Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Reverse (-)

34062096 .. 34065671

Gene Structure 3576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40350.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGAGAGAGCCAGAAGTTCCAGCTGGGAACCATTGGGGCTCTGAGCTTGTCGGTGGTGTCGTCAGTTTCGATTGTTATTTGCAACAAGGCGCTTATTAGCACGCTTGGTTTTACTTTTGCCACTACTTTGACAAGCTGGCATCTTCTGGTCACATTTTGTTCTCTTCACGTAGCATTATGGATGAGAATGTTTGAGCACAAGCCTTTTGATGCTAGTTCTGTGATGAGTTTTGGAGTTTTAAATGGAACATCTATTGGACTTCTAAATCTCAGTCTTGGTTTCAATTCTGTTGGTTTCTACCAGATGACAAAACTGGCTATCATTCCTTGTACTGTTCTTTTGGAGACCCTTTTCTTTAGGAAGAAATTCAGCCGAAGTATCCAGTTTTCACTCTGCATCCTTCTTATGGGTGTTGGGGTCGCAACAGTGACTGATCTTCAGCTCAATGCCCTGGGTTCTTTTTTGTCCCTGCTGGCAGTTCTTACAACCTGTGTAGCTCAGATTATGACCAATACCATCCAGAAGAAGTTCAAAGTTTCTTCAACCCAACTTCTGTATCAGTCTTGCCCTTATCAGGCGATAACCTTGTTTATCATTGGTCCATTTCTAGATGGATTTCTGACTAGTCGAAATGTTTTTTCCTTCGCATATACCCCACAAGTGCTGTTCTTCATTGTTCTATCCTGCCTCGTATCTGTCTCTGTCAACTTCAGTACGTTTTTGGTTATTGGAAAGACGTCTGCGGTAACCTATCAGGTCCTTGGACATTTGAAAACATGCCTTGTTTTGACATTTGGTTACACTCTACTTCAAGACCCATTTGACTGGCGCAATATTTTAGGAATATTGATTGCTGTACTTGGAATGGTACTATATTCTTATTGTTGCACTCGTGAGAGCCAGCGGAAGGCTAGTGAAGCATCTCAACAGTTGCCTCAGACGAAGGAAAGTGAAGTGGATCCTTTATTAGCAATGGAAAGTGGAACTGGAATGCTAGGGGAGGATGGTGCCGTTCAGAAAGGTACTTTGTGGAATTCAAACAAGGACCTGCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

354

Amino Acids

38.67

Weight (kDa)

