Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003359

Physical Location & Seq

Genomic Coordinates Forward (+)

3484399 .. 3486965

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2094 bp

ATGATCCATACGAAAACCGGGTCTGGTCGTCGGATCTTGACATTTCCGACTGTGGAACCATCCGAATCAATCTCCATAGTCACCCTATTGGACTCACTGATTCAACTCGCCGGCGACATTCTCACATTCAAGTCGAAACACTTCTCTACCAATAAACAAAGCTTCAGAGAAACTCTCAGGCGGATCCAAAACCTACTTGTTGTCTTCGAAGAGATTCGGATCCGGATCAGAAATTCGAGACGCTACTTCCATGACTCTGCCGCCGCGTCGAGCCTCAAGGAGATCCACGTCGGCTTCCAAAAGCTCAAGTTCCTTCTAGAAGACTGCACGAGAGACGGAGCTAGACTATGCATGATGATGAACTCGGATCAAGTCTCGGATCATCTCCGGGTCCTGACTCGATCCATTTCCACCAGTCTTAGTGCGTTTCCTGTCGCCTCCGTTGACTTAACGACCGAAGTCAACGAGCTAATTGATTTAGTGGTGCGGCAAGCTCGTAAGTACGGAGTCCAACCTGAAACAAATGATAAACGGGCCGTGAGCTCCATTAATAGGATCCTTGCTCTGTTTGTGAACAGAGTCGTCCCGGATCCGGATGAAATTAACAGGATCTTGGATCACGTAGGGATCAGAAAATGGGGAGATTGCGTTAAAGAGATAAACTTTCTCGGAGAAGAGATAGATGCAGAACGGTTAGATGAGAAGAAGAAGAAGAGTAGCGATCAAGTCGAGCTTCTCAGTAGTTTAATGGGATTCATATGTTATTGCAGATGCATTATACTTGGACGGATCGAGAGAGATGATCATCATAATCATCATGAAGATGGTATAAAGAAAGATCATGACTTGATCCGAGGATTGAAAGTTGAGGATCTCCTTTGTCCAATTTCACTAGAGATTATGACGGATCCTGTGGTTATAGAAACAGGCCACACTTATGATCGGAGCTCCATCACTAAATGGTTCGGATCCGGGAACATCACGTGCCCTATAACCGGAAAGATTCTGACTAGTACCGAGTTGGTTGATAACGTATCCGTGAGGCAAGTGATTCGAAAGCACTGCAAAACAAACGGCATCGTTTTGGCGGGGATTAGTCGGAGAAGAAAGAGTCACGATGACGTGGTCCCGGAGAGTTTGGCTGCAAAGGGAGCTGGGAAACTCATCGCAAAGTTTCTCACTTCAGAGTTAATCAATGGCGGTGAAGAGATGATTTACAGAGCCGTGAGAGAGATTCGTGTTCAGACCAAGACAAGCAGTTTTAATAGGTCTTGTCTGGTTAAAGCTGGTGCTGTGACTCCACTTTTAAAGCTTCTTAGCTCCGTAGATATCAGGATTCAAGAAAACGCAATGGCTGGGATCTTGAATCTTTCCAAGCACGTTACCGGAAAATCTAAGATTGCGGGAGAAGGGTTAAAGATACTTGTAGAGATTCTCAACGAAGGAGCTAAAACAGAGACGAGACTATACTCTGCTTCTGCTCTGTTTTATCTCTCTTCCGTTGAAGATTACAGCAGATTGATCGGAGAAAATCCAGATGCGATTCCGGGATTGATGAATATCGTTAAAGGAGATGATTACGGCGATTCCGCCAAACGTAGCGCGTTGCTTGCGGTTATGGGTTTGTTAATGCAATCCGATAACCATTGGCGTGTTCTCGCCGCCGGAGCTGTTCCGATTCTTCTTGATCTGTTGAGATCGGGGGAGATTAGCGGCGGACTCACGGCGGATTGTTTAGCGACGTTGGCGAAGCTGGCGGAGTATCCTGATGGGACGATTGGGGTGATTCGTCGTGGCGGTTTGAAACTCGCGGTGAAGATTTTGTCTTCGTCGGAGGATTCTCCGGTGGCGGTGAAGCAGCATTGTGTTGGTCTGATTTTGAACTTGTGTCTTAACGGAGGACGTGACGTCGTTGGGGTTCTGGTGAAGAATTCGTTGGTCATGGGGTCGCTTTACACGGTGTTAAGTAACGGCGAATATGGAGGAAGCAAGAAGGCTAGTGCGCTGATCAGAATGATCCATGAGTTCCAGGAGAGGAAAACCGGTTCGGTTGAACCGAATCTTCAAAGAGGACGGTTCGTTCACGCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

