Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Reverse (-)

78787119 .. 78790635

Gene Structure 3517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGAGAGAGCCAGAAGTTCCAGATGGGAACCATTGGGGCTCTGAGTTTGTCGGTGGTGTCGTCCGTGTCGATTGTCATTTGCAACAAGGCTCTTATTAGCACACTTGGTTTTACTTTTGCCACTACTTTGACGAGCTGGCATCTTCTGGTCACATTTTGTTCTCTTCACGTAGCATTATGGATGAAAATGTTTGAGCACAAGCCTTTTGATGCTAGTTCTGTAATGAGTTTTGGAATTTTAAATGGGATCTCTATTGGACTTCTGAATCTCAGCCTGGGTTTCAATTCTGTTGGTTTCTACCAGATGACAAAACTAGCAATCATTCCTTGTACTGTTCTTTTGGAGACCCTTTTCTTTAGGAAGAAATTCAGCCGAAGTATCCAGTTTTCTCTCAGCATCCTTCTTATGGGCGTTGGAGTTGCAACAGTGACTGATCTTCAGCTCAATGCCCTGGGTTCTTTTTTGTCCCTGCTGGCAGTTATTACAACCTGTGTTGCTCAGATTATGACCAATACCATCCAGAAGAAGTTCAAAGTTTCTTCAACCCAACTTCTGTATCAGTCTTGCCCTTATCAGGCAATATCCTTGTTTATCATTGGTCCATTTCTAGATGGATTTCTGACTAATCAAAATGTTTTTGCCTTCGAATATACCCCGCAAGTGCTGTTCTTCATTGTTCTATCCTGCCTGATATCTGTCTCTGTAAACTTCAGTACGTTTTTGGTTATTGGAAAGACGTCTGCGGTAACCTATCAGGTCCTCGGACATTTGAAAACATGCCTTGTTTTGACATTTGGCTACACTCTACTTCACGACCCATTTGACTGGCGCAACATTTTAGGGATATTGATTGCCGTGCTCGGAATGGTACTCTATTCTTATTATTGCTCTCGTGAGAGCCAGCGGAAGGCTAGTGAAGCATCTCAACAGTTGCCACAGACAAAAGAGAGTGAAGCGGATCCTTTATTAGCAATGGAAAATGGAACTGGGATGCTAGGGGAGGATGGTGCTGTTCAGAAAGGCCCTGTGTGGAATTCGAACAAGGACCTACATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

353

Amino Acids

38.75

Weight (kDa)