8.64

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 294	1.1e-16	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	1010
AciI	CCGC	2 cut(s)	746, 907
AclWI	GGATC	2 cut(s)	956, 969
AcsI	RAATTY	2 cut(s)	368, 1036
AcuI	CTGAAG	2 cut(s)	425, 697
AcyI	GRCGYC	1 cut(s)	740
AfaI	GTAC	5 cut(s)	334, 718, 861, 873, 1027
AfiI	CCNNNNNNNGG	3 cut(s)	409, 577, 910
AgsI	TTSAA	6 cut(s)	286, 535, 546, 775, 815, 1041
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	5 cut(s)	25, 48, 138, 445, 500
AluI	AGCT	5 cut(s)	25, 48, 138, 445, 500
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	2 cut(s)	341, 706
AlwI	GGATC	2 cut(s)	956, 969
AlwNI	CAGNNNCTG	1 cut(s)	434
ApoI	RAATTY	2 cut(s)	368, 1036
Asp700I	GAANNNNTTC	2 cut(s)	368, 530
AspLEI	GCGC	2 cut(s)	94, 834
AspS9I	GGNCC	3 cut(s)	602, 760, 1048
AvaII	GGWCC	3 cut(s)	602, 760, 1048
BaeI	ACNNNNGTAYC	2 cut(s)	542, 575
BamHI	GGATCC	1 cut(s)	961
BanI	GGYRCC	1 cut(s)	1010
BanII	GRGCYC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	3 cut(s)	527, 608, 1001
BceAI	ACGGC	1 cut(s)	998
BciT130I	CCWGG	1 cut(s)	455
BciVI	GTATCC	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	341, 706
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	5 cut(s)	216, 611, 627, 915, 998
BfoI	RGCGCY	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	3 cut(s)	602, 760, 1048
BmgT120I	GGNCC	3 cut(s)	602, 760, 1048
BmiI	GGNNCC	3 cut(s)	31, 963, 1012
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	4 cut(s)	151, 202, 408, 932
BsaAI	YACGTR	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	740
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	453, 454, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	409, 577, 910
Bse1I	ACTGG	4 cut(s)	321, 385, 833, 994
Bse3DI	GCAATG	1 cut(s)	981
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	3 cut(s)	453, 454, 763
BseGI	GGATG	4 cut(s)	189, 399, 519, 1012
BseLI	CCNNNNNNNGG	3 cut(s)	409, 577, 910
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	4 cut(s)	35, 286, 515, 953
BseNI	ACTGG	4 cut(s)	321, 385, 833, 994
BseYI	CCCAGC	1 cut(s)	25
BshNI	GGYRCC	1 cut(s)	1010
BsiHKAI	GWGCWC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	3 cut(s)	409, 577, 910
BsmAI	GTCTC	2 cut(s)	341, 706
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	999
Bso31I	GGTCTC	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	43, 201
Bsp143I	GATC	2 cut(s)	436, 961
BspACI	CCGC	2 cut(s)	746, 907
BspCNI	CTCAG	4 cut(s)	36, 285, 514, 952
BspLI	GGNNCC	3 cut(s)	31, 963, 1012
BspPI	GGATC	2 cut(s)	956, 969
BspT107I	GGYRCC	1 cut(s)	1010
BspTNI	GGTCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	981
BsrI	ACTGG	4 cut(s)	321, 385, 833, 994
BssECI	CCNNGG	3 cut(s)	453, 454, 763
BssMI	GATC	2 cut(s)	436, 961
BssNI	GRCGYC	1 cut(s)	740
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	1 cut(s)	763
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	3 cut(s)	337, 430, 933
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	740
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	5 cut(s)	104, 140, 477, 905, 1056
BstDEI	CTNAG	4 cut(s)	44, 272, 501, 939
BstEII	GGTNACC	1 cut(s)	748
BstF5I	GGATG	4 cut(s)	189, 399, 519, 1012
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	94, 834
BstKTI	GATC	2 cut(s)	439, 964
BstMAI	GTCTC	2 cut(s)	341, 706
BstMBI	GATC	2 cut(s)	436, 961
BstMWI	GCNNNNNNNGC	1 cut(s)	920
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	2 cut(s)	783, 1058
BstPI	GGTNACC	1 cut(s)	748
BstSCI	CCNGG	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	961
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	961
BsuI	GTATCC	1 cut(s)	392
BtsCI	GGATG	4 cut(s)	189, 399, 519, 1012
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	5 cut(s)	104, 140, 477, 905, 1056
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	2 cut(s)	94, 834
Cfr13I	GGNCC	3 cut(s)	602, 760, 1048
Csp6I	GTAC	5 cut(s)	333, 717, 860, 872, 1026
CviAII	CATG	2 cut(s)	780, 1055
CviQI	GTAC	5 cut(s)	333, 717, 860, 872, 1026
DdeI	CTNAG	4 cut(s)	44, 272, 501, 939
DpnI	GATC	2 cut(s)	438, 963
DpnII	GATC	2 cut(s)	436, 961