697

Amino Acids

76.99

Weight (kDa)

8.91

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	57 - 166	3.4e-09	PUB10-like, N-terminal domain
U-box	PF04564	291 - 358	1.8e-16	U-box domain
zf-RING_UBOX	PF13445	294 - 330	3e-07	RING-type zinc-finger
ARM_PUB	PF25598	408 - 608	1.4e-12	Plant U-box protein ARM repeat region
Arm	PF00514	422 - 458	1.8e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10560 AT1G60190
fragaria_vesca	FvH4_4g34620 FvH4_5g05140
malus_domestica	MD06G1177100.v1.1 MD13G1090900.v1.1 MD14G1183300.v1.1 MD16G1091300.v1.1
prunus_persica	Prupe.1G255000_v2.0.a1 Prupe.5G175800_v2.0.a1
pyrus_communis	pycom06g15720 pycom13g07890 pycom14g15220 pycom16g07800
rosa_chinensis	RchiOBHm_Chr4g0443981 RchiOBHm_Chr7g0193831
rosa_laevigata	RLG00000004242 RLG00000005870
rosa_multiflora	Rmu_co8252843.1_g000001 Rmu_sc0001436.1_g000032 Rmu_sc0027702.1_g000002 Rmu_sc0029481.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261790 Rroxscaffold_5G00384530
rosa_rugosa	Rorug04G0348700 Rorug07G0012400
rosa_samantha	Rh4AG409400 Rh4BG420500 Rh4CG434500 Rh4DG415500 Rh7AG139000 Rh7BG139200 Rh7CG142900 Rh7DG140500
rosa_wichuraiana	Rw4G035170 Rw7G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1911
AccII	CGCG	3 cut(s)	266, 1604, 1811
AccIII	TCCGGA	2 cut(s)	222, 592
AcsI	RAATTY	2 cut(s)	232, 1930
AcuI	CTGAAG	2 cut(s)	148, 1167
AcvI	CACGTG	1 cut(s)	984
AcyI	GRCGYC	1 cut(s)	1908
AfaI	GTAC	2 cut(s)	503, 1015
AfiI	CCNNNNNNNGG	3 cut(s)	552, 592, 995
AgeI	ACCGGT	1 cut(s)	2042
AhdI	GACNNNNNGTC	1 cut(s)	1907
AhlI	ACTAGT	1 cut(s)	1010
AjiI	CACGTC	3 cut(s)	289, 1123, 1904
AjnI	CCWGG	2 cut(s)	2028, 2087
AjuI	GAANNNNNNNTTGG	2 cut(s)	1919, 1951
AloI	GAACNNNNNNTCC	3 cut(s)	2029, 2061, 2064
Alw21I	GWGCWC	2 cut(s)	545, 950
Alw26I	GTCTC	5 cut(s)	232, 327, 379, 1451, 1456
Aor13HI	TCCGGA	2 cut(s)	222, 592
AoxI	GGCC	2 cut(s)	534, 928
ApeKI	GCWGC	2 cut(s)	1142, 1858
ApoI	RAATTY	2 cut(s)	232, 1930
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AseI	ATTAAT	1 cut(s)	549
AsiGI	ACCGGT	1 cut(s)	2042
Asp700I	GAANNNNTTC	2 cut(s)	140, 213
AspLEI	GCGC	2 cut(s)	1604, 2005
AspS9I	GGNCC	3 cut(s)	391, 534, 1126
