Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001213

Physical Location & Seq

Genomic Coordinates Forward (+)

3315213 .. 3316591

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04210.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAAATTTTTTGAACACAAACCTTTTGATGCTCGTTCTGTAATGGGATTTGGAATTCTTAATGGAATCTCTATTGGCCTTCTGAATCTTAGCTTGGGTTTCAATTCCGTTGGTTTTTACCAGATGACAAAACTGGCAATCATCCCCTGTACTGTTTTTCTGGAAACCCTTTTCTTTAAGAAGAAATTCAGTCGAAGTGTGCAGTTTTCACTCTCCATCCTTCTTTTGGGAGTTGGGGTTGCAACAGTGACGGATCTTCAGCTCAATGCTCTGGGTTCCTTTTTGTCCCTGCTGGCAGTTCTAACAACTTGTGTTGCTCAGATTATGACCAATACGATCCAGAAGAAGTTCAAAGTTTCATCAACCCAACTTCTGTACCAGTCTTGCCCCTATCAGGCAATAACGTTGTTTGTCATTGGTCCATTTCTAGATGGATTTTTAACTAATCAAAATGTTTTTGCTTTTGCTTATACCCCTCAAGTGCTGTTCTTCATTGTTCTGTCCTGCTTGATATCTGTCTCGGTAAACTTCAGTACATTTTTGGTTATTGGAAGGACGTCTGCAGTAACCTATCAGGTCCTTGGACATCTGAAAACATGCCTTGTTTTGGCATTTGGCTACATTCTAGTTCGATCGATCCATTTAGCTGGCGCAACATTTTGGGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005464 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015291 GO:0015297 GO:0015711 GO:0015780 GO:0015790 GO:0015931 GO:0015932 GO:0022804 GO:0022857 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0097708 GO:0098656 GO:0098791 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

224

Amino Acids

24.59

Weight (kDa)

9.51

Isoelectric Point (pI)

