Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8252843.1

Orthogroup ID

OG0003359

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 749

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8252843.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 728 bp

atgatccaaagcttaaactcgggtcgtcggatcctaacctacccggcggttcatccctgcgaagccatagctccggagacgcttctgacctcactcatcgctctcacccacagcatttgctcttacaaatccaaatgcatcgccagcaacaagcgaaacgctttggaagcaatccgccaaatcggagtgattcgggtttttttggaagagatccaggccgggccgccgggtcttcctgattcgaccgttttgagcttctcggagctccatttggctttccagaaggttcagtacttgctggaagactgtacccgggacgacgcccggctatggatgctgatgaattcggagcgggttgcgaaccagttccgggtcttgattcgggccatggcgacggctctcgatgttctgcctcttgatggcatccacgtggcagttgaggtgaaggagcaggtcgaattggtgatgaggcaagcgcggcgggtgaggttccaagttgacccggaagataagcgggtcgtcgaggcggttaagaaagttttgatcgggttcgagaaacgggtcgacccggataggagtgagctgaagcgggtacttgatcatgttgggattcggagatggagtaggtgcgagaaggaggtgagatttttggaatctgaaattgggttcgagaatctgagagaggtggggttgctgagcagcctgaaggggttgttgtgctactgccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010029 GO:0010119 GO:0010646 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1900140 GO:1901419 GO:1901564 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

243

Amino Acids

27.72

Weight (kDa)

