Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003359

Physical Location & Seq

Genomic Coordinates Forward (+)

6340752 .. 6342812

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1091300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGATTCAGAGATCAAACGGGTCAGGTCGCCGGATTCTGACGTACCCGGCGGTTCATCCGTGCGAAGCCATATCTCCGCAGACACTCCTGGCGTCACTCATCACTCTCACCTGCAACATTTGCTCTTTCAAGTCGAAAGTCTTCGCCAGCAACGCCCGAAACGCCCGAGAAATCATCCGACAAATTGGTGTCGTCCGGGTTTTTCTCGAAGCGGTTAGAGATGAATCGTCGGGTCTTCCGGCCTCCGCAGTTCTGACCTTGTCGGAGCTCCACTTGGCCTTCCAGAAAGTTCAGTTCTTGCTGGAAGACTTGGCCCGGGATGACGCCAGGGTATGGATGCTGATGAAGTCGGGTTGCGTGGCGAGTCAGTTTAGGGTCTTGAGTCGGGCCATGGGCACGGCTCTCGATGTTCTGCCTCTCGCGTCGGTCGACGCCTCCGTTGAGGTCAAGGAGCACGTGGAATTGGTGGCCAGGCAAGCGCGAAAGACGGGGTATGAAGTCGACCCGGATGATATTCGTGTCGTGGAGGCGGTGAGGTCCGTTTTGGCCGGGTTAGAGAAAGGAGTTGCTCCGGGCAAGGGGGATCTGAAATGGGTTCTCGAGTTCCTCGGGATTAGGAAATGGAGCAGGTGTGAGAAGCAAGTCAAGTTCTTGGATTCGGAAATTGGGTTCGAGAATTTGAGCCAGGAGAAGAGAGATGTGGGGTTGTTGAGCAGCCTGAAGGGTTTGCTTTGCTATTGTCGATGTGTGTTGTTTGATGTTGTGGATGGTGAACCGGGTCGAAGACCCGAGACCAAATGCAGCGGCGCCGGCGTGGCGGTGGATTGCCTCAATTCAGAAGATTTCCGTTGCCCGATATCGCTGGAAATCATGGTTGATCCGGTCACGATAGCAACAGGGCAGAGCTACGATCGGTCTTCGATTGAGAAATGGTTCAGAGCTGGCAATCCCATTTGTCCCAAGACGGGGGAGAAGCTCAAGAACACGGAGGTGGTGCCGAATTTGGCGCTAAAGCGATTGATCCAGCAGCATTGTTACGAAAATGGTGTTGCATTTACTGATTCGGGTCACCGAAATCGCGACAGCGGGAGGACTAGGCTTGCAGTTGCTGGGAGTTTGGCAGCTGAGGGAGCCATGAAAATGGTGGCCGAGTTTCTTAATGGATGGCTTGAGTTTGGGACAGTAGAAGAGCAGAACAAGGCTGCTTATGAAATCCGGCTTCTTTCGAAATCAAGCATTTTTAACAGGTCTTGTTTGGTTGAAGCCGATGTGATTCCACATTTGTTGAAACTGTTATGTTCAGCAGATTCAGGGATTCAAGAAAATGCCATCGCCTCCTTGTTGAATCTTTCGAAGTATTTGAAAAGCAAGGCTGTGATTGTCGAAAATCGTGGTCTGGATTTGATTGTAGGTGTGGTGAAGAAAGGTCTCAGATTAGAGGCTCGTCAGCATGCTGCTGGCACATTGTTTTACCTCTCTTCGGTCGAGGAGTACAGGAGATTGATTGGAGAAAATGCAGATGCCATACCGGCATTGATGGAGTTGATCAAGGATGGAACTGATAGGGCCAAGAAAAACGCATTGGTTGCGATTTTCGGGCTCATTAATCACCCGGCAAATCATAGGAGGGTGATAGTAGCAGGGGTAGTTCCTCTGCTTGTTAATGTCTTAACATCATTTGATAGTGAAGCTCTCGTCACAGATGCTCTGGCAATTCTTTCAACTCTCGCAGAGAAACCTGATGGATCCGTTGCAATTTCGCATTGCAAAGCTTTGGATACGATTGTAGGGATCCTGAATTCCTCCATTCCTAGGGCAGGGAAGGAGTTCTGCGTGTCTTTGTTGCTTGCTCTTTGCGTAAATGGCAGTGGAGATGTGGTTGCTCTTCTAGTGAAGAGCCCTTCGCTTATGGGACCTTTGTATTCTCAACTCAGCGAAGGCACGTCTCGAGCAAGCAAAAAGGCCAGTGCTCTCATCAGGGTCCTGCATGAGTTCCATGAAAGAAGGTCATCCGGCTCAATGTCTCCGGTTCCACAAGAGCGATTCATTCACGTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

687

Amino Acids

74.78

Weight (kDa)

8.61

