Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Reverse (-)

58376979 .. 58380163

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0419600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGGAGTTCGTCTACAGCATAGCTGAGACAGTCTTGGGTAGGCTAGCTTCACATGCTTCCCAAGAAGTCTCGTTGGCATGGGGTGCCCAACTTGAGCTCACCAAGCTTAACAAGACCTTATCTGCCATCAAACTAGTGCTCGAGGATGCAGAGAAGAAGCAAGTGAGGAATCCCCTAATCACTCGTTGGTTAGGAAATCTCAAAGATGTTTGCCATGACGTTGATGATGTCTTGGACGAACTGGAGTTCCAAAAGTTGTGGTTGAAAGTGGAGGTCGATAACTGTGGGAAGATCAAAGGAAAGGTACGCCAATCTTTTTCTCGTTGGAATCCAGTAGTGTTTAACTTCAAAATGGGACATAAAGTGAAAGAGATTAGAGAACGACTGGTTGAAATTGATAATGAAAAGAGAGAGTTTGCTCTCCTTGAGGTTGCTAAGATAGTTGAAGATCATCATGCGCCCCAAGGGATGCACGATAATAAAAGAGAGACTGACTCTTTAGTGGAGGCCTCAGATGTTATTGGGAGAGATAATGATAAAAAACAGATTATCAGCCATCTCTTAAATAACACTGATATCTCTAGTGAGGAGAATATTTCTATTATTTCTATCCTTGGTTTAGGAGGGTTGGGAAAGACAACTCTTGCTAAATTAGTGTATAATGATAGCATGGTAGAGGAGAATTTTGAGATGAAAATGTGGATATGTGTCTCAGAAAACTTTGAAATCCGAACATTAATTCGTGGCATTATCAATGCTGCAATTAAACAAAAATGTGAGGATGAAAGTTTGGACCTTATGAAAAAAAGATTGCAAGATACTTTGCGAGGTAGAAAGTTTTTGTTAGTGTTGGATGATGTTTGGGATACGGAGTTAATTGGAGTAACGATAGAAAAATGGATTGATTTAAAAAATCTGTTAAATGTGGGAGCTAATGGAAGTAGAATCATCATAACAACACGAAATAGTTCAGTTGCTTTACTTGTGAATCCCGCATACATGCACCCCTTAGAAGGTCTTTCCCACAAAGAATGCATGTCCTTGTTCATTAAAAGGGTATTTAAGAAAGGAGAGGAGCAACGCTATCAACATTTGATAGAAATTGGAGAGGATATTGTGAAGAAGTGTGGAGGAGTTCCTTTAGCAGTAGCTACTGTAGGGAGCATGCTCTATTTGAAAACAGAGCAACACCATTGGTTGCGTGTTAGAGATGATGACATGTGGAGCATAAGGAATGACAATATTCTACCTGCAATCAAATTGAGCTATGACGCATTGCCACAACACTTGAAACCGTGTTTTGCATTTTGTTCACTTTTTCCAAAGGATTATTTATTCCAGGGTCACCTTTTGGTTCCACTGTGGACAGCACAAGGCTACCTCAAGACATCTGAGAAAAATGAAGATTTTGAACATATGGGTATAGACTATATAAGGCAGTTTTGCTCTAGATCTTTGTTTCAAGTGGAGATGGATCTCAAAACAACCATAAGTTTTAAAATACATGATCTAGTTCATGATTTAGCAATTTCAGTGGCACAAGTAGAGTACTCCACAATCAATTTCCGTCCCTCTAGTGCTTTGGAAATGGTTCGACATGTGTCAATATCAGAAAAAGAATTACTTGGAGAAGAGGCACAAGTTCCCGCTTTCATGCTCAAGTCAAAGAAATTACGAACCATTCTAATTCCTGAAGATGGCCAGATGAATCAACGTTTTGTGAAGACATGCATCTCAAGATTCAAATATATGCGGGTGCTAGATCTCAGTGGTTCGCCTCTTGAGGAGCTACCCAGTTCCATTGGTAGTTTGTTTCATTTGAGATTTCTCAACTTGTCTTCTAATAGTAAGATAAAGAGGCTTCCCAATTCCATCAGTAAGCTGCTGAATTTGGAGACCTTGTCCTTTTGGGGTTGTGAAGCACTTGAGGAGATACCCAAAGACATAGGAAACCTGATCAACCTCCGAAGCTTGGTGATAACTACACAACAAATGTCTTTGCCGAAAGGAATTAGACGCCTCACCTTACTTCAATTTTTATATTTTCATGGATGTGTCAATCTTAAATCTTTGGGCGAAGAGATCGAATTCCTCAACAACCTTCGCAATTTGTGGATTAGCAGTTGTAATAATTTGGAATCCTTGCCACCAAATATGAAACGCATGATTGCTTTAGATACTTTGACTGTCGATGATTGCGAGGAGCTTCAGTTGATGATGAGATCAGGGGAAGGTCCTCAAGGTCTTCGATCATTGATTATCATGAAATCAAGTTTGGAGGCTTTGCCCCCTTGGCTTGAAGATTCTGCAGACACTCTACAGAGCATAGCAGTTTCTGAATGTCATAATCTCACGGCACTTCCGGAGTTGATAAACTTCAAATTCCTCGAGCAACTACGCATTGAAGAATGCTCCAAATTGTCGGCTTTGCCGCAAGGGTTGCAGAGCCTTACTGAGTTGAGAGAATTGAACATTAAAGGGTGTACTGAATTGAGCAAAATCTGCAAGAGGCAATTAAAAGGTGAGAATTGGTTGTCAAAGATGGCACGTCAAGCAAAGATTACACTCGACTCTGATGTGGATACTGATGATGAAGAAGACGAAGATGAAGTTACACCAATGATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

