC	3 cut(s)	64, 73, 341
BsaJI	CCNNGG	3 cut(s)	277, 406, 838
Bsc4I	CCNNNNNNNGG	7 cut(s)	55, 172, 607, 787, 941, 968, 1026
Bse1I	ACTGG	2 cut(s)	601, 830
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	277, 406, 838
BseGI	GGATG	3 cut(s)	324, 834, 870
BseLI	CCNNNNNNNGG	7 cut(s)	55, 172, 607, 787, 941, 968, 1026
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	601, 830
BseXI	GCAGC	2 cut(s)	898, 940
BseYI	CCCAGC	2 cut(s)	25, 860
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	92, 600
BsiHKAI	GWGCWC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	7 cut(s)	55, 172, 607, 787, 941, 968, 1026
BsmAI	GTCTC	5 cut(s)	64, 73, 341, 471, 703
BsmBI	CGTCTC	1 cut(s)	703
BsmFI	GGGAC	1 cut(s)	43
BsmI	GAATGC	2 cut(s)	237, 378
BsnI	GGCC	2 cut(s)	92, 600
Bso31I	GGTCTC	3 cut(s)	64, 73, 341
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	211, 726, 814, 958
BspACI	CCGC	2 cut(s)	206, 987
BspANI	GGCC	2 cut(s)	92, 600
BspCNI	CTCAG	1 cut(s)	264
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	811
BspPI	GGATC	2 cut(s)	809, 953
BspTNI	GGTCTC	3 cut(s)	64, 73, 341
BsrI	ACTGG	2 cut(s)	601, 830
BssECI	CCNNGG	3 cut(s)	277, 406, 838
BssMI	GATC	4 cut(s)	211, 726, 814, 958
BssNAI	GTATAC	1 cut(s)	651
BssSI	CACGAG	1 cut(s)	891
BssT1I	CCWWGG	1 cut(s)	406
Bst1107I	GTATAC	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	891
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	5 cut(s)	34, 223, 264, 337, 427
Bst6I	CTCTTC	1 cut(s)	474
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	4 cut(s)	140, 318, 789, 1050
BstDEI	CTNAG	2 cut(s)	272, 312
BstF5I	GGATG	3 cut(s)	324, 834, 870
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	4 cut(s)	214, 729, 817, 961
BstMAI	GTCTC	5 cut(s)	64, 73, 341, 471, 703
BstMBI	GATC	4 cut(s)	211, 726, 814, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 920
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	3 cut(s)	492, 780, 1052
BstSCI	CCNGG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	898, 940
BstXI	CCANNNNNNTGG	1 cut(s)	825
BstZ17I	GTATAC	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	92, 600
BtsCI	GGATG	3 cut(s)	324, 834, 870
BtsIMutI	CAGTG	3 cut(s)	39, 429, 594
Cac8I	GCNNGC	4 cut(s)	140, 318, 789, 1050
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	91, 599
Csp6I	GTAC	2 cut(s)	333, 338
CviAII	CATG	5 cut(s)	489, 564, 777, 812, 1049
CviQI	GTAC	2 cut(s)	333, 338
DdeI	CTNAG	2 cut(s)	272, 312
DpnI	GATC	4 cut(s)	213, 728, 816, 960
DpnII	GATC	4 cut(s)	211, 726, 814, 958
DraI	TTTAAA	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	406
Eco31I	GGTCTC	3 cut(s)	64, 73, 341
Eco57I	CTGAAG	1 cut(s)	936
Eco72I	CACGTG	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	703
FaeI	CATG	5 cut(s)	492, 567, 780, 815, 1052
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	5 cut(s)	488, 563, 776, 811, 1048
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	650
Fnu4HI	GCNGC	2 cut(s)	912, 929
FokI	GGATG	3 cut(s)	311, 821, 877
Fsp4HI	GCNGC	2 cut(s)	912, 929
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	912, 929
GsaI	CCCAGC	2 cut(s)	29, 864
GsuI	CTGGAG	1 cut(s)	847
HaeIII	GGCC	2 cut(s)	92, 600
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	492, 567, 780, 815, 1052
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	4 cut(s)	249, 625, 953, 1001
HphI	GGTGA	3 cut(s)	145, 739, 962