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	57 - 161	3.2e-09	PUB10-like, N-terminal domain
U-box	PF04564	280 - 347	3.5e-17	U-box domain
ARM_ARMC5	PF24768	372 - 525	5e-07	ARMC5
ARM_PUB	PF25598	397 - 619	7.7e-14	Plant U-box protein ARM repeat region
Arm	PF00514	415 - 451	3.1e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10560 AT1G60190
fragaria_vesca	FvH4_4g34620 FvH4_5g05140
malus_domestica	MD06G1177100.v1.1 MD13G1090900.v1.1 MD14G1183300.v1.1 MD16G1091300.v1.1
prunus_persica	Prupe.1G255000_v2.0.a1 Prupe.5G175800_v2.0.a1
pyrus_communis	pycom06g15720 pycom13g07890 pycom14g15220 pycom16g07800
rosa_chinensis	RchiOBHm_Chr4g0443981 RchiOBHm_Chr7g0193831
rosa_laevigata	RLG00000004242 RLG00000005870
rosa_multiflora	Rmu_co8252843.1_g000001 Rmu_sc0001436.1_g000032 Rmu_sc0027702.1_g000002 Rmu_sc0029481.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261790 Rroxscaffold_5G00384530
rosa_rugosa	Rorug04G0348700 Rorug07G0012400
rosa_samantha	Rh4AG409400 Rh4BG420500 Rh4CG434500 Rh4DG415500 Rh7AG139000 Rh7BG139200 Rh7CG142900 Rh7DG140500
rosa_wichuraiana	Rw4G035170 Rw7G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	119, 618
Acc36I	ACCTGC	2 cut(s)	119, 618
AccB1I	GGYRCC	2 cut(s)	806, 994
AccB7I	CCANNNNNTGG	1 cut(s)	333
AccI	GTMKAC	2 cut(s)	429, 501
AccII	CGCG	3 cut(s)	422, 481, 1080
AciI	CCGC	8 cut(s)	50, 77, 212, 246, 530, 804, 818, 1086
AclWI	GGATC	7 cut(s)	591, 872, 1015, 1740, 1753, 1786, 1799
AcoI	YGGCCR	3 cut(s)	468, 546, 1146
AcsI	RAATTY	3 cut(s)	676, 1000, 1798
AcuI	CTGAAG	1 cut(s)	740
AcvI	CACGTG	1 cut(s)	457
AcyI	GRCGYC	4 cut(s)	92, 324, 432, 807
AfaI	GTAC	2 cut(s)	44, 1493
AfiI	CCNNNNNNNGG	7 cut(s)	333, 578, 965, 966, 1480, 1812, 1817
AgsI	TTSAA	7 cut(s)	130, 1262, 1288, 1319, 1345, 1363, 1722
AjiI	CACGTC	1 cut(s)	1944
AjnI	CCWGG	4 cut(s)	87, 326, 470, 684
AjuI	GAANNNNNNNTTGG	2 cut(s)	1565, 1597
AleI	CACNNNNGTG	1 cut(s)	989
AloI	GAACNNNNNNTCC	2 cut(s)	653, 685
AluBI	AGCT	7 cut(s)	268, 906, 941, 976, 1124, 1691, 1772
AluI	AGCT	7 cut(s)	268, 906, 941, 976, 1124, 1691, 1772
Alw21I	GWGCWC	3 cut(s)	270, 456, 1972
Alw26I	GTCTC	4 cut(s)	785, 1433, 1950, 2028
AlwI	GGATC	7 cut(s)	591, 872, 1015, 1740, 1753, 1786, 1799
AlwNI	CAGNNNCTG	1 cut(s)	1109
Ama87I	CYCGRG	6 cut(s)	165, 315, 599, 608, 788, 1947
AoxI	GGCC	9 cut(s)	240, 276, 312, 387, 468, 546, 1146, 1566, 1962
ApeKI	GCWGC	6 cut(s)	714, 801, 1027, 1121, 1202, 1454
ApoI	RAATTY	3 cut(s)	676, 1000, 1798
AseI	ATTAAT	1 cut(s)	1605
