Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003359

Physical Location & Seq

Genomic Coordinates Reverse (-)

67344040 .. 67346052

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG434500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGATCCAAAGATTAAACTCGGGTCGTCGGATCCTAACCTACCCGGCGGTTCATCCCTGCGAAGCCATAGCTCCGGAGACGCTTCTGATCTCACTCATCGCTCTCACCCACAGCATTTGCTCCTACAAATCCAAATGCATCGCCAGCAACAAGCGAAACGCTTTGGAAGCAATCCGCCAAATCGGAGTGATTCGGGTTTTTTTGGAAGAGATCCCGGGTCTTCCGGATTCGACCGTTTTGAGCTTCTCGGAGCTCCATTTGGCTTTCCAGAAGGTTCAGTACTTGCTGGAAGACTGTACCCGGGACGACGCCCGGCTATGGATGCTGATGAATTCGGAGCGGGTTTCGAACCAGTTCCGGGTCTTGATTCGGACCATGGCGACGGCTCTCGATGTTCTGCCTCTTGATGGCATCCACGTGGCAGTTGAGGTGAAGGAGCAGGTCGAATTGGTGATGAGGCAAGCGCGGCGGGTGAGGTTCCAAGTTGACCCGGAAGATAAGCGGGTCGTCGAGGCGGTTAAGAAAGTTTTGATCGGGTTCGAGAAACGGGTCGACCCGGATAGGAGTGAGCTGGAGCGGGTACTTGATCATGTTGGGATTCGGAGATGGAGTAGGTGCGAGATGGAGGTGAGATTTTTGGAATCTGAAATTGGGTTTGAGAATCTGAGAGAGGTGGGGTTGCTGAGCAGCCTGAAGGGGTTGTTGTGCTACTGCCGGTGCGTCATGTTCGGGTCTGTGGACGGGTTACCGGGCCCGCGACCCGAGCCCAGTAACCGCAGCGAGGTGGTGAGCTGCCTGAATTTGGAAGATTTCCGGTGTCCGATATCGCTGGAGATAATGACGGATCCGGTGACGATCCGGACGGGTCACAGCTACGACCGGAGCTCCATTATGAAGTGGTTCAGAGCTGGAAAGCCGATTTGTCCGAAAACAGGGGAGAAAATGAAGAGCATGGAGGTGGTGCCTAATTTGGCACTGAAGAGGTTGATTCAGCAGTACTGCAATGAGAATGGGATTCCGTTTGGCGATTCGGGTCGTCGGAACCGCGACATTGGGAGGAGTACAGTTGCAGGTAGCTCGGCGGCTGAGGGAGCTATGAAGATGGTGGCGGAGTTTCTCTGTGCAAGTGTTGGGACTGGATCGAATAAGGCTGCTTATGAGATTCGGCTTCTTTCGAAAACAAGCATTTTTAACAGGTCTTGTTTGGTGGAAGCTGGAGTGGTGCCGCATTTGTTGAAGCTGTTGGCTTCTGCGGATTCGGAGACTCAAGAGAATGCAGTTGCAGGGTTGTTGAATCTGTCCAAGCATTCGAAAGGGAAAGCTGTGATTGTTCAAAATGGGGGTGTGGATTTGGTTGTGGATGTTCTGAAGGAGGGTCTCAAAGTTGAGGCTTGCCAGCATGCTGCTGGCACTTTGTTTTATCTTGCTTCCATTGAGGAGTACCGGATATTGATCGGAGAAAACCCGAGGGCCATACCGGCTCTGAGGGAGCTGATCAAGAACGGTTCTGATCGAGGCAAGAAGAATGCATTGGTTGCTATATTCGGCCTGCTTACACACCCTGCAAATCATACAAGGGTGTTAGCAGCTGGGGTGGTTCCTTTGCTGTTTGAGATACTGACATCTCTTGACAGTGAAGTTCTTGTGACAGATTCTCTAGCGATTCTCGCAACTCTGGCTGAGAAACCCGAGGGAGCAGTTGCAATTTCGCGTTGCAAGGCTTTGGATTCGATTGTGGGGATTCTGAATTCTTCGACTTCAAGGGCGTCCAAGGAGTTCTGTGTGTCTTTGTTGCTGGCTCTTTGTGCAAATGGTGGCCACAATGTGGTTGCTCTTTTGGTTAAGAGCCCTTCTCTTATGGCATGTTTGTATTCCCAACTTAGTGAAGGCACATCTAGAGCAAGCAAAAGGGCCAGTGCTCTCATCAAGGTCCTCCATGAATTCCATGAAACAAGATCGTCTGGTCCAGTCACTCGGGTTCTTCCACAGGAGCGATTTGTTCACGTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

670

Amino Acids

73.69

Weight (kDa)

8.8

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB10_N	PF25368	58 - 157	4.4e-13	PUB10-like, N-terminal domain