24.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06890 AT1G06890 AT1G06890 AT1G06890 AT2G30460 AT2G30460 AT2G30460 AT2G30460 AT2G30460
fragaria_vesca	FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_3g40350 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720 FvH4_7g25720
malus_domestica	MD01G1164500.v1.1 MD03G1052900.v1.1 MD07G1232100.v1.1 MD11G1054700.v1.1
prunus_persica	Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.2G262200_v2.0.a1 Prupe.6G042100_v2.0.a1
pyrus_communis	pycom01g17860 pycom03g04210 pycom11g04460
rosa_chinensis	RchiOBHm_Chr1g0371941 RchiOBHm_Chr5g0072751
rosa_laevigata	RLG00000026934 RLG00000036329
rosa_multiflora	Rmu_sc0001755.1_g000044 Rmu_sc0041892.1_g000001 Rmu_sc0042688.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008430 Rroxscaffold_4G00285360
rosa_rugosa	Rorug01G0367500 Rorug05G0419500 Rorug05G0419600
rosa_samantha	Rh1AG377200 Rh1BG340500 Rh1CG353600 Rh1DG371400 Rh5AG476800 Rh5BG496700 Rh5CG520600 Rh5DG509000
rosa_wichuraiana	Rw1G033190 Rw5G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	560
AclI	AACGTT	1 cut(s)	404
AclWI	GGATC	3 cut(s)	261, 331, 631
AcsI	RAATTY	3 cut(s)	5, 54, 185
AcuI	CTGAAG	2 cut(s)	242, 514
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	3 cut(s)	151, 377, 535
AfiI	CCNNNNNNNGG	3 cut(s)	226, 394, 607
AgsI	TTSAA	3 cut(s)	14, 103, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	3 cut(s)	93, 262, 647
AluI	AGCT	3 cut(s)	93, 262, 647
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	3 cut(s)	261, 331, 631
AoxI	GGCC	1 cut(s)	76
ApoI	RAATTY	3 cut(s)	5, 54, 185
Asp700I	GAANNNNTTC	2 cut(s)	185, 347
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	419, 577
AvaII	GGWCC	2 cut(s)	419, 577
BaeI	ACNNNNGTAYC	2 cut(s)	359, 392
BccI	CCATC	2 cut(s)	224, 425
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	2 cut(s)	428, 626
BfmI	CTRYAG	1 cut(s)	561
Bme18I	GGWCC	2 cut(s)	419, 577
BmgT120I	GGNCC	2 cut(s)	419, 577
BmiI	GGNNCC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	580
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 394, 607
Bse1I	ACTGG	2 cut(s)	138, 379
BseCI	ATCGAT	1 cut(s)	635
BseDI	CCNNGG	1 cut(s)	580
BseGI	GGATG	2 cut(s)	141, 216
BseLI	CCNNNNNNNGG	3 cut(s)	226, 394, 607
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	138, 379
BsgI	GTGCAG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	635
BshFI	GGCC	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	635
BsiEI	CGRYCG	1 cut(s)	635
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	226, 394, 607
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	78
Bsp143I	GATC	4 cut(s)	253, 336, 632, 636
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	635
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	3 cut(s)	261, 331, 631
BsrI	ACTGG	2 cut(s)	138, 379
BssECI	CCNNGG	1 cut(s)	580
BssMI	GATC	4 cut(s)	253, 336, 632, 636
BssNI	GRCGYC	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	580
Bst4CI	ACNGT	2 cut(s)	154, 247
BstACI	GRCGYC	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	294, 649
BstDEI	CTNAG	2 cut(s)	89, 318
BstF5I	GGATG	2 cut(s)	141, 216
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	4 cut(s)	256, 339, 635, 639
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	4 cut(s)	253, 336, 632, 636
BstMCI	CGRYCG	1 cut(s)	635
BstNSI	RCATGY	1 cut(s)	600
BstSFI	CTRYAG	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	635
BsuRI	GGCC	1 cut(s)	78
BsuTUI	ATCGAT	1 cut(s)	635
BtsCI	GGATG	2 cut(s)	141, 216
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	294, 649
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	2 cut(s)	419, 577
ClaI	ATCGAT	1 cut(s)	635
Csp6I	GTAC	3 cut(s)	150, 376, 534
CviAII	CATG	1 cut(s)	597
CviJI	RGCY	5 cut(s)	78, 93, 262, 618, 647
CviKI_1	RGCY	5 cut(s)	78, 93, 262, 618, 647
CviQI	GTAC	3 cut(s)	150, 376, 534
DdeI	CTNAG	2 cut(s)	89, 318
DpnI	GATC	4 cut(s)	255, 338, 634, 638
DpnII	GATC	4 cut(s)	253, 336, 632, 636
Eco130I	CCWWGG	1 cut(s)	580
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	419, 577
Eco57I	CTGAAG	2 cut(s)	242, 514
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	54
EcoRV	GATATC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	1 cut(s)	600
FaiI	YATR	3 cut(s)	326, 471, 598
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	1 cut(s)	596
FokI	GGATG	2 cut(s)	128, 203
FspBI	CTAG	2 cut(s)	428, 626
GlaI	GCGC	1 cut(s)	652
HaeIII	GGCC	1 cut(s)	78
HhaI	GCGC	1 cut(s)	653
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	1 cut(s)	600
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	2 cut(s)	66, 85
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	3 cut(s)	84, 321, 591
Hpy188III	TCNNGA	3 cut(s)	161, 340, 428
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	3 cut(s)	89, 230, 546
HpyCH4III	ACNGT	2 cut(s)	154, 247
HpyCH4IV	ACGT	2 cut(s)	404, 557
HpyCH4V	TGCA	3 cut(s)	202, 242, 563
HpyF3I	CTNAG	2 cut(s)	89, 318
HpySE526I	ACGT	2 cut(s)	404, 557
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	1 cut(s)	600
HspAI	GCGC	1 cut(s)	651
Kzo9I	GATC	4 cut(s)	253, 336, 632, 636
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	428, 626
MaeII	ACGT	2 cut(s)	404, 557
MaeIII	GTNAC	2 cut(s)	247, 565
MalI	GATC	4 cut(s)	255, 338, 634, 638
MboI	GATC	4 cut(s)	253, 336, 632, 636
MboII	GAAGA	4 cut(s)	193, 248, 355, 481
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	4 cut(s)	5, 54, 103, 185
MnlI	CCTC	1 cut(s)	486
MroXI	GAANNNNTTC	2 cut(s)	185, 347
MseI	TTAA	3 cut(s)	60, 177, 440
NdeII	GATC	4 cut(s)	253, 336, 632, 636
NlaIII	CATG	1 cut(s)	600
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	600
PdmI	GAANNNNTTC	2 cut(s)	185, 347
PfeI	GAWTC	2 cut(s)	66, 85
Ple19I	CGATCG	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	577
Psp1406I	AACGTT	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	419, 577
PspPPI	RGGWCCY	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	635
RsaI	GTAC	3 cut(s)	151, 377, 535
RsaNI	GTAC	3 cut(s)	150, 376, 534
SaqAI	TTAA	3 cut(s)	60, 177, 440
Sau3AI	GATC	4 cut(s)	253, 336, 632, 636
Sau96I	GGNCC	2 cut(s)	419, 577
SetI	ASST	8 cut(s)	25, 95, 264, 407, 560, 572, 579, 649
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	2 cut(s)	419, 577
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
Sse9I	AATT	4 cut(s)	5, 54, 103, 185
SspMI	CTAG	2 cut(s)	428, 626
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	2 cut(s)	154, 247
TaiI	ACGT	2 cut(s)	407, 560
TaqI	TCGA	3 cut(s)	193, 631, 635
TasI	AATT	4 cut(s)	5, 54, 103, 185
TatI	WGTACW	2 cut(s)	149, 533
TfiI	GAWTC	2 cut(s)	66, 85
Tru1I	TTAA	3 cut(s)	60, 177, 440
Tru9I	TTAA	3 cut(s)	60, 177, 440
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	17, 348, 481
TspGWI	ACGGA	2 cut(s)	97, 266
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	2 cut(s)	419, 577
XapI	RAATTY	3 cut(s)	5, 54, 185
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	1 cut(s)	600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmnI	GAANNNNTTC	2 cut(s)	185, 347
XspI	CTAG	2 cut(s)	428, 626
ZraI	GACGTC	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.