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	763
Eco24I	GRGCYC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	3 cut(s)	602, 760, 1048
Eco57I	CTGAAG	2 cut(s)	425, 697
Eco91I	GGTNACC	1 cut(s)	748
EcoO109I	RGGNCCY	2 cut(s)	760, 1048
EcoO65I	GGTNACC	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	1036
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	763
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	763
FaeI	CATG	2 cut(s)	783, 1058
FaiI	YATR	8 cut(s)	181, 410, 509, 652, 654, 781, 877, 1056
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	2 cut(s)	779, 1054
FokI	GGATG	4 cut(s)	196, 386, 506, 1019
FriOI	GRGCYC	1 cut(s)	43
FspBI	CTAG	5 cut(s)	216, 611, 627, 915, 998
GlaI	GCGC	2 cut(s)	93, 833
GsaI	CCCAGC	1 cut(s)	29
HaeII	RGCGCY	1 cut(s)	95
HhaI	GCGC	2 cut(s)	94, 834
Hin1I	GRCGYC	1 cut(s)	740
Hin1II	CATG	2 cut(s)	783, 1058
Hin6I	GCGC	2 cut(s)	92, 832
HinP1I	GCGC	2 cut(s)	92, 832
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	5 cut(s)	45, 504, 624, 942, 1020
Hpy188III	TCNNGA	4 cut(s)	523, 611, 815, 896
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	4 cut(s)	413, 655, 904, 940
HpyCH4III	ACNGT	3 cut(s)	337, 430, 933
HpyCH4IV	ACGT	3 cut(s)	171, 719, 740
HpyCH4V	TGCA	4 cut(s)	84, 399, 891, 1054
HpyF10VI	GCNNNNNNNGC	1 cut(s)	920
HpyF3I	CTNAG	4 cut(s)	44, 272, 501, 939
HpySE526I	ACGT	3 cut(s)	171, 719, 740
Hsp92I	GRCGYC	1 cut(s)	740
Hsp92II	CATG	2 cut(s)	783, 1058
HspAI	GCGC	2 cut(s)	92, 832
Kzo9I	GATC	2 cut(s)	436, 961
LweI	GCATC	4 cut(s)	151, 202, 408, 932
MaeI	CTAG	5 cut(s)	216, 611, 627, 915, 998
MaeII	ACGT	3 cut(s)	171, 719, 740
MaeIII	GTNAC	4 cut(s)	151, 430, 748, 800
MalI	GATC	2 cut(s)	438, 963
MboI	GATC	2 cut(s)	436, 961
MboII	GAAGA	7 cut(s)	137, 158, 376, 431, 534, 538, 664
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	2 cut(s)	43, 201
MluCI	AATT	3 cut(s)	286, 368, 1036
MnlI	CCTC	3 cut(s)	701, 948, 997
MroXI	GAANNNNTTC	2 cut(s)	368, 530
MseI	TTAA	2 cut(s)	242, 1060
MspA1I	CMGCKG	2 cut(s)	25, 907
MspR9I	CCNGG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	999
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	920
NdeII	GATC	2 cut(s)	436, 961
NlaIII	CATG	2 cut(s)	783, 1058
NlaIV	GGNNCC	3 cut(s)	31, 963, 1012
NmuCI	GTSAC	2 cut(s)	151, 430
NspI	RCATGY	2 cut(s)	783, 1058
PaeI	GCATGC	1 cut(s)	1058
PasI	CCCWGGG	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 68
PctI	GAATGC	1 cut(s)	999
PdmI	GAANNNNTTC	2 cut(s)	368, 530
Ppu21I	YACGTR	1 cut(s)	172
PpuMI	RGGWCCY	2 cut(s)	760, 1048
Psp5II	RGGWCCY	2 cut(s)	760, 1048
Psp6I	CCWGG	1 cut(s)	453
PspEI	GGTNACC	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	3 cut(s)	31, 963, 1012
PspPI	GGNCC	3 cut(s)	602, 760, 1048
PspPPI	RGGWCCY	2 cut(s)	760, 1048
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	961
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	5 cut(s)	334, 718, 861, 873, 1027
RsaNI	GTAC	5 cut(s)	333, 717, 860, 872, 1026
SaqAI	TTAA	2 cut(s)	242, 1060
Sau3AI	GATC	2 cut(s)	436, 961
Sau96I	GGNCC	3 cut(s)	602, 760, 1048
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	2 cut(s)	43, 201
SfaNI	GCATC	4 cut(s)	151, 202, 408, 932
SinI	GGWCC	3 cut(s)	602, 760, 1048
SpeI	ACTAGT	1 cut(s)	626
SphI	GCATGC	1 cut(s)	1058
Sse9I	AATT	3 cut(s)	286, 368, 1036
SsiI	CCGC	2 cut(s)	746, 907
SspI	AATATT	2 cut(s)	838, 849
SspMI	CTAG	5 cut(s)	216, 611, 627, 915, 998
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	763
TaaI	ACNGT	3 cut(s)	337, 430, 933
TaiI	ACGT	3 cut(s)	174, 722, 743
TaqI	TCGA	2 cut(s)	71, 631
TasI	AATT	3 cut(s)	286, 368, 1036
TatI	WGTACW	2 cut(s)	332, 859
Tru1I	TTAA	2 cut(s)	242, 1060
Tru9I	TTAA	2 cut(s)	242, 1060
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	2 cut(s)	151, 430
Tsp45I	GTSAC	2 cut(s)	151, 430
TspDTI	ATGAA	1 cut(s)	664
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	3 cut(s)	602, 760, 1048
XapI	RAATTY	2 cut(s)	368, 1036
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	2 cut(s)	783, 1058
XmnI	GAANNNNTTC	2 cut(s)	368, 530
XspI	CTAG	5 cut(s)	216, 611, 627, 915, 998
ZraI	GACGTC	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.