Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Forward (+)

19627609 .. 19630850

Gene Structure 3242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGCGAGGGTGAAAGGTTTCAGCTTGGGACTGTTGGAGCGTTGACTCTCTCTGTGGTGTCTTCAGTCTCCATTGTTATTTGTAACAAGGCCCTCATTAGCTCCCTGGGTTTCACTTTTGCTACAACTTTGACAAGTTGGCATCTTTTGGTCACATTTTGTTCCCTTCATGTGGCTTTGAGTATGAGATTCTTTGAGCACAAGCCTCTGGATCAAAAGACTGTTACGGGGTTTGGCATTCTGAATGGGATCTCCATAGGACTTTTAAATCTGAGCCTGGGGTTCAATTCTGTTGGCTTTTATCAGATGACTAAACTGGCAATCATCCCTTGTACTGTACTACTGGAGACCCTTTTTCTTGGGAAGAAGTTCAGTAGGAGCATTCAGTTCGCCCTCCTTATCCTCCTTTTCGGTGTTGGGATTGCAACGGTTACTGATGTTCAACTGAATGCTCTAGGAAGTATCTTGTCTCTACTTGCGGTCCTTACAACATGTGTTGCTCAAATTATGACCAATACCATCCAGAAGAAGTATAAGGTTTCTTCAACACAACTTCTATATCAATCATGCCCCTATCAGTCAGGGACATTATTGATCACTGGCCCATTTCTGGATTGGTTTTTGACAAATCAAAATGTATTCTCTTTCAAGTATACAACTCAAGTGCTGGTTTTCATTGTTCTATCCTGCCTGATCTCTGTGTCTGTTAATTTTAGCACATTTCTTGTGATTGGAAAGACATCTCCTGTCACCTATCAAGTTCTTGGACATCTGAAGACATGTCTTGTGCTTACATTTGGTTATACTTTGCTTCATGATCCATTTGACTGGAGGAACATCCTAGGAATTTTGGTTGCACTAATGGGGATGGTTTTGTATTCTTATTTTTGCACTCGGGAGGGTCAGAAAAAGGTTGCTGAAGAAGCAACACAGGTCCTAAAGGCAGGGGAAGGTGAATCGGATCCTCTAATGAGCGTGGAAAATGGAAGCGGGTTGAAGCTTGCCGTTACTCAGATGTCCCCTCCTTCATGGAAGTCGAACAAAGATCTACATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

353

Amino Acids

38.45

Weight (kDa)