Asp700I	GAANNNNTTC	3 cut(s)	140, 932, 1826
AspA2I	CCTAGG	1 cut(s)	1811
AspLEI	GCGC	3 cut(s)	481, 809, 1009
AspS9I	GGNCC	6 cut(s)	313, 387, 537, 1566, 1913, 1981
AsuC2I	CCSGG	9 cut(s)	47, 197, 316, 317, 506, 550, 573, 777, 1613
AsuHPI	GGTGA	7 cut(s)	100, 544, 782, 1061, 1429, 1601, 1642
AsuII	TTCGAA	2 cut(s)	1226, 1352
AvaI	CYCGRG	6 cut(s)	165, 315, 599, 608, 788, 1947
AvaII	GGWCC	3 cut(s)	537, 1913, 1981
AvrII	CCTAGG	1 cut(s)	1811
BaeGI	GKGCMC	1 cut(s)	398
BaeI	ACNNNNGTAYC	2 cut(s)	1770, 1803
BalI	TGGCCA	1 cut(s)	470
BamHI	GGATCC	2 cut(s)	1745, 1791
BanI	GGYRCC	2 cut(s)	806, 994
BanII	GRGCYC	3 cut(s)	270, 1602, 1901
BbrPI	CACGTG	1 cut(s)	457
BbsI	GAAGAC	5 cut(s)	133, 227, 312, 790, 909
Bbv12I	GWGCWC	3 cut(s)	270, 456, 1972
BbvCI	CCTCAGC	1 cut(s)	1125
BbvI	GCAGC	6 cut(s)	726, 813, 1039, 1133, 1189, 1441
BccI	CCATC	6 cut(s)	761, 1158, 1337, 1531, 1547, 1736
BceAI	ACGGC	1 cut(s)	414
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BciT130I	CCWGG	4 cut(s)	89, 328, 472, 686
BciVI	GTATCC	1 cut(s)	1771
BclI	TGATCA	1 cut(s)	1545
BcnI	CCSGG	9 cut(s)	47, 197, 316, 317, 506, 550, 573, 777, 1613
BcoDI	GTCTC	4 cut(s)	785, 1433, 1950, 2028
BfaI	CTAG	3 cut(s)	1095, 1812, 1889
BfoI	RGCGCY	2 cut(s)	810, 1010
BfuAI	ACCTGC	2 cut(s)	119, 618
BfuI	GTATCC	1 cut(s)	1771
BglI	GCCNNNNNGGC	2 cut(s)	815, 1529
BisI	GCNGC	7 cut(s)	715, 802, 805, 1028, 1122, 1203, 1455
BlnI	CCTAGG	1 cut(s)	1811
BlsI	GCNGC	7 cut(s)	716, 803, 806, 1029, 1123, 1204, 1456
Bme18I	GGWCC	3 cut(s)	537, 1913, 1981
BmeT110I	CYCGRG	6 cut(s)	165, 315, 599, 608, 788, 1947
BmgBI	CACGTC	1 cut(s)	1944
BmgT120I	GGNCC	6 cut(s)	313, 387, 537, 1566, 1913, 1981
BmiI	GGNNCC	8 cut(s)	808, 996, 1132, 1747, 1793, 1914, 1982, 2031
BmsI	GCATC	3 cut(s)	327, 1510, 1693
BpiI	GAAGAC	5 cut(s)	133, 227, 312, 790, 909
Bpu10I	CCTNAGC	1 cut(s)	1125
Bpu14I	TTCGAA	2 cut(s)	1226, 1352
BpuEI	CTTGAG	3 cut(s)	400, 962, 1190
BpuMI	CCSGG	9 cut(s)	47, 197, 316, 317, 506, 550, 573, 777, 1613
BsaAI	YACGTR	1 cut(s)	457
BsaHI	GRCGYC	4 cut(s)	92, 324, 432, 807
BsaI	GGTCTC	2 cut(s)	785, 1433
BsaJI	CCNNGG	5 cut(s)	315, 327, 390, 607, 1811
BsaWI	WCCGGW	2 cut(s)	880, 2026
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 1863, 1893
Bsc4I	CCNNNNNNNGG	7 cut(s)	333, 578, 965, 966, 1480, 1812, 1817
Bse118I	RCCGGY	2 cut(s)	809, 1528
Bse1I	ACTGG	1 cut(s)	1965
Bse3DI	GCAATG	1 cut(s)	1762
BseBI	CCWGG	4 cut(s)	89, 328, 472, 686
BseDI	CCNNGG	5 cut(s)	315, 327, 390, 607, 1811