U-box	PF04564	269 - 337	9.7e-17	U-box domain
ARM_ARMC5	PF24768	361 - 546	4.9e-09	ARMC5
ARM_PUB	PF25598	382 - 646	3.4e-14	Plant U-box protein ARM repeat region
Arm	PF00514	398 - 434	2.7e-09	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10560 AT1G60190
fragaria_vesca	FvH4_4g34620 FvH4_5g05140
malus_domestica	MD06G1177100.v1.1 MD13G1090900.v1.1 MD14G1183300.v1.1 MD16G1091300.v1.1
prunus_persica	Prupe.1G255000_v2.0.a1 Prupe.5G175800_v2.0.a1
pyrus_communis	pycom06g15720 pycom13g07890 pycom14g15220 pycom16g07800
rosa_chinensis	RchiOBHm_Chr4g0443981 RchiOBHm_Chr7g0193831
rosa_laevigata	RLG00000004242 RLG00000005870
rosa_multiflora	Rmu_co8252843.1_g000001 Rmu_sc0001436.1_g000032 Rmu_sc0027702.1_g000002 Rmu_sc0029481.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261790 Rroxscaffold_5G00384530
rosa_rugosa	Rorug04G0348700 Rorug07G0012400
rosa_samantha	Rh4AG409400 Rh4BG420500 Rh4CG434500 Rh4DG415500 Rh7AG139000 Rh7BG139200 Rh7CG142900 Rh7DG140500
rosa_wichuraiana	Rw4G035170 Rw7G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	430, 1061
AccB1I	GGYRCC	2 cut(s)	961, 1222
AccB7I	CCANNNNNTGG	1 cut(s)	1825
AccBSI	CCGCTC	2 cut(s)	340, 577
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	4 cut(s)	466, 757, 1047, 1711
AccIII	TCCGGA	3 cut(s)	73, 223, 858
AclWI	GGATC	7 cut(s)	25, 38, 205, 839, 850, 852, 1147
AcoI	YGGCCR	1 cut(s)	1816
AcsI	RAATTY	4 cut(s)	331, 799, 1747, 1940
AcuI	CTGAAG	3 cut(s)	713, 998, 1388
AcvI	CACGTG	1 cut(s)	418
AcyI	GRCGYC	2 cut(s)	309, 1766
AdeI	CACNNNGTG	1 cut(s)	1825
AfaI	GTAC	6 cut(s)	281, 298, 582, 998, 1063, 1442
AfiI	CCNNNNNNNGG	7 cut(s)	318, 358, 407, 781, 802, 932, 1825
AgsI	TTSAA	4 cut(s)	1237, 1294, 1334, 1761
AjuI	GAANNNNNNNTTGG	4 cut(s)	633, 665, 1514, 1546
Alw21I	GWGCWC	3 cut(s)	255, 887, 1921
Alw26I	GTCTC	3 cut(s)	71, 1256, 1382
AlwI	GGATC	7 cut(s)	25, 38, 205, 839, 850, 852, 1147
Ama87I	CYCGRG	7 cut(s)	19, 214, 300, 761, 1465, 1688, 1974
Aor13HI	TCCGGA	3 cut(s)	73, 223, 858
AoxI	GGCC	5 cut(s)	751, 1470, 1546, 1816, 1911
ApaI	GGGCCC	1 cut(s)	755
ApeKI	GCWGC	6 cut(s)	687, 777, 792, 1151, 1403, 1586
ApoI	RAATTY	4 cut(s)	331, 799, 1747, 1940
Asp700I	GAANNNNTTC	2 cut(s)	353, 899
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	7 cut(s)	372, 751, 752, 1470, 1911, 1930, 1964
AsuHPI	GGTGA	7 cut(s)	97, 442, 463, 484, 640, 799, 862
AsuII	TTCGAA	3 cut(s)	347, 1175, 1310
