Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Reverse (-)

12976074 .. 12978949

Gene Structure 2876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30460.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGCGATGCCCAGAAGTTCCAGCTTGGAACAATCGGCGCTTTGAGTTTATCCGTTGTGTCCTCTGTTTCGATCGTGATCTGTAACAAGGCCCTTATTAGCACCCTTGGTTTCACATTTGCAACTACTTTGACAAGCTGGCATCTTTTGGTGACATTTTGTTCACTTCATGTGGCATTATGGATGAAGTTTTTTGAGCACAAGCCTTTTGATCCACGAGCTGTCCTGGGATTTGGTGTATTAAATGGTATATCCATTGGATTATTAAATCTCAGCTTGGGTTTTAATTCTGTTGGTTTTTACCAGATGACAAAACTTGCAATCATCCCCTGTACTGTTGTCTTAGAGACCATCTTCTTCAGAAAGATGTTCAGTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCTTGGTGTTGGAATTGCAACCGTAACAGATCTCCAGCTTAATATGCTGGGTTCTGTCTTGTCGCTACTGGCTGTTATCACAACTTGTGTTGCCCAAATTATGACCAATACGATCCAGAAGAAATATAAGGTTTCATCCACCCAACTTCTGTATCAGTCTTGCCCATATCAAGCAATCACACTTTTTGTTACTGGCCCATTTTTAGATGGTCTCTTAACCAACCAGAACGTGTTTGCTTTCAAATACACGTCTCAAGTTGTGTTCTTCATCGTCTTGTCCTGCCTCATATCTGTTTCAGTAAACTTCAGCACGTTTCTCGTCATTGGAAAGACATCTCCTGTCACTTATCAGGTTCTAGGACATCTAAAAACATGCTTAGTGTTAGCATTTGGGTATCTTTTGCTGAAAGACGCATTCAGCTGGCGCAACATTCTTGGTATTCTTGTCGCCGTGATTGGAATGGTGCTTTATTCCTATTACTGCACACTCGAAACCCAACAGAAGGCCACAGAAACATCAACTCAATTGCCTCAGATGGATGAAAACGAGAAAGATCCGCTAGTTAGTGCGGAAAACGGGAGCGGATTGATATCAGACAATGGAGTGCAAAAGCAGGATCCTGTATGGAATTCAAACAAAGATTTTCAAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

353

Amino Acids

38.83

Weight (kDa)

8.7

Isoelectric Point (pI)