8.36

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	21 - 294	5.9e-17	Triose-phosphate Transporter family
EamA	PF00892	158 - 294	6.5e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	743
AciI	CCGC	4 cut(s)	659, 746, 907, 959
AclWI	GGATC	3 cut(s)	257, 956, 969
AcsI	RAATTY	3 cut(s)	237, 368, 1036
AcuI	CTGAAG	2 cut(s)	425, 697
AcyI	GRCGYC	1 cut(s)	740
AfaI	GTAC	3 cut(s)	334, 718, 873
AfiI	CCNNNNNNNGG	3 cut(s)	409, 577, 910
AgsI	TTSAA	4 cut(s)	286, 535, 546, 775
AjnI	CCWGG	2 cut(s)	276, 453
AluBI	AGCT	2 cut(s)	138, 445
AluI	AGCT	2 cut(s)	138, 445
Alw21I	GWGCWC	2 cut(s)	201, 864
Alw26I	GTCTC	2 cut(s)	341, 706
AlwI	GGATC	3 cut(s)	257, 956, 969
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	1 cut(s)	1024
ApoI	RAATTY	3 cut(s)	237, 368, 1036
Asp700I	GAANNNNTTC	2 cut(s)	368, 530
AspLEI	GCGC	1 cut(s)	834
AspS9I	GGNCC	4 cut(s)	602, 760, 1025, 1048
AsuII	TTCGAA	2 cut(s)	648, 1040
AvaII	GGWCC	3 cut(s)	602, 760, 1048
BaeI	ACNNNNGTAYC	2 cut(s)	542, 575
BamHI	GGATCC	1 cut(s)	961
BanII	GRGCYC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	894
Bbv12I	GWGCWC	2 cut(s)	201, 864
BccI	CCATC	4 cut(s)	19, 527, 608, 1001
BceAI	ACGGC	1 cut(s)	842
BciT130I	CCWGG	2 cut(s)	278, 455
BciVI	GTATCC	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	341, 706
BfaI	CTAG	5 cut(s)	216, 317, 611, 915, 998
BfuI	GTATCC	1 cut(s)	392
Bme1390I	CCNGG	2 cut(s)	278, 455
Bme18I	GGWCC	3 cut(s)	602, 760, 1048
BmgT120I	GGNCC	4 cut(s)	602, 760, 1025, 1048
BmiI	GGNNCC	2 cut(s)	31, 963
BmrFI	CCNGG	2 cut(s)	278, 455
BmrI	ACTGGG	1 cut(s)	999
BmsI	GCATC	5 cut(s)	151, 202, 408, 932, 984
BmuI	ACTGGG	1 cut(s)	999
Bpu14I	TTCGAA	2 cut(s)	648, 1040
BsaAI	YACGTR	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	740
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	4 cut(s)	277, 453, 454, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	409, 577, 910
Bse1I	ACTGG	3 cut(s)	385, 833, 994
Bse3DI	GCAATG	1 cut(s)	981
BseBI	CCWGG	2 cut(s)	278, 455
BseDI	CCNNGG	4 cut(s)	277, 453, 454, 763
BseGI	GGATG	5 cut(s)	189, 399, 519, 999, 1012
BseLI	CCNNNNNNNGG	3 cut(s)	409, 577, 910
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	4 cut(s)	35, 286, 409, 515
BseNI	ACTGG	3 cut(s)	385, 833, 994
BshFI	GGCC	1 cut(s)	1026
BsiHKAI	GWGCWC	2 cut(s)	201, 864
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	3 cut(s)	409, 577, 910
BsmAI	GTCTC	2 cut(s)	341, 706
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	1026
Bso31I	GGTCTC	1 cut(s)	341
Bsp119I	TTCGAA	2 cut(s)	648, 1040
Bsp1286I	GDGCHC	3 cut(s)	43, 201, 864
Bsp143I	GATC	3 cut(s)	249, 436, 961
BspACI	CCGC	4 cut(s)	659, 746, 907, 959
BspANI	GGCC	1 cut(s)	1026
BspCNI	CTCAG	4 cut(s)	36, 285, 408, 514
BspLI	GGNNCC	2 cut(s)	31, 963
BspPI	GGATC	3 cut(s)	257, 956, 969
BspT104I	TTCGAA	2 cut(s)	648, 1040
BspTNI	GGTCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	981
BsrI	ACTGG	3 cut(s)	385, 833, 994
BssECI	CCNNGG	4 cut(s)	277, 453, 454, 763
BssMI	GATC	3 cut(s)	249, 436, 961
BssNI	GRCGYC	1 cut(s)	740
BssSI	CACGAG	1 cut(s)	894
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	2 cut(s)	278, 455
Bst4CI	ACNGT	3 cut(s)	337, 430, 933
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	740
BstBAI	YACGTR	1 cut(s)	172
BstBI	TTCGAA	2 cut(s)	648, 1040
BstC8I	GCNNGC	3 cut(s)	140, 477, 905
BstDEI	CTNAG	4 cut(s)	44, 272, 395, 501
BstEII	GGTNACC	1 cut(s)	748
BstF5I	GGATG	5 cut(s)	189, 399, 519, 999, 1012
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	3 cut(s)	252, 439, 964
BstMAI	GTCTC	2 cut(s)	341, 706
BstMBI	GATC	3 cut(s)	249, 436, 961
BstMWI	GCNNNNNNNGC	1 cut(s)	920
BstNI	CCWGG	2 cut(s)	278, 455
BstNSI	RCATGY	2 cut(s)	783, 1058
BstPI	GGTNACC	1 cut(s)	748
BstSCI	CCNGG	2 cut(s)	276, 453
BstX2I	RGATCY	2 cut(s)	249, 961
BstXI	CCANNNNNNTGG	1 cut(s)	828
BstYI	RGATCY	2 cut(s)	249, 961
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	1026
BtsCI	GGATG	5 cut(s)	189, 399, 519, 999, 1012
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	3 cut(s)	140, 477, 905
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	834
Cfr13I	GGNCC	4 cut(s)	602, 760, 1025, 1048
Csp6I	GTAC	3 cut(s)	333, 717, 872
CviAII	CATG	2 cut(s)	780, 1055
CviQI	GTAC	3 cut(s)	333, 717, 872