AsuC2I	CCSGG	6 cut(s)	19, 389, 587, 973, 1130, 1548
AsuHPI	GGTGA	6 cut(s)	73, 1214, 1795, 1825, 1864, 1936
AsuII	TTCGAA	2 cut(s)	207, 1054
AvaII	GGWCC	2 cut(s)	391, 1126
BaeGI	GKGCMC	1 cut(s)	989
BamHI	GGATCC	6 cut(s)	183, 219, 555, 589, 907, 968
BanII	GRGCYC	2 cut(s)	545, 950
BauI	CACGAG	1 cut(s)	328
BbrPI	CACGTG	1 cut(s)	984
BbsI	GAAGAC	3 cut(s)	196, 327, 1818
Bbv12I	GWGCWC	2 cut(s)	545, 950
BbvI	GCAGC	2 cut(s)	1129, 1870
BccI	CCATC	4 cut(s)	67, 818, 959, 1763
BceAI	ACGGC	6 cut(s)	521, 1090, 1208, 1597, 1740, 1987
BcgI	CGANNNNNNTGC	6 cut(s)	1034, 1044, 1068, 1078, 1504, 1538
BciT130I	CCWGG	2 cut(s)	2030, 2089
BciVI	GTATCC	2 cut(s)	1045, 1773
BclI	TGATCA	2 cut(s)	802, 2007
BcnI	CCSGG	6 cut(s)	19, 389, 587, 973, 1130, 1548
BcoDI	GTCTC	5 cut(s)	232, 327, 379, 1451, 1456
BcuI	ACTAGT	1 cut(s)	1010
BfaI	CTAG	5 cut(s)	317, 342, 893, 1011, 1998
BfuI	GTATCC	2 cut(s)	1045, 1773
BisI	GCNGC	7 cut(s)	261, 264, 488, 1143, 1662, 1714, 1859
BlsI	GCNGC	7 cut(s)	262, 265, 489, 1144, 1663, 1715, 1860
Bme1390I	CCNGG	8 cut(s)	19, 389, 587, 973, 1130, 1548, 2030, 2089
Bme18I	GGWCC	2 cut(s)	391, 1126
BmeRI	GACNNNNNGTC	1 cut(s)	1907
BmgBI	CACGTC	3 cut(s)	289, 1123, 1904
BmgT120I	GGNCC	3 cut(s)	391, 534, 1126
BmiI	GGNNCC	9 cut(s)	57, 185, 221, 392, 557, 591, 909, 970, 1128
BmrFI	CCNGG	8 cut(s)	19, 389, 587, 973, 1130, 1548, 2030, 2089
BmsI	GCATC	4 cut(s)	673, 761, 1086, 1528
BoxI	GACNNNNGTC	1 cut(s)	458
BpiI	GAAGAC	3 cut(s)	196, 327, 1818
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu14I	TTCGAA	2 cut(s)	207, 1054
BpuEI	CTTGAG	2 cut(s)	260, 290
BpuMI	CCSGG	6 cut(s)	19, 389, 587, 973, 1130, 1548
BsaAI	YACGTR	2 cut(s)	622, 984
BsaBI	GATNNNNATC	4 cut(s)	218, 224, 804, 1559
BsaHI	GRCGYC	1 cut(s)	1908
BsaJI	CCNNGG	1 cut(s)	853
BsaWI	WCCGGW	6 cut(s)	222, 592, 995, 1385, 1843, 2042
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	3 cut(s)	552, 592, 995
Bse118I	RCCGGY	2 cut(s)	110, 2042
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	1356
Bse8I	GATNNNNATC	4 cut(s)	218, 224, 804, 1559
BseAI	TCCGGA	2 cut(s)	222, 592
BseBI	CCWGG	2 cut(s)	2030, 2089
BseDI	CCNNGG	1 cut(s)	853
BseGI	GGATG	2 cut(s)	59, 601
BseJI	GATNNNNATC	4 cut(s)	218, 224, 804, 1559
BseLI	CCNNNNNNNGG	3 cut(s)	552, 592, 995