27.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	7 - 273	1.1e-18	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	990
AciI	CCGC	3 cut(s)	965, 977, 990
AclWI	GGATC	5 cut(s)	206, 514, 956, 1019, 1032
AcsI	RAATTY	1 cut(s)	1036
AcuI	CTGAAG	2 cut(s)	343, 697
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	910
AflIII	ACRYGT	2 cut(s)	636, 654
AgsI	TTSAA	3 cut(s)	649, 1041, 1055
AjiI	CACGTC	1 cut(s)	657
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	6 cut(s)	25, 138, 221, 276, 445, 828
AluI	AGCT	6 cut(s)	25, 138, 221, 276, 445, 828
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	3 cut(s)	341, 623, 663
AlwI	GGATC	5 cut(s)	206, 514, 956, 1019, 1032
AoxI	GGCC	3 cut(s)	90, 601, 912
ApoI	RAATTY	1 cut(s)	1036
AspLEI	GCGC	2 cut(s)	41, 834
AspS9I	GGNCC	2 cut(s)	91, 602
AsuHPI	GGTGA	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	542, 575
BamHI	GGATCC	1 cut(s)	1024
BauI	CACGAG	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	3 cut(s)	359, 608, 937
BceAI	ACGGC	1 cut(s)	842
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	3 cut(s)	341, 623, 663
BfaI	CTAG	2 cut(s)	764, 968
BfoI	RGCGCY	1 cut(s)	42
BglII	AGATCT	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	657
BmgT120I	GGNCC	2 cut(s)	91, 602
BmiI	GGNNCC	1 cut(s)	1026
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	645
BsaBI	GATNNNNATC	2 cut(s)	77, 997
BsaI	GGTCTC	2 cut(s)	341, 623
BsaJI	CCNNGG	3 cut(s)	106, 226, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse1I	ACTGG	3 cut(s)	385, 480, 604
Bse8I	GATNNNNATC	2 cut(s)	77, 997
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	106, 226, 409
BseGI	GGATG	5 cut(s)	189, 324, 399, 542, 952
BseJI	GATNNNNATC	2 cut(s)	77, 997
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMII	CTCAG	2 cut(s)	286, 953
BseNI	ACTGG	3 cut(s)	385, 480, 604
BseYI	CCCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	874
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	92, 603, 914
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmAI	GTCTC	3 cut(s)	341, 623, 663
BsmBI	CGTCTC	1 cut(s)	663
BsmI	GAATGC	1 cut(s)	821
BsnI	GGCC	3 cut(s)	92, 603, 914
Bso31I	GGTCTC	2 cut(s)	341, 623
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	7 cut(s)	72, 78, 211, 436, 519, 961, 1024
BspACI	CCGC	3 cut(s)	965, 977, 990
BspANI	GGCC	3 cut(s)	92, 603, 914
BspCNI	CTCAG	2 cut(s)	285, 952
BspLI	GGNNCC	1 cut(s)	1026
BspPI	GGATC	5 cut(s)	206, 514, 956, 1019, 1032
BspTNI	GGTCTC	2 cut(s)	341, 623
BsrBI	CCGCTC	1 cut(s)	990
BsrI	ACTGG	3 cut(s)	385, 480, 604
BssECI	CCNNGG	3 cut(s)	106, 226, 409
BssMI	GATC	7 cut(s)	72, 78, 211, 436, 519, 961, 1024
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	2 cut(s)	106, 409
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	337, 430
BstC8I	GCNNGC	2 cut(s)	140, 830
BstDEI	CTNAG	4 cut(s)	272, 343, 784, 939
BstF5I	GGATG	5 cut(s)	189, 324, 399, 542, 952
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 834
BstKTI	GATC	7 cut(s)	75, 81, 214, 439, 522, 964, 1027
BstMAI	GTCTC	3 cut(s)	341, 623, 663
BstMBI	GATC	7 cut(s)	72, 78, 211, 436, 519, 961, 1024
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	451
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	783
BstSCI	CCNGG	1 cut(s)	225
BstX2I	RGATCY	3 cut(s)	436, 961, 1024
BstYI	RGATCY	3 cut(s)	436, 961, 1024
BsuRI	GGCC	3 cut(s)	92, 603, 914
BtgZI	GCGATG	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	657
BtsCI	GGATG	5 cut(s)	189, 324, 399, 542, 952
Cac8I	GCNNGC	2 cut(s)	140, 830
CfoI	GCGC	2 cut(s)	41, 834
Cfr13I	GGNCC	2 cut(s)	91, 602
CseI	GACGC	1 cut(s)	827
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	2 cut(s)	170, 780