8.84

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 294	3.3e-18	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	653
AciI	CCGC	2 cut(s)	479, 990
AclWI	GGATC	5 cut(s)	219, 257, 812, 956, 969
AcsI	RAATTY	1 cut(s)	846
AcuI	CTGAAG	3 cut(s)	48, 794, 939
AfaI	GTAC	2 cut(s)	334, 339
AfiI	CCNNNNNNNGG	2 cut(s)	172, 610
AflIII	ACRYGT	2 cut(s)	491, 779
AgsI	TTSAA	5 cut(s)	286, 443, 546, 649, 997
AjnI	CCWGG	2 cut(s)	105, 276
AluBI	AGCT	3 cut(s)	25, 102, 1000
AluI	AGCT	3 cut(s)	25, 102, 1000
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	3 cut(s)	73, 341, 474
AlwI	GGATC	5 cut(s)	219, 257, 812, 956, 969
Ama87I	CYCGRG	1 cut(s)	894
AoxI	GGCC	2 cut(s)	90, 601
ApoI	RAATTY	1 cut(s)	846
Asp700I	GAANNNNTTC	2 cut(s)	18, 368
AspA2I	CCTAGG	1 cut(s)	841
AspS9I	GGNCC	4 cut(s)	91, 481, 602, 934
AsuHPI	GGTGA	3 cut(s)	23, 742, 965
AvaI	CYCGRG	1 cut(s)	894
AvaII	GGWCC	2 cut(s)	481, 934
AvrII	CCTAGG	1 cut(s)	841
BamHI	GGATCC	1 cut(s)	961
BbsI	GAAGAC	2 cut(s)	54, 782
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	2 cut(s)	527, 862
BceAI	ACGGC	1 cut(s)	989
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciT130I	CCWGG	2 cut(s)	107, 278
BclI	TGATCA	1 cut(s)	594
BcoDI	GTCTC	3 cut(s)	73, 341, 474
BfaI	CTAG	2 cut(s)	455, 842
BglII	AGATCT	1 cut(s)	1045
BlnI	CCTAGG	1 cut(s)	841
Bme1390I	CCNGG	2 cut(s)	107, 278
Bme18I	GGWCC	2 cut(s)	481, 934
BmeT110I	CYCGRG	1 cut(s)	894
BmgT120I	GGNCC	4 cut(s)	91, 481, 602, 934
BmiI	GGNNCC	1 cut(s)	963
BmrFI	CCNGG	2 cut(s)	107, 278
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	54, 782
BpmI	CTGGAG	2 cut(s)	365, 850
BpuEI	CTTGAG	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	4 cut(s)	105, 106, 277, 841
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 610
Bse1I	ACTGG	4 cut(s)	321, 348, 604, 833
BseBI	CCWGG	2 cut(s)	107, 278
BseDI	CCNNGG	4 cut(s)	105, 106, 277, 841
BseGI	GGATG	4 cut(s)	324, 519, 837, 873
BseLI	CCNNNNNNNGG	2 cut(s)	172, 610
BseMII	CTCAG	2 cut(s)	263, 1025
BseNI	ACTGG	4 cut(s)	321, 348, 604, 833
BshFI	GGCC	2 cut(s)	92, 603
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	894
BslFI	GGGAC	3 cut(s)	43, 598, 1003
BslI	CCNNNNNNNGG	2 cut(s)	172, 610
BsmAI	GTCTC	3 cut(s)	73, 341, 474
BsmFI	GGGAC	3 cut(s)	43, 598, 1003
BsmI	GAATGC	3 cut(s)	237, 381, 454
BsnI	GGCC	2 cut(s)	92, 603
Bso31I	GGTCTC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	894
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	7 cut(s)	211, 249, 594, 693, 817, 961, 1045
BspACI	CCGC	2 cut(s)	479, 990
BspANI	GGCC	2 cut(s)	92, 603
BspCNI	CTCAG	2 cut(s)	264, 1024
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	963
BspPI	GGATC	5 cut(s)	219, 257, 812, 956, 969
BspTNI	GGTCTC	1 cut(s)	341
BsrI	ACTGG	4 cut(s)	321, 348, 604, 833
BssECI	CCNNGG	4 cut(s)	105, 106, 277, 841
BssMI	GATC	7 cut(s)	211, 249, 594, 693, 817, 961, 1045
BssNAI	GTATAC	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	841
Bst1107I	GTATAC	1 cut(s)	654
Bst2UI	CCWGG	2 cut(s)	107, 278
Bst4CI	ACNGT	4 cut(s)	34, 223, 337, 430
BstC8I	GCNNGC	1 cut(s)	1002
BstDEI	CTNAG	2 cut(s)	272, 1011
BstF5I	GGATG	4 cut(s)	324, 519, 837, 873
BstKTI	GATC	7 cut(s)	214, 252, 597, 696, 820, 964, 1048
BstMAI	GTCTC	3 cut(s)	73, 341, 474
BstMBI	GATC	7 cut(s)	211, 249, 594, 693, 817, 961, 1045
BstMWI	GCNNNNNNNGC	1 cut(s)	923
BstNI	CCWGG	2 cut(s)	107, 278
BstNSI	RCATGY	3 cut(s)	495, 783, 1055
BstSCI	CCNGG	2 cut(s)	105, 276
BstV2I	GAAGAC	2 cut(s)	54, 782
BstX2I	RGATCY	3 cut(s)	249, 961, 1045
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	3 cut(s)	249, 961, 1045
BstZ17I	GTATAC	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	92, 603
BtsCI	GGATG	4 cut(s)	324, 519, 837, 873
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	1002
CciI	TCATGA	1 cut(s)	814
Cfr13I	GGNCC	4 cut(s)	91, 481, 602, 934
Csp6I	GTAC	2 cut(s)	333, 338
CviAII	CATG	7 cut(s)	170, 492, 567, 780, 815, 1029, 1052
CviJI	RGCY	9 cut(s)	25, 92, 102, 176, 205, 276, 297, 603, 1000
CviKI_1	RGCY	9 cut(s)	25, 92, 102, 176, 205, 276, 297, 603, 1000
CviQI	GTAC	2 cut(s)	333, 338
DdeI	CTNAG	2 cut(s)	272, 1011
DpnI	GATC	7 cut(s)	213, 251, 596, 695, 819, 963, 1047
DpnII	GATC	7 cut(s)	211, 249, 594, 693, 817, 961, 1045