BseMI	GCAATG	1 cut(s)	1356
BseMII	CTCAG	2 cut(s)	190, 751
BseNI	ACTGG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	989
BseXI	GCAGC	2 cut(s)	1129, 1870
BseYI	CCCAGC	2 cut(s)	1154, 1355
BsgI	GTGCAG	1 cut(s)	310
Bsh1236I	CGCG	3 cut(s)	266, 1604, 1811
Bsh1285I	CGRYCG	1 cut(s)	456
BshFI	GGCC	2 cut(s)	536, 930
BshTI	ACCGGT	1 cut(s)	2042
BsiEI	CGRYCG	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	545, 950
BslFI	GGGAC	3 cut(s)	569, 1112, 1786
BslI	CCNNNNNNNGG	3 cut(s)	552, 592, 995
BsmAI	GTCTC	5 cut(s)	232, 327, 379, 1451, 1456
BsmBI	CGTCTC	3 cut(s)	232, 327, 1451
BsmFI	GGGAC	3 cut(s)	569, 1112, 1786
BsnI	GGCC	2 cut(s)	536, 930
Bsp119I	TTCGAA	2 cut(s)	207, 1054
Bsp1286I	GDGCHC	3 cut(s)	545, 950, 989
Bsp13I	TCCGGA	2 cut(s)	222, 592
BspANI	GGCC	2 cut(s)	536, 930
BspCNI	CTCAG	2 cut(s)	189, 750
BspEI	TCCGGA	2 cut(s)	222, 592
BspFNI	CGCG	3 cut(s)	266, 1604, 1811
BspHI	TCATGA	2 cut(s)	817, 841
BspLI	GGNNCC	9 cut(s)	57, 185, 221, 392, 557, 591, 909, 970, 1128
BspT104I	TTCGAA	2 cut(s)	207, 1054
BsrDI	GCAATG	1 cut(s)	1356
BsrFI	RCCGGY	2 cut(s)	110, 2042
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	2 cut(s)	110, 2042
BssECI	CCNNGG	1 cut(s)	853
BssNI	GRCGYC	1 cut(s)	1908
BssSI	CACGAG	1 cut(s)	328
Bst2BI	CACGAG	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	2030, 2089
Bst4CI	ACNGT	4 cut(s)	52, 693, 1960, 2076
Bst6I	CTCTTC	5 cut(s)	204, 669, 707, 1200, 1501
BstACI	GRCGYC	1 cut(s)	1908
BstBAI	YACGTR	2 cut(s)	622, 984
BstBI	TTCGAA	2 cut(s)	207, 1054
BstC8I	GCNNGC	4 cut(s)	112, 492, 1611, 1755
BstDEI	CTNAG	5 cut(s)	176, 419, 737, 1316, 1395
BstF5I	GGATG	2 cut(s)	59, 601
BstFNI	CGCG	3 cut(s)	266, 1604, 1811
BstHHI	GCGC	2 cut(s)	1604, 2005
BstMAI	GTCTC	5 cut(s)	232, 327, 379, 1451, 1456
BstMCI	CGRYCG	1 cut(s)	456
BstMWI	GCNNNNNNNGC	5 cut(s)	1151, 1610, 1667, 1745, 1754
BstNI	CCWGG	2 cut(s)	2030, 2089
BstPAI	GACNNNNGTC	1 cut(s)	458
BstSCI	CCNGG	8 cut(s)	17, 387, 585, 971, 1128, 1546, 2028, 2087
BstSLI	GKGCMC	1 cut(s)	989
BstUI	CGCG	3 cut(s)	266, 1604, 1811
BstV1I	GCAGC	2 cut(s)	1129, 1870
BstV2I	GAAGAC	3 cut(s)	196, 327, 1818
BsuI	GTATCC	2 cut(s)	1045, 1773
BsuRI	GGCC	2 cut(s)	536, 930
BtgZI	GCGATG	1 cut(s)	1150
BtrI	CACGTC	3 cut(s)	289, 1123, 1904
BtsCI	GGATG	2 cut(s)	59, 601