Hpy166II	GTNNAC	3 cut(s)	45, 651, 706
Hpy188I	TCNGA	8 cut(s)	243, 273, 306, 384, 731, 842, 903, 958
Hpy188III	TCNNGA	6 cut(s)	373, 579, 608, 619, 812, 893
Hpy8I	GTNNAC	3 cut(s)	45, 651, 706
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	176, 941
HpyCH4III	ACNGT	5 cut(s)	34, 223, 264, 337, 427
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	84, 422, 476, 888, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 920
HpyF3I	CTNAG	2 cut(s)	272, 312
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	492, 567, 780, 815, 1052
HspAI	GCGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	211, 726, 814, 958
LmnI	GCTCC	3 cut(s)	38, 375, 408
Lsp1109I	GCAGC	2 cut(s)	898, 940
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	4 cut(s)	151, 223, 427, 745
MalI	GATC	4 cut(s)	213, 728, 816, 960
MboI	GATC	4 cut(s)	211, 726, 814, 958
MboII	GAAGA	4 cut(s)	376, 461, 531, 929
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	7 cut(s)	188, 255, 286, 368, 501, 675, 1014
MlyI	GAGTC	1 cut(s)	962
MnlI	CCTC	8 cut(s)	9, 59, 104, 401, 822, 848, 889, 972
MroXI	GAANNNNTTC	2 cut(s)	368, 1000
MseI	TTAA	5 cut(s)	179, 266, 444, 531, 590
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	2 cut(s)	237, 378
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	205, 920
NdeII	GATC	4 cut(s)	211, 726, 814, 958
NlaIII	CATG	5 cut(s)	492, 567, 780, 815, 1052
NmuCI	GTSAC	4 cut(s)	151, 223, 427, 745
NspI	RCATGY	3 cut(s)	492, 780, 1052
PaeI	GCATGC	1 cut(s)	1052
PagI	TCATGA	1 cut(s)	811
PctI	GAATGC	2 cut(s)	237, 378
PdmI	GAANNNNTTC	2 cut(s)	368, 1000
PfeI	GAWTC	3 cut(s)	249, 625, 1001
PkrI	GCNGC	2 cut(s)	913, 930
PleI	GAGTC	1 cut(s)	961
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	961
Ppu21I	YACGTR	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	276
PspCI	CACGTG	1 cut(s)	172
PspFI	CCCAGC	2 cut(s)	25, 860
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	91, 599
PstNI	CAGNNNCTG	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	334, 339
RsaNI	GTAC	2 cut(s)	333, 338
SaqAI	TTAA	5 cut(s)	179, 266, 444, 531, 590
SatI	GCNGC	2 cut(s)	912, 929
Sau3AI	GATC	4 cut(s)	211, 726, 814, 958
Sau96I	GGNCC	2 cut(s)	91, 599
SchI	GAGTC	1 cut(s)	962
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	9 cut(s)	20, 27, 140, 158, 174, 318, 537, 752, 952
SfaNI	GCATC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
SphI	GCATGC	1 cut(s)	1052
Sse9I	AATT	7 cut(s)	188, 255, 286, 368, 501, 675, 1014
SsiI	CCGC	2 cut(s)	206, 987
SspI	AATATT	1 cut(s)	846
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	5 cut(s)	34, 223, 264, 337, 427
TaiI	ACGT	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	7 cut(s)	188, 255, 286, 368, 501, 675, 1014
TatI	WGTACW	2 cut(s)	332, 337
TfiI	GAWTC	3 cut(s)	249, 625, 1001
Tru1I	TTAA	5 cut(s)	179, 266, 444, 531, 590
Tru9I	TTAA	5 cut(s)	179, 266, 444, 531, 590
TscAI	CASTG	3 cut(s)	39, 436, 601
TseFI	GTSAC	4 cut(s)	151, 223, 427, 745
TseI	GCWGC	2 cut(s)	911, 928
Tsp45I	GTSAC	4 cut(s)	151, 223, 427, 745
TspDTI	ATGAA	3 cut(s)	200, 661, 800
TspGWI	ACGGA	2 cut(s)	685, 996
TspRI	CASTG	3 cut(s)	39, 436, 601
VspI	ATTAAT	1 cut(s)	590
XapI	RAATTY	2 cut(s)	188, 368
XceI	RCATGY	3 cut(s)	492, 780, 1052
XmiI	GTMKAC	1 cut(s)	650
XmnI	GAANNNNTTC	2 cut(s)	368, 1000
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.