AvaI	CYCGRG	7 cut(s)	19, 214, 300, 761, 1465, 1688, 1974
AvaII	GGWCC	3 cut(s)	372, 1930, 1964
BaeGI	GKGCMC	1 cut(s)	755
BalI	TGGCCA	1 cut(s)	1818
BamHI	GGATCC	2 cut(s)	30, 844
BanI	GGYRCC	2 cut(s)	961, 1222
BanII	GRGCYC	5 cut(s)	255, 755, 768, 887, 1850
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BbrPI	CACGTG	1 cut(s)	418
BbsI	GAAGAC	2 cut(s)	212, 297
Bbv12I	GWGCWC	3 cut(s)	255, 887, 1921
BbvCI	CCTCAGC	1 cut(s)	1086
BbvI	GCAGC	6 cut(s)	699, 779, 789, 1138, 1390, 1598
BccI	CCATC	4 cut(s)	401, 600, 616, 1096
BceAI	ACGGC	1 cut(s)	399
BcgI	CGANNNNNNTGC	2 cut(s)	1059, 1093
BclI	TGATCA	2 cut(s)	586, 1494
BcoDI	GTCTC	3 cut(s)	71, 1256, 1382
BfaI	CTAG	2 cut(s)	1658, 1896
BfuAI	ACCTGC	2 cut(s)	430, 1061
BglI	GCCNNNNNGGC	1 cut(s)	1478
BisI	GCNGC	9 cut(s)	467, 688, 778, 793, 1083, 1152, 1226, 1404, 1587
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	9 cut(s)	468, 689, 779, 794, 1084, 1153, 1227, 1405, 1588
BmcAI	AGTACT	2 cut(s)	281, 998
Bme18I	GGWCC	3 cut(s)	372, 1930, 1964
BmeT110I	CYCGRG	7 cut(s)	19, 214, 300, 761, 1465, 1688, 1974
BmgT120I	GGNCC	7 cut(s)	372, 751, 752, 1470, 1911, 1930, 1964
BmiI	GGNNCC	8 cut(s)	32, 479, 753, 846, 963, 1043, 1224, 1599
BmrI	ACTGGG	1 cut(s)	762
BmsI	GCATC	3 cut(s)	147, 312, 420
BmuI	ACTGGG	1 cut(s)	762
BpiI	GAAGAC	2 cut(s)	212, 297
BplI	GAGNNNNNCTC	2 cut(s)	1837, 1869
BpmI	CTGGAG	3 cut(s)	593, 851, 1236
Bpu10I	CCTNAGC	1 cut(s)	1086
Bpu1102I	GCTNAGC	1 cut(s)	683
Bpu14I	TTCGAA	3 cut(s)	347, 1175, 1310
BpuEI	CTTGAG	1 cut(s)	1251
BsaAI	YACGTR	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	1451
BsaHI	GRCGYC	2 cut(s)	309, 1766
BsaI	GGTCTC	1 cut(s)	1382
BsaJI	CCNNGG	6 cut(s)	214, 300, 375, 1466, 1689, 1770
BsaWI	WCCGGW	7 cut(s)	73, 223, 813, 847, 858, 879, 1443
BsaXI	ACNNNNNCTCC	4 cut(s)	595, 625, 869, 899
Bsc4I	CCNNNNNNNGG	7 cut(s)	318, 358, 407, 781, 802, 932, 1825
Bse118I	RCCGGY	2 cut(s)	714, 1477
Bse1I	ACTGG	5 cut(s)	352, 768, 1141, 1914, 1967
Bse3DI	GCAATG	1 cut(s)	1009
Bse8I	GATNNNNATC	1 cut(s)	1451
BseAI	TCCGGA	3 cut(s)	73, 223, 858
BseDI	CCNNGG	6 cut(s)	214, 300, 375, 1466, 1689, 1770
BseGI	GGATG	4 cut(s)	52, 327, 411, 1366
BseJI	GATNNNNATC	1 cut(s)	1451
BseLI	CCNNNNNNNGG	7 cut(s)	318, 358, 407, 781, 802, 932, 1825
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	5 cut(s)	656, 674, 1077, 1475, 1671
BseNI	ACTGG	5 cut(s)	352, 768, 1141, 1914, 1967
BseRI	GAGGAG	2 cut(s)	1072, 1451
BseSI	GKGCMC	1 cut(s)	755
BseXI	GCAGC	6 cut(s)	699, 779, 789, 1138, 1390, 1598