BseGI	GGATG	9 cut(s)	55, 174, 325, 342, 514, 772, 1169, 1558, 2009
BseLI	CCNNNNNNNGG	7 cut(s)	333, 578, 965, 966, 1480, 1812, 1817
BseMI	GCAATG	1 cut(s)	1762
BseMII	CTCAG	3 cut(s)	1116, 1444, 1945
BseNI	ACTGG	1 cut(s)	1965
BseRI	GAGGAG	1 cut(s)	1502
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	6 cut(s)	726, 813, 1039, 1133, 1189, 1441
BseYI	CCCAGC	1 cut(s)	1109
Bsh1236I	CGCG	3 cut(s)	422, 481, 1080
Bsh1285I	CGRYCG	3 cut(s)	429, 913, 1485
BshFI	GGCC	9 cut(s)	242, 278, 314, 389, 470, 548, 1148, 1568, 1964
BshNI	GGYRCC	2 cut(s)	806, 994
BsiEI	CGRYCG	3 cut(s)	429, 913, 1485
BsiHKAI	GWGCWC	3 cut(s)	270, 456, 1972
BsiHKCI	CYCGRG	6 cut(s)	165, 315, 599, 608, 788, 1947
BslFI	GGGAC	3 cut(s)	942, 1192, 1926
BslI	CCNNNNNNNGG	7 cut(s)	333, 578, 965, 966, 1480, 1812, 1817
BsmAI	GTCTC	4 cut(s)	785, 1433, 1950, 2028
BsmBI	CGTCTC	1 cut(s)	1950
BsmFI	GGGAC	3 cut(s)	942, 1192, 1926
BsnI	GGCC	9 cut(s)	242, 278, 314, 389, 470, 548, 1148, 1568, 1964
Bso31I	GGTCTC	2 cut(s)	785, 1433
BsoBI	CYCGRG	6 cut(s)	165, 315, 599, 608, 788, 1947
Bsp119I	TTCGAA	2 cut(s)	1226, 1352
Bsp1286I	GDGCHC	6 cut(s)	270, 398, 456, 1602, 1901, 1972
Bsp143I	GATC	8 cut(s)	11, 583, 877, 910, 1020, 1545, 1745, 1791
Bsp19I	CCATGG	1 cut(s)	390
Bsp68I	TCGCGA	1 cut(s)	1080
BspACI	CCGC	8 cut(s)	50, 77, 212, 246, 530, 804, 818, 1086
BspANI	GGCC	9 cut(s)	242, 278, 314, 389, 470, 548, 1148, 1568, 1964
BspCNI	CTCAG	3 cut(s)	1117, 1443, 1944
BspFNI	CGCG	3 cut(s)	422, 481, 1080
BspLI	GGNNCC	8 cut(s)	808, 996, 1132, 1747, 1793, 1914, 1982, 2031
BspMI	ACCTGC	2 cut(s)	119, 618
BspPI	GGATC	7 cut(s)	591, 872, 1015, 1740, 1753, 1786, 1799
BspQI	GCTCTTC	3 cut(s)	1182, 1889, 1890
BspT104I	TTCGAA	2 cut(s)	1226, 1352
BspT107I	GGYRCC	2 cut(s)	806, 994
BspTNI	GGTCTC	2 cut(s)	785, 1433
BsrDI	GCAATG	1 cut(s)	1762
BsrFI	RCCGGY	2 cut(s)	809, 1528
BsrI	ACTGG	1 cut(s)	1965
BssAI	RCCGGY	2 cut(s)	809, 1528
BssECI	CCNNGG	5 cut(s)	315, 327, 390, 607, 1811
BssMI	GATC	8 cut(s)	11, 583, 877, 910, 1020, 1545, 1745, 1791
BssNI	GRCGYC	4 cut(s)	92, 324, 432, 807
BssT1I	CCWWGG	2 cut(s)	390, 1811
Bst2UI	CCWGG	4 cut(s)	89, 328, 472, 686
Bst4CI	ACNGT	2 cut(s)	1183, 1293
Bst6I	CTCTTC	5 cut(s)	686, 1182, 1483, 1889, 1890
BstACI	GRCGYC	4 cut(s)	92, 324, 432, 807
BstAPI	GCANNNNNTGC	2 cut(s)	120, 1586
BstBAI	YACGTR	1 cut(s)	457
BstBI	TTCGAA	2 cut(s)	1226, 1352
BstC8I	GCNNGC	9 cut(s)	148, 477, 811, 943, 1101, 1452, 1459, 1848, 1954
BstDEI	CTNAG	3 cut(s)	1125, 1430, 1931