8.68

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10560 AT1G60190
fragaria_vesca	FvH4_4g34620 FvH4_5g05140
malus_domestica	MD06G1177100.v1.1 MD13G1090900.v1.1 MD14G1183300.v1.1 MD16G1091300.v1.1
prunus_persica	Prupe.1G255000_v2.0.a1 Prupe.5G175800_v2.0.a1
pyrus_communis	pycom06g15720 pycom13g07890 pycom14g15220 pycom16g07800
rosa_chinensis	RchiOBHm_Chr4g0443981 RchiOBHm_Chr7g0193831
rosa_laevigata	RLG00000004242 RLG00000005870
rosa_multiflora	Rmu_co8252843.1_g000001 Rmu_sc0001436.1_g000032 Rmu_sc0027702.1_g000002 Rmu_sc0029481.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261790 Rroxscaffold_5G00384530
rosa_rugosa	Rorug04G0348700 Rorug07G0012400
rosa_samantha	Rh4AG409400 Rh4BG420500 Rh4CG434500 Rh4DG415500 Rh7AG139000 Rh7BG139200 Rh7CG142900 Rh7DG140500
rosa_wichuraiana	Rw4G035170 Rw7G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	564
AccII	CGCG	1 cut(s)	478
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	9 cut(s)	47, 175, 224, 352, 478, 481, 514, 527, 589
AclWI	GGATC	3 cut(s)	25, 38, 205
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	2 cut(s)	605, 725
AcvI	CACGTG	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	3 cut(s)	293, 310, 594
AfiI	CCNNNNNNNGG	3 cut(s)	330, 370, 419
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	645, 677
AluBI	AGCT	5 cut(s)	12, 71, 255, 265, 583
AluI	AGCT	5 cut(s)	12, 71, 255, 265, 583
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	25, 38, 205
Ama87I	CYCGRG	2 cut(s)	19, 312
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	3 cut(s)	216, 221, 384
ApeKI	GCWGC	1 cut(s)	699
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	2 cut(s)	221, 384
AsuC2I	CCSGG	9 cut(s)	44, 220, 228, 313, 314, 325, 371, 503, 569
AsuHPI	GGTGA	5 cut(s)	97, 454, 475, 496, 652
AvaI	CYCGRG	2 cut(s)	19, 312
BamHI	GGATCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	267
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbrPI	CACGTG	1 cut(s)	430
BbsI	GAAGAC	2 cut(s)	224, 309
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	711
BccI	CCATC	2 cut(s)	413, 612
BceAI	ACGGC	1 cut(s)	411
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	9 cut(s)	44, 220, 228, 313, 314, 325, 371, 503, 569
BcoDI	GTCTC	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	3 cut(s)	224, 479, 700
BlpI	GCTNAGC	1 cut(s)	695
BlsI	GCNGC	3 cut(s)	225, 480, 701
BmcAI	AGTACT	1 cut(s)	293
BmeT110I	CYCGRG	2 cut(s)	19, 312
BmgT120I	GGNCC	2 cut(s)	221, 384
BmiI	GGNNCC	2 cut(s)	32, 491
BmsI	GCATC	3 cut(s)	147, 324, 432
BpiI	GAAGAC	2 cut(s)	224, 309
Bpu1102I	GCTNAGC	1 cut(s)	695
BpuMI	CCSGG	9 cut(s)	44, 220, 228, 313, 314, 325, 371, 503, 569
BsaAI	YACGTR	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	312, 387
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	607, 637
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 370, 419
Bse1I	ACTGG	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	312, 387
BseGI	GGATG	3 cut(s)	52, 339, 423
BseLI	CCNNNNNNNGG	3 cut(s)	330, 370, 419
BseMII	CTCAG	2 cut(s)	668, 686
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	711
Bsh1236I	CGCG	1 cut(s)	478
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	218, 223, 386
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	2 cut(s)	19, 312
BsiSI	CCGG	9 cut(s)	44, 74, 219, 227, 313, 325, 370, 503, 569
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	330, 370, 419
BsmAI	GTCTC	1 cut(s)	71
BsmBI	CGTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	3 cut(s)	218, 223, 386
BsoBI	CYCGRG	2 cut(s)	19, 312
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	5 cut(s)	3, 30, 210, 543, 598
Bsp1720I	GCTNAGC	1 cut(s)	695
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	9 cut(s)	47, 175, 224, 352, 478, 481, 514, 527, 589
BspANI	GGCC	3 cut(s)	218, 223, 386
BspCNI	CTCAG	2 cut(s)	669, 687
BspEI	TCCGGA	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	32, 491
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	3 cut(s)	25, 38, 205
BsrBI	CCGCTC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	312, 387
BssMI	GATC	5 cut(s)	3, 30, 210, 543, 598
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	247, 308
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	145, 474
BstDEI	CTNAG	2 cut(s)	677, 695
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	3 cut(s)	52, 339, 423
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	5 cut(s)	6, 33, 213, 546, 601
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	5 cut(s)	3, 30, 210, 543, 598
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 167, 334, 478
BstNI	CCWGG	1 cut(s)	215
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	1 cut(s)	711
BstV2I	GAAGAC	2 cut(s)	224, 309
BstX2I	RGATCY	2 cut(s)	30, 210
BstYI	RGATCY	2 cut(s)	30, 210
BsuRI	GGCC	3 cut(s)	218, 223, 386
BtgI	CCRYGG	1 cut(s)	387