BseYI	CCCAGC	1 cut(s)	1589
Bsh1236I	CGCG	4 cut(s)	466, 757, 1047, 1711
Bsh1285I	CGRYCG	2 cut(s)	234, 880
BshFI	GGCC	5 cut(s)	753, 1472, 1548, 1818, 1913
BshNI	GGYRCC	2 cut(s)	961, 1222
BsiEI	CGRYCG	2 cut(s)	234, 880
BsiHKAI	GWGCWC	3 cut(s)	255, 887, 1921
BsiHKCI	CYCGRG	7 cut(s)	19, 214, 300, 761, 1465, 1688, 1974
BslFI	GGGAC	2 cut(s)	317, 1147
BslI	CCNNNNNNNGG	7 cut(s)	318, 358, 407, 781, 802, 932, 1825
BsmAI	GTCTC	3 cut(s)	71, 1256, 1382
BsmBI	CGTCTC	1 cut(s)	71
BsmFI	GGGAC	2 cut(s)	317, 1147
BsmI	GAATGC	3 cut(s)	1279, 1306, 1531
BsnI	GGCC	5 cut(s)	753, 1472, 1548, 1818, 1913
Bso31I	GGTCTC	1 cut(s)	1382
BsoBI	CYCGRG	7 cut(s)	19, 214, 300, 761, 1465, 1688, 1974
Bsp119I	TTCGAA	3 cut(s)	347, 1175, 1310
Bsp120I	GGGCCC	1 cut(s)	751
Bsp1286I	GDGCHC	6 cut(s)	255, 755, 768, 887, 1850, 1921
Bsp13I	TCCGGA	3 cut(s)	73, 223, 858
Bsp1720I	GCTNAGC	1 cut(s)	683
Bsp19I	CCATGG	1 cut(s)	375
BspANI	GGCC	5 cut(s)	753, 1472, 1548, 1818, 1913
BspCNI	CTCAG	5 cut(s)	657, 675, 1078, 1476, 1672
BspEI	TCCGGA	3 cut(s)	73, 223, 858
BspFNI	CGCG	4 cut(s)	466, 757, 1047, 1711
BspLI	GGNNCC	8 cut(s)	32, 479, 753, 846, 963, 1043, 1224, 1599
BspMI	ACCTGC	2 cut(s)	430, 1061
BspPI	GGATC	7 cut(s)	25, 38, 205, 839, 850, 852, 1147
BspQI	GCTCTTC	1 cut(s)	941
BspT104I	TTCGAA	3 cut(s)	347, 1175, 1310
BspT107I	GGYRCC	2 cut(s)	961, 1222
BspTNI	GGTCTC	1 cut(s)	1382
BsrBI	CCGCTC	2 cut(s)	340, 577
BsrDI	GCAATG	1 cut(s)	1009
BsrFI	RCCGGY	2 cut(s)	714, 1477
BsrI	ACTGG	5 cut(s)	352, 768, 1141, 1914, 1967
BssAI	RCCGGY	2 cut(s)	714, 1477
BssECI	CCNNGG	6 cut(s)	214, 300, 375, 1466, 1689, 1770
BssNI	GRCGYC	2 cut(s)	309, 1766
BssT1I	CCWWGG	2 cut(s)	375, 1770
Bst4CI	ACNGT	5 cut(s)	235, 296, 1066, 1505, 1634
Bst6I	CTCTTC	3 cut(s)	201, 941, 974
BstACI	GRCGYC	2 cut(s)	309, 1766
BstAPI	GCANNNNNTGC	1 cut(s)	1535
BstBAI	YACGTR	1 cut(s)	418
BstBI	TTCGAA	3 cut(s)	347, 1175, 1310
BstDEI	CTNAG	6 cut(s)	665, 683, 1086, 1484, 1680, 1880
BstDSI	CCRYGG	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	744
BstF5I	GGATG	4 cut(s)	52, 327, 411, 1366
BstFNI	CGCG	4 cut(s)	466, 757, 1047, 1711
BstHHI	GCGC	1 cut(s)	466
BstMAI	GTCTC	3 cut(s)	71, 1256, 1382
BstMCI	CGRYCG	2 cut(s)	234, 880
BstNSI	RCATGY	2 cut(s)	1403, 1866
BstPI	GGTNACC	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	755
BstUI	CGCG	4 cut(s)	466, 757, 1047, 1711
BstV1I	GCAGC	6 cut(s)	699, 779, 789, 1138, 1390, 1598
BstV2I	GAAGAC	2 cut(s)	212, 297