BstDSI	CCRYGG	1 cut(s)	390
BstEII	GGTNACC	1 cut(s)	1067
BstENI	CCTNNNNNAGG	1 cut(s)	1815
BstF5I	GGATG	9 cut(s)	55, 174, 325, 342, 514, 772, 1169, 1558, 2009
BstFNI	CGCG	3 cut(s)	422, 481, 1080
BstH2I	RGCGCY	2 cut(s)	810, 1010
BstHHI	GCGC	3 cut(s)	481, 809, 1009
BstKTI	GATC	8 cut(s)	14, 586, 880, 913, 1023, 1548, 1748, 1794
BstMAI	GTCTC	4 cut(s)	785, 1433, 1950, 2028
BstMBI	GATC	8 cut(s)	11, 583, 877, 910, 1020, 1545, 1745, 1791
BstMCI	CGRYCG	3 cut(s)	429, 913, 1485
BstNI	CCWGG	4 cut(s)	89, 328, 472, 686
BstNSI	RCATGY	1 cut(s)	1454
BstPI	GGTNACC	1 cut(s)	1067
BstSLI	GKGCMC	1 cut(s)	398
BstUI	CGCG	3 cut(s)	422, 481, 1080
BstV1I	GCAGC	6 cut(s)	726, 813, 1039, 1133, 1189, 1441
BstV2I	GAAGAC	5 cut(s)	133, 227, 312, 790, 909
BstX2I	RGATCY	3 cut(s)	583, 1745, 1791
BstXI	CCANNNNNNTGG	1 cut(s)	1141
BstYI	RGATCY	3 cut(s)	583, 1745, 1791
BsuI	GTATCC	1 cut(s)	1771
BsuRI	GGCC	9 cut(s)	242, 278, 314, 389, 470, 548, 1148, 1568, 1964
BtgI	CCRYGG	1 cut(s)	390
BtgZI	GCGATG	1 cut(s)	1315
BtrI	CACGTC	1 cut(s)	1944
BtsCI	GGATG	9 cut(s)	55, 174, 325, 342, 514, 772, 1169, 1558, 2009
BtsI	GCAGTG	1 cut(s)	1873
BtsIMutI	CAGTG	2 cut(s)	1873, 1972
BtuMI	TCGCGA	1 cut(s)	1080
BveI	ACCTGC	2 cut(s)	119, 618
Cac8I	GCNNGC	9 cut(s)	148, 477, 811, 943, 1101, 1452, 1459, 1848, 1954
CaiI	CAGNNNCTG	1 cut(s)	1109
CfoI	GCGC	3 cut(s)	481, 809, 1009
Cfr10I	RCCGGY	2 cut(s)	809, 1528
Cfr13I	GGNCC	6 cut(s)	313, 387, 537, 1566, 1913, 1981
Cfr9I	CCCGGG	1 cut(s)	315
CseI	GACGC	4 cut(s)	81, 332, 411, 440
Csp6I	GTAC	2 cut(s)	43, 1492
CspCI	CAANNNNNGTGG	2 cut(s)	1266, 1301
CviAII	CATG	6 cut(s)	391, 871, 1135, 1451, 1988, 1997
CviQI	GTAC	2 cut(s)	43, 1492
DdeI	CTNAG	3 cut(s)	1125, 1430, 1931
DinI	GGCGCC	1 cut(s)	808
DpnI	GATC	8 cut(s)	13, 585, 879, 912, 1022, 1547, 1747, 1793
DpnII	GATC	8 cut(s)	11, 583, 877, 910, 1020, 1545, 1745, 1791
EaeI	YGGCCR	3 cut(s)	468, 546, 1146
Eam1104I	CTCTTC	5 cut(s)	686, 1182, 1483, 1889, 1890
EarI	CTCTTC	5 cut(s)	686, 1182, 1483, 1889, 1890
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	2 cut(s)	390, 1811
Eco24I	GRGCYC	3 cut(s)	270, 1602, 1901
Eco31I	GGTCTC	2 cut(s)	785, 1433
Eco32I	GATATC	1 cut(s)	858
Eco47I	GGWCC	3 cut(s)	537, 1913, 1981
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	740
Eco72I	CACGTG	1 cut(s)	457
Eco88I	CYCGRG	6 cut(s)	165, 315, 599, 608, 788, 1947
Eco91I	GGTNACC	1 cut(s)	1067
EcoICRI	GAGCTC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	1815
EcoO109I	RGGNCCY	2 cut(s)	1913, 1981