876

Amino Acids

100.06

Weight (kDa)

5.74

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	9 - 93	2.8e-19	Rx N-terminal domain
NB-ARC	PF00931	178 - 356	1.6e-33	NB-ARC domain
WHD_DRP	PF23559	439 - 509	7.5e-19	Disease resistance protein Winged helix domain
LRR_14	PF23598	577 - 773	1.5e-26	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	746 - 804	1.1e-06	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1258
AccB1I	GGYRCC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	2362
AciI	CCGC	4 cut(s)	993, 1647, 1753, 2432
AclI	AACGTT	1 cut(s)	1714
AclWI	GGATC	1 cut(s)	1482
AcoI	YGGCCR	1 cut(s)	1699
AcsI	RAATTY	4 cut(s)	682, 1888, 2087, 2381
AcuI	CTGAAG	2 cut(s)	1713, 2192
AcyI	GRCGYC	1 cut(s)	2017
AfaI	GTAC	3 cut(s)	306, 1550, 2485
AfiI	CCNNNNNNNGG	3 cut(s)	1013, 1697, 1972
AflIII	ACRYGT	2 cut(s)	1218, 1597
AhlI	ACTAGT	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	2549
AjnI	CCWGG	1 cut(s)	1338
AjuI	GAANNNNNNNTTGG	2 cut(s)	2258, 2290
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
Alw21I	GWGCWC	2 cut(s)	99, 141
Alw26I	GTCTC	5 cut(s)	20, 73, 482, 715, 1889
AlwI	GGATC	1 cut(s)	1482
AlwNI	CAGNNNCTG	1 cut(s)	2336
Ama87I	CYCGRG	2 cut(s)	140, 2387
Aor13HI	TCCGGA	1 cut(s)	2362
AoxI	GGCC	2 cut(s)	507, 1699
ApeKI	GCWGC	2 cut(s)	758, 1882
ApoI	RAATTY	4 cut(s)	682, 1888, 2087, 2381
AseI	ATTAAT	1 cut(s)	737
Asp700I	GAANNNNTTC	2 cut(s)	967, 1590
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	2 cut(s)	793, 2234
AsuHPI	GGTGA	5 cut(s)	91, 1337, 1987, 2014, 2534
AsuNHI	GCTAGC	1 cut(s)	43
AvaI	CYCGRG	2 cut(s)	140, 2387
AvaII	GGWCC	2 cut(s)	793, 2234
BaeGI	GKGCMC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	1701
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	31, 63
BbsI	GAAGAC	4 cut(s)	1730, 1830, 2237, 2604
Bbv12I	GWGCWC	2 cut(s)	99, 141
BbvI	GCAGC	2 cut(s)	745, 1869
BccI	CCATC	7 cut(s)	134, 564, 1465, 1691, 1880, 2536, 2617
BceAI	ACGGC	1 cut(s)	2370
BciT130I	CCWGG	1 cut(s)	1340
BciVI	GTATCC	2 cut(s)	859, 2575
BclI	TGATCA	1 cut(s)	1956
BcoDI	GTCTC	5 cut(s)	20, 73, 482, 715, 1889
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	7 cut(s)	44, 134, 582, 1449, 1511, 1575, 1760
BfmI	CTRYAG	4 cut(s)	13, 1155, 2307, 2318