BstX2I	RGATCY	3 cut(s)	30, 210, 844
BstYI	RGATCY	3 cut(s)	30, 210, 844
BsuRI	GGCC	5 cut(s)	753, 1472, 1548, 1818, 1913
BtgI	CCRYGG	1 cut(s)	375
BtgZI	GCGATG	2 cut(s)	82, 124
BtsCI	GGATG	4 cut(s)	52, 327, 411, 1366
BtsIMutI	CAGTG	3 cut(s)	974, 1639, 1921
BveI	ACCTGC	2 cut(s)	430, 1061
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	2 cut(s)	714, 1477
Cfr13I	GGNCC	7 cut(s)	372, 751, 752, 1470, 1911, 1930, 1964
Cfr9I	CCCGGG	2 cut(s)	214, 300
CseI	GACGC	4 cut(s)	88, 317, 709, 1755
Csp6I	GTAC	6 cut(s)	280, 297, 581, 997, 1062, 1441
CspCI	CAANNNNNGTGG	2 cut(s)	98, 133
CviAII	CATG	8 cut(s)	376, 590, 724, 952, 1400, 1863, 1937, 1946
CviQI	GTAC	6 cut(s)	280, 297, 581, 997, 1062, 1441
DdeI	CTNAG	6 cut(s)	665, 683, 1086, 1484, 1680, 1880
DraIII	CACNNNGTG	1 cut(s)	1825
EaeI	YGGCCR	1 cut(s)	1816
Eam1104I	CTCTTC	3 cut(s)	201, 941, 974
EarI	CTCTTC	3 cut(s)	201, 941, 974
EciI	GGCGGA	2 cut(s)	164, 1124
Ecl136II	GAGCTC	2 cut(s)	253, 885
Eco130I	CCWWGG	2 cut(s)	375, 1770
Eco24I	GRGCYC	5 cut(s)	255, 755, 768, 887, 1850
Eco31I	GGTCTC	1 cut(s)	1382
Eco32I	GATATC	1 cut(s)	825
Eco47I	GGWCC	3 cut(s)	372, 1930, 1964
Eco53kI	GAGCTC	2 cut(s)	253, 885
Eco57I	CTGAAG	3 cut(s)	713, 998, 1388
Eco72I	CACGTG	1 cut(s)	418
Eco88I	CYCGRG	7 cut(s)	19, 214, 300, 761, 1465, 1688, 1974
Eco91I	GGTNACC	1 cut(s)	744
EcoICRI	GAGCTC	2 cut(s)	253, 885
EcoO109I	RGGNCCY	1 cut(s)	1930
EcoO65I	GGTNACC	1 cut(s)	744
EcoRI	GAATTC	3 cut(s)	331, 1747, 1940
EcoRV	GATATC	1 cut(s)	825
EcoT14I	CCWWGG	2 cut(s)	375, 1770
EcoT22I	ATGCAT	2 cut(s)	140, 1531
EcoT38I	GRGCYC	5 cut(s)	255, 755, 768, 887, 1850
ErhI	CCWWGG	2 cut(s)	375, 1770
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	8 cut(s)	379, 593, 727, 955, 1403, 1866, 1940, 1949
FaqI	GGGAC	2 cut(s)	317, 1147
FatI	CATG	8 cut(s)	375, 589, 723, 951, 1399, 1862, 1936, 1945
FauI	CCCGC	5 cut(s)	333, 462, 495, 570, 762
FbaI	TGATCA	2 cut(s)	586, 1494
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	9 cut(s)	467, 688, 778, 793, 1083, 1152, 1226, 1404, 1587
FokI	GGATG	4 cut(s)	39, 334, 398, 1373
FriOI	GRGCYC	5 cut(s)	255, 755, 768, 887, 1850
Fsp4HI	GCNGC	9 cut(s)	467, 688, 778, 793, 1083, 1152, 1226, 1404, 1587
FspBI	CTAG	2 cut(s)	1658, 1896
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	9 cut(s)	467, 688, 778, 793, 1083, 1152, 1226, 1404, 1587
GsaI	CCCAGC	1 cut(s)	1593
GsuI	CTGGAG	3 cut(s)	593, 851, 1236
HaeIII	GGCC	5 cut(s)	753, 1472, 1548, 1818, 1913
HgaI	GACGC	4 cut(s)	88, 317, 709, 1755