EcoO65I	GGTNACC	1 cut(s)	1067
EcoRI	GAATTC	1 cut(s)	1798
EcoRII	CCWGG	4 cut(s)	87, 326, 470, 684
EcoRV	GATATC	1 cut(s)	858
EcoT14I	CCWWGG	2 cut(s)	390, 1811
EcoT38I	GRGCYC	3 cut(s)	270, 1602, 1901
EgeI	GGCGCC	1 cut(s)	808
EheI	GGCGCC	1 cut(s)	808
ErhI	CCWWGG	2 cut(s)	390, 1811
Esp3I	CGTCTC	1 cut(s)	1950
FaeI	CATG	6 cut(s)	394, 874, 1138, 1454, 1991, 2000
FaqI	GGGAC	3 cut(s)	942, 1192, 1926
FatI	CATG	6 cut(s)	390, 870, 1134, 1450, 1987, 1996
FauI	CCCGC	1 cut(s)	1079
FbaI	TGATCA	1 cut(s)	1545
FblI	GTMKAC	2 cut(s)	429, 501
Fnu4HI	GCNGC	7 cut(s)	715, 802, 805, 1028, 1122, 1203, 1455
FokI	GGATG	9 cut(s)	42, 161, 332, 349, 521, 779, 1176, 1565, 1996
FriOI	GRGCYC	3 cut(s)	270, 1602, 1901
Fsp4HI	GCNGC	7 cut(s)	715, 802, 805, 1028, 1122, 1203, 1455
FspBI	CTAG	3 cut(s)	1095, 1812, 1889
GlaI	GCGC	3 cut(s)	480, 808, 1008
GluI	GCNGC	7 cut(s)	715, 802, 805, 1028, 1122, 1203, 1455
GsaI	CCCAGC	1 cut(s)	1113
HaeII	RGCGCY	2 cut(s)	810, 1010
HaeIII	GGCC	9 cut(s)	242, 278, 314, 389, 470, 548, 1148, 1568, 1964
HgaI	GACGC	4 cut(s)	81, 332, 411, 440
HhaI	GCGC	3 cut(s)	481, 809, 1009
Hin1I	GRCGYC	4 cut(s)	92, 324, 432, 807
Hin1II	CATG	6 cut(s)	394, 874, 1138, 1454, 1991, 2000
Hin6I	GCGC	3 cut(s)	479, 807, 1007
HinP1I	GCGC	3 cut(s)	479, 807, 1007
HincII	GTYRAC	2 cut(s)	430, 502
HindII	GTYRAC	2 cut(s)	430, 502
HindIII	AAGCTT	1 cut(s)	1770
HphI	GGTGA	7 cut(s)	100, 544, 782, 1061, 1429, 1601, 1642
Hpy166II	GTNNAC	3 cut(s)	430, 502, 773
Hpy8I	GTNNAC	3 cut(s)	430, 502, 773
Hpy99I	CGWCG	3 cut(s)	232, 427, 434
HpyAV	CCTTC	6 cut(s)	289, 715, 1816, 1911, 1931, 1998
HpyCH4III	ACNGT	2 cut(s)	1183, 1293
HpyCH4IV	ACGT	4 cut(s)	41, 456, 1943, 2052
HpyCH4V	TGCA	8 cut(s)	114, 801, 1052, 1103, 1517, 1754, 1767, 1987
HpyF3I	CTNAG	3 cut(s)	1125, 1430, 1931
HpySE526I	ACGT	4 cut(s)	41, 456, 1943, 2052
Hsp92I	GRCGYC	4 cut(s)	92, 324, 432, 807
Hsp92II	CATG	6 cut(s)	394, 874, 1138, 1454, 1991, 2000
HspAI	GCGC	3 cut(s)	479, 807, 1007
KasI	GGCGCC	1 cut(s)	806
KroI	GCCGGC	1 cut(s)	809
KroNI	GCCGGC	1 cut(s)	811
Ksp22I	TGATCA	1 cut(s)	1545
Kzo9I	GATC	8 cut(s)	11, 583, 877, 910, 1020, 1545, 1745, 1791
LguI	GCTCTTC	3 cut(s)	1182, 1889, 1890
LmnI	GCTCC	6 cut(s)	265, 273, 451, 574, 624, 1130
Lsp1109I	GCAGC	6 cut(s)	726, 813, 1039, 1133, 1189, 1441
LweI	GCATC	3 cut(s)	327, 1510, 1693
MaeI	CTAG	3 cut(s)	1095, 1812, 1889
MaeII	ACGT	4 cut(s)	41, 456, 1943, 2052
MaeIII	GTNAC	5 cut(s)	93, 883, 1034, 1067, 1696
