Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Forward (+)

17049535 .. 17052549

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17860.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGGGAAGGCGCGAGGTTTCAGCTGGGGACAGTGGGAGCGTTGACCCTCTCTGTGGTCTCGTCGGTCTCCATTGTCATTTGCAACAAGGCCCTCATTAGTTCTTTGGGTTTCACTTTTGCCACAACTTTGACAAGCTGGCATCTTTTAGTCACCTTTTGTTCCCTTCACGTGGCTTTAAAGATGAAATTCTTTGAGCACAAACCGCTTGATCAAACAACTGTGACGGGGTTTGGCATTCTGAATGGAATCTCAATTGGACTGTTAAATCTGAGCCTGGGGTTCAATTCAGTTGGCTTTTATCAGATGACTAAGCTGGCAATCATCCCTTGTACTGTACTATTGGAGACCCTTTTTCTAGCGAAGAAATTCAGTAGGAGCATTCAGATTGCCCTCCTTGTTCTGCTCCTTGGTGTTGGGATTGCAACAGTCACTGATGTTCAACTTAATGCTCTTGGAAGTATCTTGTCTCTTCTTGCAGTTATTACAACATGCGTTGCCCAAATTATGACCAATACCATCCAAAAGAAGTTTAAGGTTTCTTCAACACAACTTCTGTATCAATCATGTCCATATCAATCTGGAACTTTATTAATCACTGGCCCGTTTCTGGATTGGTTCTTGACGAATCAAAATGTATTTGCTTTCAAGTATACAACTCAAGTGCTGGTTTTCATAATTATATCCTGCCTAATCTCCGTCTCTGTAAACTTTAGCACATTTCTTGTGATCGGAAAGACATCTCCTGTCACCTATCAAGTTCTAGGACATCTAAAGACATGCCTTGTGCTGGCATTTGGTTATATTTTGCTTCATGATCCATTTGACTGGAGGAACATCCTCGGAATATTAGTCGCACTTGCTGGGATGGTTTTATATTCTTACTTTTGCACTCGTGAGGGTCAGAAAAAGGCTGCTGAAGAAGCAACGCAGCCACCACAGGCAGGAGAGGGTGAGTCTGATCCTCTAATGGGGGTGGAAAACGGAAGCGGTGTAGGAACTGATTCTGCTCCCCAAATTGCCCCTGTATGGAAGTTGAACAAAGATTTGCATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

353

Amino Acids

38.05

Weight (kDa)