HhaI	GCGC	1 cut(s)	466
Hin1I	GRCGYC	2 cut(s)	309, 1766
Hin1II	CATG	8 cut(s)	379, 593, 727, 955, 1403, 1866, 1940, 1949
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HincII	GTYRAC	2 cut(s)	487, 553
HindII	GTYRAC	2 cut(s)	487, 553
HphI	GGTGA	7 cut(s)	97, 442, 463, 484, 640, 799, 862
Hpy166II	GTNNAC	4 cut(s)	487, 553, 739, 2002
Hpy8I	GTNNAC	4 cut(s)	487, 553, 739, 2002
Hpy99I	CGWCG	5 cut(s)	30, 311, 385, 512, 1041
HpyAV	CCTTC	6 cut(s)	265, 427, 688, 1363, 1860, 1880
HpyCH4III	ACNGT	5 cut(s)	235, 296, 1066, 1505, 1634
HpyCH4IV	ACGT	2 cut(s)	417, 2004
HpyF3I	CTNAG	6 cut(s)	665, 683, 1086, 1484, 1680, 1880
HpySE526I	ACGT	2 cut(s)	417, 2004
Hsp92I	GRCGYC	2 cut(s)	309, 1766
Hsp92II	CATG	8 cut(s)	379, 593, 727, 955, 1403, 1866, 1940, 1949
HspAI	GCGC	1 cut(s)	464
Kpn2I	TCCGGA	3 cut(s)	73, 223, 858
Ksp22I	TGATCA	2 cut(s)	586, 1494
LguI	GCTCTTC	1 cut(s)	941
Lsp1109I	GCAGC	6 cut(s)	699, 779, 789, 1138, 1390, 1598
LweI	GCATC	3 cut(s)	147, 312, 420
MaeI	CTAG	2 cut(s)	1658, 1896
MaeII	ACGT	2 cut(s)	417, 2004
MaeIII	GTNAC	6 cut(s)	744, 770, 850, 866, 1645, 1969
MbiI	CCGCTC	2 cut(s)	340, 577
MflI	RGATCY	3 cut(s)	30, 210, 844
MhlI	GDGCHC	6 cut(s)	255, 755, 768, 887, 1850, 1921
MlsI	TGGCCA	1 cut(s)	1818
MluCI	AATT	8 cut(s)	331, 446, 648, 799, 967, 1704, 1747, 1940
MluNI	TGGCCA	1 cut(s)	1818
MlyI	GAGTC	1 cut(s)	1258
MmeI	TCCRAC	2 cut(s)	8, 1019
Mox20I	TGGCCA	1 cut(s)	1818
Mph1103I	ATGCAT	2 cut(s)	140, 1531
MroI	TCCGGA	3 cut(s)	73, 223, 858
MroXI	GAANNNNTTC	2 cut(s)	353, 899
MscI	TGGCCA	1 cut(s)	1818
MseI	TTAA	4 cut(s)	14, 519, 1191, 1842
MslI	CAYNNNNRTG	2 cut(s)	416, 956
Msp20I	TGGCCA	1 cut(s)	1818
MspA1I	CMGCKG	1 cut(s)	1589
Mva1269I	GAATGC	3 cut(s)	1279, 1306, 1531
MvnI	CGCG	4 cut(s)	466, 757, 1047, 1711
NcoI	CCATGG	1 cut(s)	375
NlaIII	CATG	8 cut(s)	379, 593, 727, 955, 1403, 1866, 1940, 1949
NlaIV	GGNNCC	8 cut(s)	32, 479, 753, 846, 963, 1043, 1224, 1599
NmeAIII	GCCGAG	1 cut(s)	1058
NmuCI	GTSAC	4 cut(s)	850, 866, 1645, 1969
NsiI	ATGCAT	2 cut(s)	140, 1531
NspI	RCATGY	2 cut(s)	1403, 1866
NspV	TTCGAA	3 cut(s)	347, 1175, 1310
PaeI	GCATGC	1 cut(s)	1403
PciSI	GCTCTTC	1 cut(s)	941
PctI	GAATGC	3 cut(s)	1279, 1306, 1531
PdmI	GAANNNNTTC	2 cut(s)	353, 899
PflMI	CCANNNNNTGG	1 cut(s)	1825
PkrI	GCNGC	9 cut(s)	468, 689, 779, 794, 1084, 1153, 1227, 1405, 1588
PleI	GAGTC	1 cut(s)	1258
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	1258
Ppu21I	YACGTR	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	1930