MalI	GATC	8 cut(s)	13, 585, 879, 912, 1022, 1547, 1747, 1793
MboI	GATC	8 cut(s)	11, 583, 877, 910, 1020, 1545, 1745, 1791
MflI	RGATCY	3 cut(s)	583, 1745, 1791
MhlI	GDGCHC	6 cut(s)	270, 398, 456, 1602, 1901, 1972
MlsI	TGGCCA	1 cut(s)	470
MluCI	AATT	9 cut(s)	183, 461, 663, 676, 832, 1000, 1713, 1755, 1798
MluNI	TGGCCA	1 cut(s)	470
Mly113I	GGCGCC	1 cut(s)	807
MlyI	GAGTC	2 cut(s)	373, 391
MmeI	TCCRAC	2 cut(s)	202, 243
Mox20I	TGGCCA	1 cut(s)	470
MreI	CGCCGGCG	1 cut(s)	809
MroNI	GCCGGC	1 cut(s)	809
MroXI	GAANNNNTTC	3 cut(s)	140, 932, 1826
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	5 cut(s)	1158, 1242, 1605, 1662, 1670
MslI	CAYNNNNRTG	2 cut(s)	989, 1139
Msp20I	TGGCCA	1 cut(s)	470
MspA1I	CMGCKG	3 cut(s)	804, 1086, 1124
MvaI	CCWGG	4 cut(s)	89, 328, 472, 686
MvnI	CGCG	3 cut(s)	422, 481, 1080
NaeI	GCCGGC	1 cut(s)	811
NarI	GGCGCC	1 cut(s)	807
NciI	CCSGG	9 cut(s)	47, 197, 316, 317, 506, 550, 573, 777, 1613
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	8 cut(s)	11, 583, 877, 910, 1020, 1545, 1745, 1791
NgoMIV	GCCGGC	1 cut(s)	809
NlaIII	CATG	6 cut(s)	394, 874, 1138, 1454, 1991, 2000
NlaIV	GGNNCC	8 cut(s)	808, 996, 1132, 1747, 1793, 1914, 1982, 2031
NmeAIII	GCCGAG	1 cut(s)	1174
NmuCI	GTSAC	4 cut(s)	93, 883, 1067, 1696
NruI	TCGCGA	1 cut(s)	1080
NspI	RCATGY	1 cut(s)	1454
NspV	TTCGAA	2 cut(s)	1226, 1352
OliI	CACNNNNGTG	1 cut(s)	989
PaeI	GCATGC	1 cut(s)	1454
PaeR7I	CTCGAG	2 cut(s)	599, 1947
PaqCI	CACCTGC	2 cut(s)	119, 618
PciSI	GCTCTTC	3 cut(s)	1182, 1889, 1890
PcsI	WCGNNNNNNNCGW	2 cut(s)	426, 435
PdiI	GCCGGC	1 cut(s)	811
PdmI	GAANNNNTTC	3 cut(s)	140, 932, 1826
PflFI	GACNNNGTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	333
PkrI	GCNGC	7 cut(s)	716, 803, 806, 1029, 1123, 1204, 1456
Ple19I	CGATCG	1 cut(s)	913
PleI	GAGTC	2 cut(s)	372, 390
PluTI	GGCGCC	1 cut(s)	810
PmaCI	CACGTG	1 cut(s)	457
PmlI	CACGTG	1 cut(s)	457
PpsI	GAGTC	2 cut(s)	372, 390
Ppu21I	YACGTR	1 cut(s)	457
PpuMI	RGGWCCY	2 cut(s)	1913, 1981
PshBI	ATTAAT	1 cut(s)	1605
Psp124BI	GAGCTC	1 cut(s)	270
Psp5II	RGGWCCY	2 cut(s)	1913, 1981
Psp6I	CCWGG	4 cut(s)	87, 326, 470, 684
PspCI	CACGTG	1 cut(s)	457
PspEI	GGTNACC	1 cut(s)	1067
PspFI	CCCAGC	1 cut(s)	1109
PspGI	CCWGG	4 cut(s)	87, 326, 470, 684
PspN4I	GGNNCC	8 cut(s)	808, 996, 1132, 1747, 1793, 1914, 1982, 2031
PspPI	GGNCC	6 cut(s)	313, 387, 537, 1566, 1913, 1981
PspPPI	RGGWCCY	2 cut(s)	1913, 1981
PstNI	CAGNNNCTG	1 cut(s)	1109
PsuI	RGATCY	3 cut(s)	583, 1745, 1791
PsyI	GACNNNGTC	1 cut(s)	259