DraI	TTTAAA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	841
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	2 cut(s)	481, 934
Eco57I	CTGAAG	3 cut(s)	48, 794, 939
Eco88I	CYCGRG	1 cut(s)	894
EcoO109I	RGGNCCY	2 cut(s)	91, 934
EcoRII	CCWGG	2 cut(s)	105, 276
EcoT14I	CCWWGG	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	841
FaeI	CATG	7 cut(s)	173, 495, 570, 783, 818, 1032, 1055
FaqI	GGGAC	3 cut(s)	43, 598, 1003
FatI	CATG	7 cut(s)	169, 491, 566, 779, 814, 1028, 1051
FauI	CCCGC	1 cut(s)	983
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	653
FokI	GGATG	4 cut(s)	311, 506, 824, 880
FspBI	CTAG	2 cut(s)	455, 842
GsuI	CTGGAG	2 cut(s)	365, 850
HaeIII	GGCC	2 cut(s)	92, 603
Hin1II	CATG	7 cut(s)	173, 495, 570, 783, 818, 1032, 1055
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	998
HinfI	GANTC	3 cut(s)	46, 189, 956
HphI	GGTGA	3 cut(s)	23, 742, 965
Hpy166II	GTNNAC	2 cut(s)	45, 654
Hpy188I	TCNGA	7 cut(s)	243, 273, 306, 774, 906, 961, 1014
Hpy188III	TCNNGA	5 cut(s)	209, 523, 611, 815, 896
Hpy8I	GTNNAC	2 cut(s)	45, 654
HpyAV	CCTTC	3 cut(s)	176, 944, 1035
HpyCH4III	ACNGT	4 cut(s)	34, 223, 337, 430
HpyCH4V	TGCA	3 cut(s)	425, 857, 891
HpyF10VI	GCNNNNNNNGC	1 cut(s)	923
HpyF3I	CTNAG	2 cut(s)	272, 1011
Hsp92II	CATG	7 cut(s)	173, 495, 570, 783, 818, 1032, 1055
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	7 cut(s)	211, 249, 594, 693, 817, 961, 1045
LmnI	GCTCC	3 cut(s)	38, 107, 378
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	455, 842
MaeIII	GTNAC	6 cut(s)	83, 151, 223, 430, 748, 1006
MalI	GATC	7 cut(s)	213, 251, 596, 695, 819, 963, 1047
MboI	GATC	7 cut(s)	211, 249, 594, 693, 817, 961, 1045
MboII	GAAGA	6 cut(s)	54, 376, 534, 538, 787, 932
MflI	RGATCY	3 cut(s)	249, 961, 1045
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	4 cut(s)	286, 504, 709, 846
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	8 cut(s)	104, 216, 404, 413, 825, 892, 975, 1032
MroXI	GAANNNNTTC	2 cut(s)	18, 368
MseI	TTAA	2 cut(s)	266, 708
MspR9I	CCNGG	2 cut(s)	107, 278
Mva1269I	GAATGC	3 cut(s)	237, 381, 454
MvaI	CCWGG	2 cut(s)	107, 278
MwoI	GCNNNNNNNGC	1 cut(s)	923
NdeII	GATC	7 cut(s)	211, 249, 594, 693, 817, 961, 1045
NlaIII	CATG	7 cut(s)	173, 495, 570, 783, 818, 1032, 1055
NlaIV	GGNNCC	1 cut(s)	963
NmuCI	GTSAC	2 cut(s)	151, 748
NspI	RCATGY	3 cut(s)	495, 783, 1055
PagI	TCATGA	1 cut(s)	814
PasI	CCCWGGG	1 cut(s)	106
PciI	ACATGT	2 cut(s)	491, 779
PctI	GAATGC	3 cut(s)	237, 381, 454
PdmI	GAANNNNTTC	2 cut(s)	18, 368
PfeI	GAWTC	2 cut(s)	189, 956
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	934
PscI	ACATGT	2 cut(s)	491, 779
Psp5II	RGGWCCY	1 cut(s)	934
Psp6I	CCWGG	2 cut(s)	105, 276
PspGI	CCWGG	2 cut(s)	105, 276
PspN4I	GGNNCC	1 cut(s)	963
PspPI	GGNCC	4 cut(s)	91, 481, 602, 934
PspPPI	RGGWCCY	1 cut(s)	934
PsuI	RGATCY	3 cut(s)	249, 961, 1045
RsaI	GTAC	2 cut(s)	334, 339
RsaNI	GTAC	2 cut(s)	333, 338
SaqAI	TTAA	2 cut(s)	266, 708
Sau3AI	GATC	7 cut(s)	211, 249, 594, 693, 817, 961, 1045
Sau96I	GGNCC	4 cut(s)	91, 481, 602, 934
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	107, 278
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	9 cut(s)	20, 27, 104, 540, 755, 915, 936, 955, 1002
SfaNI	GCATC	1 cut(s)	151
SinI	GGWCC	2 cut(s)	481, 934
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
Sse9I	AATT	4 cut(s)	286, 504, 709, 846
SsiI	CCGC	2 cut(s)	479, 990
SspMI	CTAG	2 cut(s)	455, 842
StyD4I	CCNGG	2 cut(s)	105, 276
StyI	CCWWGG	1 cut(s)	841
TaaI	ACNGT	4 cut(s)	34, 223, 337, 430
TaqI	TCGA	1 cut(s)	1037
TasI	AATT	4 cut(s)	286, 504, 709, 846
TatI	WGTACW	2 cut(s)	332, 337
TfiI	GAWTC	2 cut(s)	189, 956
Tru1I	TTAA	2 cut(s)	266, 708
Tru9I	TTAA	2 cut(s)	266, 708
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	2 cut(s)	151, 748
Tsp45I	GTSAC	2 cut(s)	151, 748
TspDTI	ATGAA	4 cut(s)	158, 664, 803, 1017
TspRI	CASTG	1 cut(s)	604
VpaK11BI	GGWCC	2 cut(s)	481, 934
XapI	RAATTY	1 cut(s)	846
XceI	RCATGY	3 cut(s)	495, 783, 1055
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XmaJI	CCTAGG	1 cut(s)	841
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	2 cut(s)	18, 368
XspI	CTAG	2 cut(s)	455, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.