BtsI	GCAGTG	1 cut(s)	1060
BtsIMutI	CAGTG	2 cut(s)	95, 1060
Cac8I	GCNNGC	4 cut(s)	112, 492, 1611, 1755
CciI	TCATGA	2 cut(s)	817, 841
CfoI	GCGC	2 cut(s)	1604, 2005
Cfr10I	RCCGGY	2 cut(s)	110, 2042
Cfr13I	GGNCC	3 cut(s)	391, 534, 1126
CseI	GACGC	2 cut(s)	249, 255
Csp6I	GTAC	2 cut(s)	502, 1014
CspAI	ACCGGT	1 cut(s)	2042
CviAII	CATG	6 cut(s)	251, 352, 818, 842, 1942, 2021
CviQI	GTAC	2 cut(s)	502, 1014
DdeI	CTNAG	5 cut(s)	176, 419, 737, 1316, 1395
DraI	TTTAAA	1 cut(s)	1308
DriI	GACNNNNNGTC	1 cut(s)	1907
Eam1104I	CTCTTC	5 cut(s)	204, 669, 707, 1200, 1501
Eam1105I	GACNNNNNGTC	1 cut(s)	1907
EarI	CTCTTC	5 cut(s)	204, 669, 707, 1200, 1501
EciI	GGCGGA	5 cut(s)	196, 1579, 1731, 1742, 1772
Ecl136II	GAGCTC	2 cut(s)	543, 948
Eco24I	GRGCYC	2 cut(s)	545, 950
Eco32I	GATATC	1 cut(s)	1330
Eco47I	GGWCC	2 cut(s)	391, 1126
Eco53kI	GAGCTC	2 cut(s)	543, 948
Eco57I	CTGAAG	2 cut(s)	148, 1167
Eco72I	CACGTG	1 cut(s)	984
EcoICRI	GAGCTC	2 cut(s)	543, 948
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	1930
EcoRII	CCWGG	2 cut(s)	2028, 2087
EcoRV	GATATC	1 cut(s)	1330
EcoT22I	ATGCAT	2 cut(s)	353, 776
EcoT38I	GRGCYC	2 cut(s)	545, 950
Esp3I	CGTCTC	3 cut(s)	232, 327, 1451
FaeI	CATG	6 cut(s)	254, 355, 821, 845, 1945, 2024
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	3 cut(s)	569, 1112, 1786
FatI	CATG	6 cut(s)	250, 351, 817, 841, 1941, 2020
FauI	CCCGC	2 cut(s)	1081, 1396
FauNDI	CATATG	1 cut(s)	758
FbaI	TGATCA	2 cut(s)	802, 2007
Fnu4HI	GCNGC	7 cut(s)	261, 264, 488, 1143, 1662, 1714, 1859
FokI	GGATG	2 cut(s)	46, 608
FriOI	GRGCYC	2 cut(s)	545, 950
Fsp4HI	GCNGC	7 cut(s)	261, 264, 488, 1143, 1662, 1714, 1859
FspBI	CTAG	5 cut(s)	317, 342, 893, 1011, 1998
GlaI	GCGC	2 cut(s)	1603, 2004
GluI	GCNGC	7 cut(s)	261, 264, 488, 1143, 1662, 1714, 1859
GsaI	CCCAGC	2 cut(s)	1158, 1359
HaeIII	GGCC	2 cut(s)	536, 930
HgaI	GACGC	2 cut(s)	249, 255
HhaI	GCGC	2 cut(s)	1604, 2005
Hin1I	GRCGYC	1 cut(s)	1908
Hin1II	CATG	6 cut(s)	254, 355, 821, 845, 1945, 2024
Hin6I	GCGC	2 cut(s)	1602, 2003
HinP1I	GCGC	2 cut(s)	1602, 2003
HincII	GTYRAC	2 cut(s)	445, 463
HindII	GTYRAC	2 cut(s)	445, 463
HindIII	AAGCTT	2 cut(s)	160, 1310
HphI	GGTGA	6 cut(s)	73, 1214, 1795, 1825, 1864, 1936
Hpy166II	GTNNAC	4 cut(s)	445, 463, 574, 2083