BfuAI	ACCTGC	1 cut(s)	1258
BfuI	GTATCC	2 cut(s)	859, 2575
BglI	GCCNNNNNGGC	1 cut(s)	2293
BglII	AGATCT	2 cut(s)	1451, 1762
BisI	GCNGC	3 cut(s)	759, 1883, 2432
BlsI	GCNGC	3 cut(s)	760, 1884, 2433
BmcAI	AGTACT	1 cut(s)	1550
Bme1390I	CCNGG	1 cut(s)	1340
Bme18I	GGWCC	2 cut(s)	793, 2234
BmeT110I	CYCGRG	2 cut(s)	140, 2387
BmgBI	CACGTC	1 cut(s)	2549
BmgT120I	GGNCC	2 cut(s)	793, 2234
BmiI	GGNNCC	2 cut(s)	85, 1356
BmrFI	CCNGG	1 cut(s)	1340
BmrI	ACTGGG	1 cut(s)	1788
BmsI	GCATC	3 cut(s)	136, 459, 1740
BmtI	GCTAGC	1 cut(s)	47
BmuI	ACTGGG	1 cut(s)	1788
BoxI	GACNNNNGTC	1 cut(s)	1600
BpiI	GAAGAC	4 cut(s)	1730, 1830, 2237, 2604
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	1 cut(s)	263
BpuEI	CTTGAG	8 cut(s)	113, 446, 1367, 1643, 1720, 1802, 1946, 2223
BsaHI	GRCGYC	1 cut(s)	2017
BsaI	GGTCTC	1 cut(s)	1889
BsaJI	CCNNGG	4 cut(s)	463, 613, 1339, 2291
BsaWI	WCCGGW	1 cut(s)	2362
BsaXI	ACNNNNNCTCC	4 cut(s)	1886, 1916, 2195, 2225
Bsc4I	CCNNNNNNNGG	3 cut(s)	1013, 1697, 1972
Bse1I	ACTGG	4 cut(s)	246, 332, 390, 1794
Bse3DI	GCAATG	1 cut(s)	1274
BseAI	TCCGGA	1 cut(s)	2362
BseBI	CCWGG	1 cut(s)	1340
BseDI	CCNNGG	4 cut(s)	463, 613, 1339, 2291
BseGI	GGATG	5 cut(s)	151, 474, 787, 859, 2057
BseLI	CCNNNNNNNGG	3 cut(s)	1013, 1697, 1972
BseMI	GCAATG	1 cut(s)	1274
BseMII	CTCAG	6 cut(s)	15, 525, 726, 1383, 1780, 2445
BseNI	ACTGG	4 cut(s)	246, 332, 390, 1794
BseRI	GAGGAG	7 cut(s)	602, 692, 1088, 1146, 1799, 1943, 2216
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	745, 1869
BshFI	GGCC	2 cut(s)	509, 1701
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	99, 141
BsiHKCI	CYCGRG	2 cut(s)	140, 2387
BsiSI	CCGG	1 cut(s)	2363
BslFI	GGGAC	2 cut(s)	369, 1554
BslI	CCNNNNNNNGG	3 cut(s)	1013, 1697, 1972
BsmAI	GTCTC	5 cut(s)	20, 73, 482, 715, 1889
BsmFI	GGGAC	2 cut(s)	369, 1554
BsmI	GAATGC	2 cut(s)	1037, 2414
BsnI	GGCC	2 cut(s)	509, 1701
Bso31I	GGTCTC	1 cut(s)	1889
BsoBI	CYCGRG	2 cut(s)	140, 2387
Bsp1286I	GDGCHC	3 cut(s)	88, 99, 141
Bsp13I	TCCGGA	1 cut(s)	2362
BspACI	CCGC	4 cut(s)	993, 1647, 1753, 2432
BspANI	GGCC	2 cut(s)	509, 1701
BspCNI	CTCAG	6 cut(s)	16, 524, 725, 1384, 1779, 2446
BspEI	TCCGGA	1 cut(s)	2362
BspHI	TCATGA	2 cut(s)	1516, 2262
BspLI	GGNNCC	2 cut(s)	85, 1356
BspMAI	CTGCAG	1 cut(s)	2311
BspMI	ACCTGC	1 cut(s)	1258
BspOI	GCTAGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	1482
BspT107I	GGYRCC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	1889
BsrDI	GCAATG	1 cut(s)	1274
BsrI	ACTGG	4 cut(s)	246, 332, 390, 1794
BssECI	CCNNGG	4 cut(s)	463, 613, 1339, 2291
BssNI	GRCGYC	1 cut(s)	2017
BssT1I	CCWWGG	3 cut(s)	463, 613, 2291