DdeI	CTNAG	4 cut(s)	44, 272, 395, 501
DpnI	GATC	3 cut(s)	251, 438, 963
DpnII	GATC	3 cut(s)	249, 436, 961
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	696
Eco47I	GGWCC	3 cut(s)	602, 760, 1048
Eco57I	CTGAAG	2 cut(s)	425, 697
Eco91I	GGTNACC	1 cut(s)	748
EcoO109I	RGGNCCY	3 cut(s)	760, 1025, 1048
EcoO65I	GGTNACC	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	1036
EcoRII	CCWGG	2 cut(s)	276, 453
EcoRV	GATATC	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	2 cut(s)	783, 1058
FaiI	YATR	6 cut(s)	181, 410, 509, 654, 781, 1056
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	2 cut(s)	779, 1054
FauI	CCCGC	1 cut(s)	666
FokI	GGATG	5 cut(s)	196, 386, 506, 1006, 1019
FriOI	GRGCYC	1 cut(s)	43
FspBI	CTAG	5 cut(s)	216, 317, 611, 915, 998
GlaI	GCGC	1 cut(s)	833
HaeIII	GGCC	1 cut(s)	1026
HhaI	GCGC	1 cut(s)	834
Hin1I	GRCGYC	1 cut(s)	740
Hin1II	CATG	2 cut(s)	783, 1058
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HinfI	GANTC	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	7 cut(s)	45, 267, 504, 624, 767, 866, 1020
Hpy188III	TCNNGA	5 cut(s)	22, 523, 611, 815, 896
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	3 cut(s)	413, 655, 904
HpyCH4III	ACNGT	3 cut(s)	337, 430, 933
HpyCH4IV	ACGT	3 cut(s)	171, 719, 740
HpyCH4V	TGCA	2 cut(s)	84, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	920
HpyF3I	CTNAG	4 cut(s)	44, 272, 395, 501
HpySE526I	ACGT	3 cut(s)	171, 719, 740
Hsp92I	GRCGYC	1 cut(s)	740
Hsp92II	CATG	2 cut(s)	783, 1058
HspAI	GCGC	1 cut(s)	832
Kzo9I	GATC	3 cut(s)	249, 436, 961
LweI	GCATC	5 cut(s)	151, 202, 408, 932, 984
MaeI	CTAG	5 cut(s)	216, 317, 611, 915, 998
MaeII	ACGT	3 cut(s)	171, 719, 740
MaeIII	GTNAC	3 cut(s)	151, 430, 748
MalI	GATC	3 cut(s)	251, 438, 963
MboI	GATC	3 cut(s)	249, 436, 961
MboII	GAAGA	7 cut(s)	137, 158, 376, 431, 534, 538, 664
MflI	RGATCY	2 cut(s)	249, 961
MhlI	GDGCHC	3 cut(s)	43, 201, 864
MluCI	AATT	4 cut(s)	237, 286, 368, 1036
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	2 cut(s)	773, 997
MroXI	GAANNNNTTC	2 cut(s)	368, 530
MseI	TTAA	2 cut(s)	242, 1060
MspA1I	CMGCKG	1 cut(s)	907
MspR9I	CCNGG	2 cut(s)	278, 455
MvaI	CCWGG	2 cut(s)	278, 455
MwoI	GCNNNNNNNGC	1 cut(s)	920
NdeII	GATC	3 cut(s)	249, 436, 961
NlaIII	CATG	2 cut(s)	783, 1058
NlaIV	GGNNCC	2 cut(s)	31, 963
NmuCI	GTSAC	2 cut(s)	151, 430
NspI	RCATGY	2 cut(s)	783, 1058
NspV	TTCGAA	2 cut(s)	648, 1040
PasI	CCCWGGG	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 68
PdmI	GAANNNNTTC	2 cut(s)	368, 530
PfeI	GAWTC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	172
PpuMI	RGGWCCY	2 cut(s)	760, 1048
Psp5II	RGGWCCY	2 cut(s)	760, 1048
Psp6I	CCWGG	2 cut(s)	276, 453
PspEI	GGTNACC	1 cut(s)	748
PspGI	CCWGG	2 cut(s)	276, 453
PspN4I	GGNNCC	2 cut(s)	31, 963
PspPI	GGNCC	4 cut(s)	602, 760, 1025, 1048
PspPPI	RGGWCCY	2 cut(s)	760, 1048
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	249, 961
RsaI	GTAC	3 cut(s)	334, 718, 873
RsaNI	GTAC	3 cut(s)	333, 717, 872
SaqAI	TTAA	2 cut(s)	242, 1060
Sau3AI	GATC	3 cut(s)	249, 436, 961
Sau96I	GGNCC	4 cut(s)	602, 760, 1025, 1048
ScrFI	CCNGG	2 cut(s)	278, 455
SduI	GDGCHC	3 cut(s)	43, 201, 864
SetI	ASST	9 cut(s)	140, 174, 447, 494, 722, 743, 755, 762, 1053
SfaNI	GCATC	5 cut(s)	151, 202, 408, 932, 984
SfuI	TTCGAA	2 cut(s)	648, 1040
SinI	GGWCC	3 cut(s)	602, 760, 1048
Sse9I	AATT	4 cut(s)	237, 286, 368, 1036
SsiI	CCGC	4 cut(s)	659, 746, 907, 959
SspMI	CTAG	5 cut(s)	216, 317, 611, 915, 998
StyD4I	CCNGG	2 cut(s)	276, 453
TaaI	ACNGT	3 cut(s)	337, 430, 933
TaiI	ACGT	3 cut(s)	174, 722, 743
TaqI	TCGA	3 cut(s)	71, 648, 1040
TasI	AATT	4 cut(s)	237, 286, 368, 1036
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	242, 1060
Tru9I	TTAA	2 cut(s)	242, 1060
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	2 cut(s)	151, 430
Tsp45I	GTSAC	2 cut(s)	151, 430
TspDTI	ATGAA	2 cut(s)	200, 664
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	3 cut(s)	602, 760, 1048
XapI	RAATTY	3 cut(s)	237, 368, 1036
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	2 cut(s)	783, 1058
XmnI	GAANNNNTTC	2 cut(s)	368, 530
XspI	CTAG	5 cut(s)	216, 317, 611, 915, 998
ZraI	GACGTC	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.