8.57

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	653
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	206, 990
AclWI	GGATC	2 cut(s)	812, 956
AcsI	RAATTY	2 cut(s)	188, 368
AcuI	CTGAAG	1 cut(s)	939
AcvI	CACGTG	1 cut(s)	172
AfaI	GTAC	2 cut(s)	334, 339
AfiI	CCNNNNNNNGG	7 cut(s)	55, 172, 610, 790, 944, 971, 1029
AgsI	TTSAA	5 cut(s)	286, 443, 546, 649, 1039
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	3 cut(s)	25, 138, 316
AluI	AGCT	3 cut(s)	25, 138, 316
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	5 cut(s)	64, 73, 341, 474, 706
AlwI	GGATC	2 cut(s)	812, 956
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	90, 601
ApeKI	GCWGC	2 cut(s)	914, 931
ApoI	RAATTY	2 cut(s)	188, 368
AseI	ATTAAT	1 cut(s)	593
Asp700I	GAANNNNTTC	2 cut(s)	368, 1003
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	91, 602
AsuHPI	GGTGA	3 cut(s)	145, 742, 965
BaeI	ACNNNNGTAYC	2 cut(s)	542, 575
BauI	CACGAG	1 cut(s)	894
BbrPI	CACGTG	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	901, 943
BccI	CCATC	2 cut(s)	527, 862
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	5 cut(s)	64, 73, 341, 474, 706
BfaI	CTAG	2 cut(s)	359, 764
BisI	GCNGC	2 cut(s)	915, 932
BlsI	GCNGC	2 cut(s)	916, 933
Bme1390I	CCNGG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	91, 602
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	850
BpuEI	CTTGAG	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	172
BsaI	GGTCTC	3 cut(s)	64, 73, 341
BsaJI	CCNNGG	3 cut(s)	277, 409, 841
Bsc4I	CCNNNNNNNGG	7 cut(s)	55, 172, 610, 790, 944, 971, 1029
Bse1I	ACTGG	2 cut(s)	604, 833
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	277, 409, 841
BseGI	GGATG	4 cut(s)	324, 519, 837, 873
BseLI	CCNNNNNNNGG	7 cut(s)	55, 172, 610, 790, 944, 971, 1029
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	604, 833
BseXI	GCAGC	2 cut(s)	901, 943
BseYI	CCCAGC	2 cut(s)	25, 863
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	92, 603
BsiHKAI	GWGCWC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	7 cut(s)	55, 172, 610, 790, 944, 971, 1029
BsmAI	GTCTC	5 cut(s)	64, 73, 341, 474, 706
BsmBI	CGTCTC	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	43
BsmI	GAATGC	2 cut(s)	237, 381
BsnI	GGCC	2 cut(s)	92, 603
Bso31I	GGTCTC	3 cut(s)	64, 73, 341
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	211, 729, 817, 961
BspACI	CCGC	2 cut(s)	206, 990
BspANI	GGCC	2 cut(s)	92, 603
BspCNI	CTCAG	1 cut(s)	264
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	814
BspPI	GGATC	2 cut(s)	812, 956
BspTNI	GGTCTC	3 cut(s)	64, 73, 341
BsrI	ACTGG	2 cut(s)	604, 833
BssECI	CCNNGG	3 cut(s)	277, 409, 841
BssMI	GATC	4 cut(s)	211, 729, 817, 961
BssNAI	GTATAC	1 cut(s)	654
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	1 cut(s)	409
Bst1107I	GTATAC	1 cut(s)	654
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	5 cut(s)	34, 223, 264, 337, 430
Bst6I	CTCTTC	1 cut(s)	477
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	4 cut(s)	140, 318, 792, 1053
BstDEI	CTNAG	2 cut(s)	272, 312
BstF5I	GGATG	4 cut(s)	324, 519, 837, 873
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	4 cut(s)	214, 732, 820, 964
BstMAI	GTCTC	5 cut(s)	64, 73, 341, 474, 706
BstMBI	GATC	4 cut(s)	211, 729, 817, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 923
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	3 cut(s)	495, 783, 1055
BstSCI	CCNGG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	901, 943
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstZ17I	GTATAC	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	92, 603
BtsCI	GGATG	4 cut(s)	324, 519, 837, 873
BtsIMutI	CAGTG	3 cut(s)	39, 432, 597
Cac8I	GCNNGC	4 cut(s)	140, 318, 792, 1053
CaiI	CAGNNNCTG	1 cut(s)	434
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	91, 602
Csp6I	GTAC	2 cut(s)	333, 338
CviAII	CATG	5 cut(s)	492, 567, 780, 815, 1052
CviQI	GTAC	2 cut(s)	333, 338
DdeI	CTNAG	2 cut(s)	272, 312
DpnI	GATC	4 cut(s)	213, 731, 819, 963
DpnII	GATC	4 cut(s)	211, 729, 817, 961
DraI	TTTAAA	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	409
Eco31I	GGTCTC	3 cut(s)	64, 73, 341
Eco57I	CTGAAG	1 cut(s)	939