Bst2UI	CCWGG	1 cut(s)	1340
Bst4CI	ACNGT	6 cut(s)	31, 284, 1156, 1296, 1362, 2188
Bst6I	CTCTTC	2 cut(s)	1626, 2073
BstACI	GRCGYC	1 cut(s)	2017
BstAPI	GCANNNNNTGC	3 cut(s)	83, 2440, 2502
BstC8I	GCNNGC	2 cut(s)	45, 1166
BstDEI	CTNAG	8 cut(s)	24, 435, 511, 712, 1009, 1392, 1766, 2454
BstEII	GGTNACC	1 cut(s)	1343
BstF5I	GGATG	5 cut(s)	151, 474, 787, 859, 2057
BstHHI	GCGC	1 cut(s)	460
BstMAI	GTCTC	5 cut(s)	20, 73, 482, 715, 1889
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 83, 103, 2293, 2440, 2502, 2552
BstNI	CCWGG	1 cut(s)	1340
BstNSI	RCATGY	7 cut(s)	56, 1003, 1039, 1168, 1222, 1601, 1731
BstPAI	GACNNNNGTC	1 cut(s)	1600
BstPI	GGTNACC	1 cut(s)	1343
BstSCI	CCNGG	1 cut(s)	1338
BstSFI	CTRYAG	4 cut(s)	13, 1155, 2307, 2318
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	745, 1869
BstV2I	GAAGAC	4 cut(s)	1730, 1830, 2237, 2604
BstX2I	RGATCY	3 cut(s)	1451, 1474, 1762
BstYI	RGATCY	3 cut(s)	1451, 1474, 1762
BsuI	GTATCC	2 cut(s)	859, 2575
BsuRI	GGCC	2 cut(s)	509, 1701
BtrI	CACGTC	1 cut(s)	2549
BtsCI	GGATG	5 cut(s)	151, 474, 787, 859, 2057
BtsIMutI	CAGTG	4 cut(s)	570, 1358, 1539, 1774
BveI	ACCTGC	1 cut(s)	1258
Cac8I	GCNNGC	2 cut(s)	45, 1166
CaiI	CAGNNNCTG	1 cut(s)	2336
CciI	TCATGA	2 cut(s)	1516, 2262
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	793, 2234
CseI	GACGC	2 cut(s)	1280, 2025
Csp6I	GTAC	3 cut(s)	305, 1549, 2484
CspCI	CAANNNNNGTGG	6 cut(s)	239, 274, 1269, 1304, 1515, 1550
CviQI	GTAC	3 cut(s)	305, 1549, 2484
DdeI	CTNAG	8 cut(s)	24, 435, 511, 712, 1009, 1392, 1766, 2454
DraI	TTTAAA	2 cut(s)	909, 1498
EaeI	YGGCCR	1 cut(s)	1699
Eam1104I	CTCTTC	2 cut(s)	1626, 2073
EarI	CTCTTC	2 cut(s)	1626, 2073
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	3 cut(s)	463, 613, 2291
Eco147I	AGGCCT	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	1889
Eco32I	GATATC	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	793, 2234
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	1713, 2192
Eco88I	CYCGRG	2 cut(s)	140, 2387
Eco91I	GGTNACC	1 cut(s)	1343
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	2234
EcoO65I	GGTNACC	1 cut(s)	1343
EcoRI	GAATTC	1 cut(s)	2087
EcoRII	CCWGG	1 cut(s)	1338
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	3 cut(s)	463, 613, 2291
EcoT22I	ATGCAT	2 cut(s)	1037, 1733
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	3 cut(s)	463, 613, 2291
FalI	AAGNNNNNCTT	2 cut(s)	1608, 1640
FaqI	GGGAC	2 cut(s)	369, 1554
FauI	CCCGC	3 cut(s)	1000, 1654, 1746
FauNDI	CATATG	1 cut(s)	1416
FbaI	TGATCA	1 cut(s)	1956
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	759, 1883, 2432