BtgZI	GCGATG	2 cut(s)	82, 124
BtsCI	GGATG	3 cut(s)	52, 339, 423
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	145, 474
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	221, 384
Cfr9I	CCCGGG	1 cut(s)	312
CseI	GACGC	2 cut(s)	88, 329
Csp6I	GTAC	3 cut(s)	292, 309, 593
CspCI	CAANNNNNGTGG	2 cut(s)	98, 133
CviAII	CATG	2 cut(s)	388, 602
CviQI	GTAC	3 cut(s)	292, 309, 593
DdeI	CTNAG	2 cut(s)	677, 695
DpnI	GATC	5 cut(s)	5, 32, 212, 545, 600
DpnII	GATC	5 cut(s)	3, 30, 210, 543, 598
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	605, 725
Eco72I	CACGTG	1 cut(s)	430
Eco88I	CYCGRG	2 cut(s)	19, 312
EcoICRI	GAGCTC	1 cut(s)	265
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	2 cut(s)	391, 605
FaiI	YATR	4 cut(s)	68, 331, 389, 603
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	2 cut(s)	387, 601
FauI	CCCGC	4 cut(s)	345, 474, 507, 582
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	3 cut(s)	224, 479, 700
FokI	GGATG	3 cut(s)	39, 346, 410
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	224, 479, 700
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	3 cut(s)	224, 479, 700
HaeIII	GGCC	3 cut(s)	218, 223, 386
HapII	CCGG	9 cut(s)	44, 74, 219, 227, 313, 325, 370, 503, 569
HgaI	GACGC	2 cut(s)	88, 329
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	391, 605
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	2 cut(s)	499, 565
HindII	GTYRAC	2 cut(s)	499, 565
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	6 cut(s)	190, 239, 379, 610, 653, 673
HpaII	CCGG	9 cut(s)	44, 74, 219, 227, 313, 325, 370, 503, 569
HphI	GGTGA	5 cut(s)	97, 454, 475, 496, 652
Hpy166II	GTNNAC	2 cut(s)	499, 565
Hpy188I	TCNGA	8 cut(s)	30, 87, 185, 262, 349, 615, 658, 678
Hpy188III	TCNNGA	8 cut(s)	74, 236, 280, 376, 401, 416, 553, 670
Hpy8I	GTNNAC	2 cut(s)	499, 565
Hpy99I	CGWCG	4 cut(s)	30, 323, 397, 524
HpyAV	CCTTC	4 cut(s)	277, 439, 628, 700
HpyCH4III	ACNGT	2 cut(s)	247, 308
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 167, 334, 478
HpyF3I	CTNAG	2 cut(s)	677, 695
HpySE526I	ACGT	1 cut(s)	429
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	391, 605
HspAI	GCGC	1 cut(s)	476
Kpn2I	TCCGGA	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	5 cut(s)	3, 30, 210, 543, 598
LmnI	GCTCC	5 cut(s)	76, 262, 270, 349, 448
Lsp1109I	GCAGC	1 cut(s)	711
LweI	GCATC	3 cut(s)	147, 324, 432
MaeII	ACGT	1 cut(s)	429
MalI	GATC	5 cut(s)	5, 32, 212, 545, 600
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	5 cut(s)	3, 30, 210, 543, 598
MboII	GAAGA	4 cut(s)	218, 224, 314, 518
MflI	RGATCY	2 cut(s)	30, 210
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	343, 458, 660
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	8 cut(s)	100, 423, 433, 462, 480, 517, 631, 676
Mph1103I	ATGCAT	1 cut(s)	140
MroI	TCCGGA	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	2 cut(s)	14, 531
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	9 cut(s)	44, 74, 219, 227, 313, 325, 370, 503, 569
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	4 cut(s)	144, 167, 334, 478
NciI	CCSGG	9 cut(s)	44, 220, 228, 313, 314, 325, 371, 503, 569
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	5 cut(s)	3, 30, 210, 543, 598
NlaIII	CATG	2 cut(s)	391, 605
NlaIV	GGNNCC	2 cut(s)	32, 491
NsiI	ATGCAT	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	6 cut(s)	190, 239, 379, 610, 653, 673
PkrI	GCNGC	3 cut(s)	225, 480, 701
PmaCI	CACGTG	1 cut(s)	430
PmlI	CACGTG	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	213
PspCI	CACGTG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	32, 491
PspPI	GGNCC	2 cut(s)	221, 384
PsuI	RGATCY	2 cut(s)	30, 210
RsaI	GTAC	3 cut(s)	293, 310, 594
RsaNI	GTAC	3 cut(s)	292, 309, 593
RseI	CAYNNNNRTG	1 cut(s)	428
SacI	GAGCTC	1 cut(s)	267
SalI	GTCGAC	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	14, 531
SatI	GCNGC	3 cut(s)	224, 479, 700
Sau3AI	GATC	5 cut(s)	3, 30, 210, 543, 598
Sau96I	GGNCC	2 cut(s)	221, 384
ScaI	AGTACT	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	3 cut(s)	147, 324, 432
SmaI	CCCGGG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	3 cut(s)	343, 458, 660
SsiI	CCGC	9 cut(s)	47, 175, 224, 352, 478, 481, 514, 527, 589
SstI	GAGCTC	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	247, 308
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	7 cut(s)	242, 402, 456, 522, 552, 564, 669
TasI	AATT	3 cut(s)	343, 458, 660
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	2 cut(s)	226, 481
TfiI	GAWTC	6 cut(s)	190, 239, 379, 610, 653, 673
Tru1I	TTAA	2 cut(s)	14, 531
Tru9I	TTAA	2 cut(s)	14, 531
TseI	GCWGC	1 cut(s)	699
TspDTI	ATGAA	2 cut(s)	41, 356
TspMI	CCCGGG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	343
XmaI	CCCGGG	1 cut(s)	312
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	365
ZrmI	AGTACT	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.