Psp124BI	GAGCTC	2 cut(s)	255, 887
Psp5II	RGGWCCY	1 cut(s)	1930
PspCI	CACGTG	1 cut(s)	418
PspEI	GGTNACC	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	1589
PspN4I	GGNNCC	8 cut(s)	32, 479, 753, 846, 963, 1043, 1224, 1599
PspOMI	GGGCCC	1 cut(s)	751
PspPI	GGNCC	7 cut(s)	372, 751, 752, 1470, 1911, 1930, 1964
PspPPI	RGGWCCY	1 cut(s)	1930
PsuI	RGATCY	3 cut(s)	30, 210, 844
PvuII	CAGCTG	1 cut(s)	1589
RsaI	GTAC	6 cut(s)	281, 298, 582, 998, 1063, 1442
RsaNI	GTAC	6 cut(s)	280, 297, 581, 997, 1062, 1441
RseI	CAYNNNNRTG	2 cut(s)	416, 956
SacI	GAGCTC	2 cut(s)	255, 887
SalI	GTCGAC	1 cut(s)	551
SapI	GCTCTTC	1 cut(s)	941
SaqAI	TTAA	4 cut(s)	14, 519, 1191, 1842
SatI	GCNGC	9 cut(s)	467, 688, 778, 793, 1083, 1152, 1226, 1404, 1587
Sau96I	GGNCC	7 cut(s)	372, 751, 752, 1470, 1911, 1930, 1964
ScaI	AGTACT	2 cut(s)	281, 998
SchI	GAGTC	1 cut(s)	1258
SduI	GDGCHC	6 cut(s)	255, 755, 768, 887, 1850, 1921
SfaNI	GCATC	3 cut(s)	147, 312, 420
SfuI	TTCGAA	3 cut(s)	347, 1175, 1310
SinI	GGWCC	3 cut(s)	372, 1930, 1964
SmaI	CCCGGG	2 cut(s)	216, 302
SmiMI	CAYNNNNRTG	2 cut(s)	416, 956
SmlI	CTYRAG	1 cut(s)	1266
SmoI	CTYRAG	1 cut(s)	1266
SphI	GCATGC	1 cut(s)	1403
Sse9I	AATT	8 cut(s)	331, 446, 648, 799, 967, 1704, 1747, 1940
SspMI	CTAG	2 cut(s)	1658, 1896
SstI	GAGCTC	2 cut(s)	255, 887
StyI	CCWWGG	2 cut(s)	375, 1770
TaaI	ACNGT	5 cut(s)	235, 296, 1066, 1505, 1634
TaiI	ACGT	2 cut(s)	420, 2007
TasI	AATT	8 cut(s)	331, 446, 648, 799, 967, 1704, 1747, 1940
TatI	WGTACW	3 cut(s)	279, 996, 1061
TauI	GCSGC	3 cut(s)	469, 1085, 1228
Tru1I	TTAA	4 cut(s)	14, 519, 1191, 1842
Tru9I	TTAA	4 cut(s)	14, 519, 1191, 1842
TscAI	CASTG	3 cut(s)	981, 1639, 1921
TseFI	GTSAC	4 cut(s)	850, 866, 1645, 1969
TseI	GCWGC	6 cut(s)	687, 777, 792, 1151, 1403, 1586
Tsp45I	GTSAC	4 cut(s)	850, 866, 1645, 1969
TspDTI	ATGAA	7 cut(s)	41, 344, 908, 959, 1112, 1953, 1962
TspGWI	ACGGA	2 cut(s)	857, 1008
TspMI	CCCGGG	2 cut(s)	214, 300
TspRI	CASTG	3 cut(s)	981, 1639, 1921
Van91I	CCANNNNNTGG	1 cut(s)	1825
VpaK11BI	GGWCC	3 cut(s)	372, 1930, 1964
XapI	RAATTY	4 cut(s)	331, 799, 1747, 1940
XbaI	TCTAGA	1 cut(s)	1895
XceI	RCATGY	2 cut(s)	1403, 1866
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1403
XmaI	CCCGGG	2 cut(s)	214, 300
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	2 cut(s)	353, 899
XspI	CTAG	2 cut(s)	1658, 1896
ZrmI	AGTACT	2 cut(s)	281, 998
Zsp2I	ATGCAT	2 cut(s)	140, 1531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.