FokI	GGATG	5 cut(s)	158, 481, 794, 866, 2064
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	759, 1883, 2432
FspBI	CTAG	7 cut(s)	44, 134, 582, 1449, 1511, 1575, 1760
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	3 cut(s)	759, 1883, 2432
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	509, 1701
HapII	CCGG	1 cut(s)	2363
HgaI	GACGC	2 cut(s)	1280, 2025
HhaI	GCGC	1 cut(s)	460
Hin1I	GRCGYC	1 cut(s)	2017
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HindIII	AAGCTT	2 cut(s)	104, 1969
HpaII	CCGG	1 cut(s)	2363
HphI	GGTGA	5 cut(s)	91, 1337, 1987, 2014, 2534
Hpy166II	GTNNAC	4 cut(s)	13, 1313, 1365, 2484
Hpy188I	TCNGA	8 cut(s)	514, 715, 731, 1393, 1612, 1967, 2338, 2575
Hpy188III	TCNNGA	8 cut(s)	1384, 1449, 1517, 1691, 1737, 1781, 2263, 2363
Hpy8I	GTNNAC	4 cut(s)	13, 1313, 1365, 2484
HpyAV	CCTTC	3 cut(s)	1007, 2111, 2225
HpyCH4III	ACNGT	6 cut(s)	31, 284, 1156, 1296, 1362, 2188
HpyCH4IV	ACGT	3 cut(s)	219, 1714, 2548
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 83, 103, 2293, 2440, 2502, 2552
HpyF3I	CTNAG	8 cut(s)	24, 435, 511, 712, 1009, 1392, 1766, 2454
HpySE526I	ACGT	3 cut(s)	219, 1714, 2548
Hsp92I	GRCGYC	1 cut(s)	2017
HspAI	GCGC	1 cut(s)	458
Kpn2I	TCCGGA	1 cut(s)	2362
Ksp22I	TGATCA	1 cut(s)	1956
LmnI	GCTCC	7 cut(s)	929, 1075, 1161, 1224, 1786, 2203, 2417
Lsp1109I	GCAGC	2 cut(s)	745, 1869
LweI	GCATC	3 cut(s)	136, 459, 1740
MaeI	CTAG	7 cut(s)	44, 134, 582, 1449, 1511, 1575, 1760
MaeII	ACGT	3 cut(s)	219, 1714, 2548
MaeIII	GTNAC	3 cut(s)	883, 1343, 2611
MflI	RGATCY	3 cut(s)	1451, 1474, 1762
MhlI	GDGCHC	3 cut(s)	88, 99, 141
MlsI	TGGCCA	1 cut(s)	1701
MluNI	TGGCCA	1 cut(s)	1701
MlyI	GAGTC	2 cut(s)	488, 2564
MmeI	TCCRAC	2 cut(s)	305, 831
Mox20I	TGGCCA	1 cut(s)	1701
Mph1103I	ATGCAT	2 cut(s)	1037, 1733
MroI	TCCGGA	1 cut(s)	2362
MroXI	GAANNNNTTC	2 cut(s)	967, 1590
MscI	TGGCCA	1 cut(s)	1701
MslI	CAYNNNNRTG	1 cut(s)	2052
Msp20I	TGGCCA	1 cut(s)	1701
MspI	CCGG	1 cut(s)	2363
MspR9I	CCNGG	1 cut(s)	1340
Mva1269I	GAATGC	2 cut(s)	1037, 2414
MvaI	CCWGG	1 cut(s)	1340
MwoI	GCNNNNNNNGC	7 cut(s)	53, 83, 103, 2293, 2440, 2502, 2552
NdeI	CATATG	1 cut(s)	1416
NheI	GCTAGC	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	85, 1356
NmuCI	GTSAC	1 cut(s)	1343
NsiI	ATGCAT	2 cut(s)	1037, 1733
NspI	RCATGY	7 cut(s)	56, 1003, 1039, 1168, 1222, 1601, 1731
PaeI	GCATGC	1 cut(s)	1168
PaeR7I	CTCGAG	2 cut(s)	140, 2387
PagI	TCATGA	2 cut(s)	1516, 2262
PceI	AGGCCT	1 cut(s)	509
PciI	ACATGT	2 cut(s)	1218, 1597
PcsI	WCGNNNNNNNCGW	1 cut(s)	2196
PctI	GAATGC	2 cut(s)	1037, 2414
PdmI	GAANNNNTTC	2 cut(s)	967, 1590