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	4 cut(s)	272, 343, 784, 939
DpnI	GATC	7 cut(s)	74, 80, 213, 438, 521, 963, 1026
DpnII	GATC	7 cut(s)	72, 78, 211, 436, 519, 961, 1024
Eco130I	CCWWGG	2 cut(s)	106, 409
Eco31I	GGTCTC	2 cut(s)	341, 623
Eco32I	GATATC	1 cut(s)	999
Eco57I	CTGAAG	2 cut(s)	343, 697
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	1036
EcoRII	CCWGG	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	999
EcoT14I	CCWWGG	2 cut(s)	106, 409
ErhI	CCWWGG	2 cut(s)	106, 409
Esp3I	CGTCTC	1 cut(s)	663
FaeI	CATG	2 cut(s)	173, 783
FatI	CATG	2 cut(s)	169, 779
FokI	GGATG	5 cut(s)	196, 311, 386, 529, 959
FspBI	CTAG	2 cut(s)	764, 968
GlaI	GCGC	2 cut(s)	40, 833
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	92, 603, 914
HgaI	GACGC	1 cut(s)	827
HhaI	GCGC	2 cut(s)	41, 834
Hin1II	CATG	2 cut(s)	173, 783
Hin6I	GCGC	2 cut(s)	39, 832
HinP1I	GCGC	2 cut(s)	39, 832
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	164, 709
Hpy188I	TCNGA	3 cut(s)	362, 942, 1003
Hpy188III	TCNNGA	2 cut(s)	76, 523
Hpy8I	GTNNAC	2 cut(s)	164, 709
HpyAV	CCTTC	2 cut(s)	413, 904
HpyCH4III	ACNGT	2 cut(s)	337, 430
HpyCH4IV	ACGT	3 cut(s)	636, 656, 719
HpyCH4V	TGCA	5 cut(s)	122, 320, 425, 891, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	451
HpyF3I	CTNAG	4 cut(s)	272, 343, 784, 939
HpySE526I	ACGT	3 cut(s)	636, 656, 719
Hsp92II	CATG	2 cut(s)	173, 783
HspAI	GCGC	2 cut(s)	39, 832
Kzo9I	GATC	7 cut(s)	72, 78, 211, 436, 519, 961, 1024
LmnI	GCTCC	1 cut(s)	987
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	764, 968
MaeII	ACGT	3 cut(s)	636, 656, 719
MaeIII	GTNAC	5 cut(s)	83, 151, 430, 595, 748
MalI	GATC	7 cut(s)	74, 80, 213, 438, 521, 963, 1026
MbiI	CCGCTC	1 cut(s)	990
MboI	GATC	7 cut(s)	72, 78, 211, 436, 519, 961, 1024
MboII	GAAGA	4 cut(s)	346, 349, 538, 664
MfeI	CAATTG	1 cut(s)	932
MflI	RGATCY	3 cut(s)	436, 961, 1024
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	5 cut(s)	286, 420, 504, 932, 1036
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	3 cut(s)	73, 701, 948
MseI	TTAA	5 cut(s)	242, 266, 285, 447, 623
MspA1I	CMGCKG	1 cut(s)	828
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	932
Mva1269I	GAATGC	1 cut(s)	821
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	451
NdeII	GATC	7 cut(s)	72, 78, 211, 436, 519, 961, 1024
NlaIII	CATG	2 cut(s)	173, 783
NlaIV	GGNNCC	1 cut(s)	1026
NmuCI	GTSAC	2 cut(s)	151, 748
NspI	RCATGY	1 cut(s)	783
PctI	GAATGC	1 cut(s)	821
Ple19I	CGATCG	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	1026
PspPI	GGNCC	2 cut(s)	91, 602
PsuI	RGATCY	3 cut(s)	436, 961, 1024
PvuI	CGATCG	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	828
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	5 cut(s)	242, 266, 285, 447, 623
Sau3AI	GATC	7 cut(s)	72, 78, 211, 436, 519, 961, 1024
Sau96I	GGNCC	2 cut(s)	91, 602
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
Sse9I	AATT	5 cut(s)	286, 420, 504, 932, 1036
SsiI	CCGC	3 cut(s)	965, 977, 990
SspMI	CTAG	2 cut(s)	764, 968
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	106, 409
TaaI	ACNGT	2 cut(s)	337, 430
TaiI	ACGT	3 cut(s)	639, 659, 722
TaqI	TCGA	3 cut(s)	71, 376, 897
TasI	AATT	5 cut(s)	286, 420, 504, 932, 1036
TatI	WGTACW	1 cut(s)	332
Tru1I	TTAA	5 cut(s)	242, 266, 285, 447, 623
Tru9I	TTAA	5 cut(s)	242, 266, 285, 447, 623
TseFI	GTSAC	2 cut(s)	151, 748
Tsp45I	GTSAC	2 cut(s)	151, 748
TspDTI	ATGAA	6 cut(s)	158, 200, 381, 531, 664, 963
TspGWI	ACGGA	1 cut(s)	43
XapI	RAATTY	1 cut(s)	1036
XceI	RCATGY	1 cut(s)	783
XspI	CTAG	2 cut(s)	764, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.