PvuI	CGATCG	1 cut(s)	913
PvuII	CAGCTG	1 cut(s)	1124
RruI	TCGCGA	1 cut(s)	1080
RsaI	GTAC	2 cut(s)	44, 1493
RsaNI	GTAC	2 cut(s)	43, 1492
RseI	CAYNNNNRTG	2 cut(s)	989, 1139
SacI	GAGCTC	1 cut(s)	270
SalI	GTCGAC	2 cut(s)	428, 500
SapI	GCTCTTC	3 cut(s)	1182, 1889, 1890
SaqAI	TTAA	5 cut(s)	1158, 1242, 1605, 1662, 1670
SatI	GCNGC	7 cut(s)	715, 802, 805, 1028, 1122, 1203, 1455
Sau3AI	GATC	8 cut(s)	11, 583, 877, 910, 1020, 1545, 1745, 1791
Sau96I	GGNCC	6 cut(s)	313, 387, 537, 1566, 1913, 1981
SchI	GAGTC	2 cut(s)	373, 391
SduI	GDGCHC	6 cut(s)	270, 398, 456, 1602, 1901, 1972
SfaNI	GCATC	3 cut(s)	327, 1510, 1693
SfoI	GGCGCC	1 cut(s)	808
Sfr274I	CTCGAG	2 cut(s)	599, 1947
SfuI	TTCGAA	2 cut(s)	1226, 1352
SgrAI	CRCCGGYG	1 cut(s)	809
SinI	GGWCC	3 cut(s)	537, 1913, 1981
SlaI	CTCGAG	2 cut(s)	599, 1947
SmaI	CCCGGG	1 cut(s)	317
SmiMI	CAYNNNNRTG	2 cut(s)	989, 1139
SmlI	CTYRAG	5 cut(s)	379, 599, 977, 1169, 1947
SmoI	CTYRAG	5 cut(s)	379, 599, 977, 1169, 1947
SphI	GCATGC	1 cut(s)	1454
Sse9I	AATT	9 cut(s)	183, 461, 663, 676, 832, 1000, 1713, 1755, 1798
SsiI	CCGC	8 cut(s)	50, 77, 212, 246, 530, 804, 818, 1086
SspDI	GGCGCC	1 cut(s)	806
SspMI	CTAG	3 cut(s)	1095, 1812, 1889
SstI	GAGCTC	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	390, 1811
TaaI	ACNGT	2 cut(s)	1183, 1293
TaiI	ACGT	4 cut(s)	44, 459, 1946, 2055
TaqII	GACCGA	3 cut(s)	415, 903, 1471
TasI	AATT	9 cut(s)	183, 461, 663, 676, 832, 1000, 1713, 1755, 1798
TatI	WGTACW	1 cut(s)	1491
TauI	GCSGC	1 cut(s)	807
Tru1I	TTAA	5 cut(s)	1158, 1242, 1605, 1662, 1670
Tru9I	TTAA	5 cut(s)	1158, 1242, 1605, 1662, 1670
TscAI	CASTG	2 cut(s)	1873, 1972
TseFI	GTSAC	4 cut(s)	93, 883, 1067, 1696
TseI	GCWGC	6 cut(s)	714, 801, 1027, 1121, 1202, 1454
Tsp45I	GTSAC	4 cut(s)	93, 883, 1067, 1696
TspDTI	ATGAA	8 cut(s)	44, 237, 359, 510, 1151, 1224, 2013, 2035
TspGWI	ACGGA	6 cut(s)	48, 427, 529, 836, 1001, 1738
TspMI	CCCGGG	1 cut(s)	315
TspRI	CASTG	2 cut(s)	1873, 1972
Tth111I	GACNNNGTC	1 cut(s)	259
Van91I	CCANNNNNTGG	1 cut(s)	333
VpaK11BI	GGWCC	3 cut(s)	537, 1913, 1981
VspI	ATTAAT	1 cut(s)	1605
XagI	CCTNNNNNAGG	1 cut(s)	1815
XapI	RAATTY	3 cut(s)	676, 1000, 1798
XceI	RCATGY	1 cut(s)	1454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1141
XhoI	CTCGAG	2 cut(s)	599, 1947
XmaI	CCCGGG	1 cut(s)	315
XmaJI	CCTAGG	1 cut(s)	1811
XmiI	GTMKAC	2 cut(s)	429, 501
XmnI	GAANNNNTTC	3 cut(s)	140, 932, 1826
XspI	CTAG	3 cut(s)	1095, 1812, 1889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.