Eco72I	CACGTG	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	706
FaeI	CATG	5 cut(s)	495, 570, 783, 818, 1055
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	5 cut(s)	491, 566, 779, 814, 1051
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	2 cut(s)	915, 932
FokI	GGATG	4 cut(s)	311, 506, 824, 880
Fsp4HI	GCNGC	2 cut(s)	915, 932
FspBI	CTAG	2 cut(s)	359, 764
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	915, 932
GsaI	CCCAGC	2 cut(s)	29, 867
GsuI	CTGGAG	1 cut(s)	850
HaeIII	GGCC	2 cut(s)	92, 603
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	5 cut(s)	495, 570, 783, 818, 1055
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	4 cut(s)	249, 628, 956, 1004
HphI	GGTGA	3 cut(s)	145, 742, 965
Hpy166II	GTNNAC	3 cut(s)	45, 654, 709
Hpy188I	TCNGA	8 cut(s)	243, 273, 306, 387, 734, 845, 906, 961
Hpy188III	TCNNGA	5 cut(s)	582, 611, 622, 815, 896
Hpy8I	GTNNAC	3 cut(s)	45, 654, 709
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	5 cut(s)	34, 223, 264, 337, 430
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	84, 425, 479, 891, 1051
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 923
HpyF3I	CTNAG	2 cut(s)	272, 312
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	495, 570, 783, 818, 1055
HspAI	GCGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	211, 729, 817, 961
LmnI	GCTCC	4 cut(s)	38, 378, 411, 1015
Lsp1109I	GCAGC	2 cut(s)	901, 943
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	359, 764
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	4 cut(s)	151, 223, 430, 748
MalI	GATC	4 cut(s)	213, 731, 819, 963
MboI	GATC	4 cut(s)	211, 729, 817, 961
MboII	GAAGA	4 cut(s)	376, 464, 534, 932
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	7 cut(s)	188, 255, 286, 368, 504, 678, 1017
MlyI	GAGTC	1 cut(s)	965
MnlI	CCTC	9 cut(s)	9, 59, 104, 404, 825, 851, 892, 943, 975
MroXI	GAANNNNTTC	2 cut(s)	368, 1003
MseI	TTAA	5 cut(s)	179, 266, 447, 534, 593
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	2 cut(s)	237, 381
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	205, 923
NdeII	GATC	4 cut(s)	211, 729, 817, 961
NlaIII	CATG	5 cut(s)	495, 570, 783, 818, 1055
NmuCI	GTSAC	4 cut(s)	151, 223, 430, 748
NspI	RCATGY	3 cut(s)	495, 783, 1055
PaeI	GCATGC	1 cut(s)	1055
PagI	TCATGA	1 cut(s)	814
PctI	GAATGC	2 cut(s)	237, 381
PdmI	GAANNNNTTC	2 cut(s)	368, 1003
PfeI	GAWTC	3 cut(s)	249, 628, 1004
PkrI	GCNGC	2 cut(s)	916, 933
PleI	GAGTC	1 cut(s)	964
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	964
Ppu21I	YACGTR	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	276
PspCI	CACGTG	1 cut(s)	172
PspFI	CCCAGC	2 cut(s)	25, 863
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	91, 602
PstNI	CAGNNNCTG	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	334, 339
RsaNI	GTAC	2 cut(s)	333, 338
SaqAI	TTAA	5 cut(s)	179, 266, 447, 534, 593
SatI	GCNGC	2 cut(s)	915, 932
Sau3AI	GATC	4 cut(s)	211, 729, 817, 961
Sau96I	GGNCC	2 cut(s)	91, 602
SchI	GAGTC	1 cut(s)	965
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	8 cut(s)	20, 27, 140, 158, 174, 318, 540, 755
SfaNI	GCATC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
SphI	GCATGC	1 cut(s)	1055
Sse9I	AATT	7 cut(s)	188, 255, 286, 368, 504, 678, 1017
SsiI	CCGC	2 cut(s)	206, 990
SspI	AATATT	1 cut(s)	849
SspMI	CTAG	2 cut(s)	359, 764
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	5 cut(s)	34, 223, 264, 337, 430
TaiI	ACGT	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	7 cut(s)	188, 255, 286, 368, 504, 678, 1017
TatI	WGTACW	2 cut(s)	332, 337
TfiI	GAWTC	3 cut(s)	249, 628, 1004
Tru1I	TTAA	5 cut(s)	179, 266, 447, 534, 593
Tru9I	TTAA	5 cut(s)	179, 266, 447, 534, 593
TscAI	CASTG	3 cut(s)	39, 439, 604
TseFI	GTSAC	4 cut(s)	151, 223, 430, 748
TseI	GCWGC	2 cut(s)	914, 931
Tsp45I	GTSAC	4 cut(s)	151, 223, 430, 748
TspDTI	ATGAA	3 cut(s)	200, 664, 803
TspGWI	ACGGA	2 cut(s)	688, 999
TspRI	CASTG	3 cut(s)	39, 439, 604
VspI	ATTAAT	1 cut(s)	593
XapI	RAATTY	2 cut(s)	188, 368
XceI	RCATGY	3 cut(s)	495, 783, 1055
XmiI	GTMKAC	1 cut(s)	653
XmnI	GAANNNNTTC	2 cut(s)	368, 1003
XspI	CTAG	2 cut(s)	359, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.