Hpy8I	GTNNAC	4 cut(s)	445, 463, 574, 2083
Hpy99I	CGWCG	7 cut(s)	33, 271, 293, 1744, 1794, 1834, 1913
HpyAV	CCTTC	4 cut(s)	323, 1403, 1436, 1987
HpyCH4III	ACNGT	4 cut(s)	52, 693, 1960, 2076
HpyCH4V	TGCA	8 cut(s)	327, 351, 686, 768, 774, 1065, 1145, 1633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1151, 1610, 1667, 1745, 1754
HpyF3I	CTNAG	5 cut(s)	176, 419, 737, 1316, 1395
Hsp92I	GRCGYC	1 cut(s)	1908
Hsp92II	CATG	6 cut(s)	254, 355, 821, 845, 1945, 2024
HspAI	GCGC	2 cut(s)	1602, 2003
Kpn2I	TCCGGA	2 cut(s)	222, 592
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Ksp22I	TGATCA	2 cut(s)	802, 2007
LmnI	GCTCC	8 cut(s)	338, 548, 945, 953, 1151, 1325, 1445, 1667
Lsp1109I	GCAGC	2 cut(s)	1129, 1870
LweI	GCATC	4 cut(s)	673, 761, 1086, 1528
MaeI	CTAG	5 cut(s)	317, 342, 893, 1011, 1998
MaeIII	GTNAC	6 cut(s)	79, 1112, 1294, 1381, 1904, 1967
MhlI	GDGCHC	3 cut(s)	545, 950, 989
MluCI	AATT	5 cut(s)	232, 471, 600, 885, 1930
MlyI	GAGTC	8 cut(s)	86, 248, 391, 516, 588, 1120, 1291, 1713
MmeI	TCCRAC	5 cut(s)	11, 71, 535, 1079, 1812
Mph1103I	ATGCAT	2 cut(s)	353, 776
MreI	CGCCGGCG	1 cut(s)	110
MroI	TCCGGA	2 cut(s)	222, 592
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	2 cut(s)	140, 213
MslI	CAYNNNNRTG	4 cut(s)	356, 822, 936, 1650
MspR9I	CCNGG	8 cut(s)	19, 389, 587, 973, 1130, 1548, 2030, 2089
MvaI	CCWGG	2 cut(s)	2030, 2089
MvnI	CGCG	3 cut(s)	266, 1604, 1811
MwoI	GCNNNNNNNGC	5 cut(s)	1151, 1610, 1667, 1745, 1754
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	6 cut(s)	19, 389, 587, 973, 1130, 1548
NdeI	CATATG	1 cut(s)	758
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	6 cut(s)	254, 355, 821, 845, 1945, 2024
NlaIV	GGNNCC	9 cut(s)	57, 185, 221, 392, 557, 591, 909, 970, 1128
NmuCI	GTSAC	4 cut(s)	79, 1112, 1294, 1904
NsiI	ATGCAT	2 cut(s)	353, 776
NspV	TTCGAA	2 cut(s)	207, 1054
PagI	TCATGA	2 cut(s)	817, 841
PcsI	WCGNNNNNNNCGW	1 cut(s)	2054
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	140, 213
PflFI	GACNNNGTC	1 cut(s)	1124
PfoI	TCCNGGA	5 cut(s)	585, 971, 1128, 1546, 2028
PinAI	ACCGGT	1 cut(s)	2042
PkrI	GCNGC	7 cut(s)	262, 265, 489, 1144, 1663, 1715, 1860
PleI	GAGTC	8 cut(s)	86, 248, 391, 515, 587, 1119, 1291, 1713
PmaCI	CACGTG	1 cut(s)	984
PmlI	CACGTG	1 cut(s)	984