PfeI	GAWTC	8 cut(s)	169, 328, 945, 988, 1708, 1740, 2138, 2303
PflFI	GACNNNGTC	1 cut(s)	1900
PkrI	GCNGC	3 cut(s)	760, 1884, 2433
PleI	GAGTC	2 cut(s)	488, 2564
PpsI	GAGTC	2 cut(s)	488, 2564
PpuMI	RGGWCCY	1 cut(s)	2234
PscI	ACATGT	2 cut(s)	1218, 1597
PshAI	GACNNNNGTC	1 cut(s)	1600
PshBI	ATTAAT	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	99
Psp1406I	AACGTT	1 cut(s)	1714
Psp5II	RGGWCCY	1 cut(s)	2234
Psp6I	CCWGG	1 cut(s)	1338
PspEI	GGTNACC	1 cut(s)	1343
PspGI	CCWGG	1 cut(s)	1338
PspN4I	GGNNCC	2 cut(s)	85, 1356
PspPI	GGNCC	2 cut(s)	793, 2234
PspPPI	RGGWCCY	1 cut(s)	2234
PspXI	VCTCGAGB	2 cut(s)	140, 2387
PstI	CTGCAG	1 cut(s)	2311
PstNI	CAGNNNCTG	1 cut(s)	2336
PsuI	RGATCY	3 cut(s)	1451, 1474, 1762
PsyI	GACNNNGTC	1 cut(s)	1900
RsaI	GTAC	3 cut(s)	306, 1550, 2485
RsaNI	GTAC	3 cut(s)	305, 1549, 2484
RseI	CAYNNNNRTG	1 cut(s)	2052
SacI	GAGCTC	1 cut(s)	99
SatI	GCNGC	3 cut(s)	759, 1883, 2432
Sau96I	GGNCC	2 cut(s)	793, 2234
ScaI	AGTACT	1 cut(s)	1550
SchI	GAGTC	2 cut(s)	488, 2564
ScrFI	CCNGG	1 cut(s)	1340
SduI	GDGCHC	3 cut(s)	88, 99, 141
SfaNI	GCATC	3 cut(s)	136, 459, 1740
SfcI	CTRYAG	4 cut(s)	13, 1155, 2307, 2318
Sfr274I	CTCGAG	2 cut(s)	140, 2387
SinI	GGWCC	2 cut(s)	793, 2234
SlaI	CTCGAG	2 cut(s)	140, 2387
SmiMI	CAYNNNNRTG	1 cut(s)	2052
SpeI	ACTAGT	1 cut(s)	133
SphI	GCATGC	1 cut(s)	1168
SseBI	AGGCCT	1 cut(s)	509
SsiI	CCGC	4 cut(s)	993, 1647, 1753, 2432
SspI	AATATT	2 cut(s)	595, 1243
SspMI	CTAG	7 cut(s)	44, 134, 582, 1449, 1511, 1575, 1760
SstI	GAGCTC	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	1338
StyI	CCWWGG	3 cut(s)	463, 613, 2291
TaaI	ACNGT	6 cut(s)	31, 284, 1156, 1296, 1362, 2188
TaiI	ACGT	3 cut(s)	222, 1717, 2551
TaqI	TCGA	8 cut(s)	141, 276, 1594, 2085, 2190, 2248, 2388, 2568
TatI	WGTACW	2 cut(s)	1548, 2483
TauI	GCSGC	1 cut(s)	2434
TfiI	GAWTC	8 cut(s)	169, 328, 945, 988, 1708, 1740, 2138, 2303
TscAI	CASTG	4 cut(s)	577, 1365, 1539, 1774
TseFI	GTSAC	1 cut(s)	1343
TseI	GCWGC	2 cut(s)	758, 1882
Tsp45I	GTSAC	1 cut(s)	1343
TspGWI	ACGGA	2 cut(s)	884, 1556
TspRI	CASTG	4 cut(s)	577, 1365, 1539, 1774
Tth111I	GACNNNGTC	1 cut(s)	1900
VpaK11BI	GGWCC	2 cut(s)	793, 2234
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	4 cut(s)	682, 1888, 2087, 2381
XbaI	TCTAGA	1 cut(s)	1448
XceI	RCATGY	7 cut(s)	56, 1003, 1039, 1168, 1222, 1601, 1731
XhoI	CTCGAG	2 cut(s)	140, 2387
XmiI	GTMKAC	1 cut(s)	12
XmnI	GAANNNNTTC	2 cut(s)	967, 1590
XspI	CTAG	7 cut(s)	44, 134, 582, 1449, 1511, 1575, 1760
ZrmI	AGTACT	1 cut(s)	1550
Zsp2I	ATGCAT	2 cut(s)	1037, 1733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.