PpsI	GAGTC	8 cut(s)	86, 248, 391, 515, 587, 1119, 1291, 1713
Ppu21I	YACGTR	2 cut(s)	622, 984
PpuMI	RGGWCCY	1 cut(s)	391
PshAI	GACNNNNGTC	1 cut(s)	458
PshBI	ATTAAT	1 cut(s)	549
Psp124BI	GAGCTC	2 cut(s)	545, 950
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	2028, 2087
PspCI	CACGTG	1 cut(s)	984
PspFI	CCCAGC	2 cut(s)	1154, 1355
PspGI	CCWGG	2 cut(s)	2028, 2087
PspN4I	GGNNCC	9 cut(s)	57, 185, 221, 392, 557, 591, 909, 970, 1128
PspPI	GGNCC	3 cut(s)	391, 534, 1126
PspPPI	RGGWCCY	1 cut(s)	391
PsyI	GACNNNGTC	1 cut(s)	1124
RsaI	GTAC	2 cut(s)	503, 1015
RsaNI	GTAC	2 cut(s)	502, 1014
RseI	CAYNNNNRTG	4 cut(s)	356, 822, 936, 1650
SacI	GAGCTC	2 cut(s)	545, 950
SatI	GCNGC	7 cut(s)	261, 264, 488, 1143, 1662, 1714, 1859
Sau96I	GGNCC	3 cut(s)	391, 534, 1126
SchI	GAGTC	8 cut(s)	86, 248, 391, 516, 588, 1120, 1291, 1713
ScrFI	CCNGG	8 cut(s)	19, 389, 587, 973, 1130, 1548, 2030, 2089
SduI	GDGCHC	3 cut(s)	545, 950, 989
SfaNI	GCATC	4 cut(s)	673, 761, 1086, 1528
SfuI	TTCGAA	2 cut(s)	207, 1054
SgrAI	CRCCGGYG	1 cut(s)	110
SinI	GGWCC	2 cut(s)	391, 1126
SmiMI	CAYNNNNRTG	4 cut(s)	356, 822, 936, 1650
SmlI	CTYRAG	2 cut(s)	275, 305
SmoI	CTYRAG	2 cut(s)	275, 305
SpeI	ACTAGT	1 cut(s)	1010
Sse9I	AATT	5 cut(s)	232, 471, 600, 885, 1930
SspMI	CTAG	5 cut(s)	317, 342, 893, 1011, 1998
SstI	GAGCTC	2 cut(s)	545, 950
StyD4I	CCNGG	8 cut(s)	17, 387, 585, 971, 1128, 1546, 2028, 2087
TaaI	ACNGT	4 cut(s)	52, 693, 1960, 2076
TaqI	TCGA	8 cut(s)	134, 207, 236, 269, 400, 729, 792, 1054
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	5 cut(s)	232, 471, 600, 885, 1930
TauI	GCSGC	5 cut(s)	263, 266, 490, 1664, 1716
TscAI	CASTG	2 cut(s)	102, 1067
TseFI	GTSAC	4 cut(s)	79, 1112, 1294, 1904
TseI	GCWGC	2 cut(s)	1142, 1858
Tsp45I	GTSAC	4 cut(s)	79, 1112, 1294, 1904
TspDTI	ATGAA	5 cut(s)	374, 612, 745, 834, 1571
TspGWI	ACGGA	9 cut(s)	351, 430, 519, 802, 920, 1027, 1312, 1489, 1911
TspRI	CASTG	2 cut(s)	102, 1067
Tth111I	GACNNNGTC	1 cut(s)	1124
VpaK11BI	GGWCC	2 cut(s)	391, 1126
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	2 cut(s)	232, 1930
XbaI	TCTAGA	1 cut(s)	316
XmnI	GAANNNNTTC	2 cut(s)	140, 213
XspI	CTAG	5 cut(s)	317, 342, 893, 1011, 1998
ZraI	GACGTC	1 cut(s)	1909
Zsp2I	ATGCAT	2 cut(s)	353, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.