AT1G10670

ATP-citrate synthase alpha chain protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
3535288 .. 3538439
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10670.2

Sequence Viewer

Length: 1272 bp
ATGGCGAGGAAGAAGATCAGAGAGTATGACTCAAAGAGGTTGGTGAAGGAACATTTCAAAAGGCTTTCTGGCAAAGAGCTTCCTATCAGATCCGTTCAGATTAATGAAACAACTGATCTAAATGAGCTAGTTGAAAAGGAACCTTGGCTCTCGTCTGAGAAGCTGGTGGTGAAACCTGACATGTTGTTTGGAAAGCGTGGCAAGAGTGGTTTGGTTGCCTTGAAATTAGATTTTGCTGATGTTGCCACTTTTGTTAAAGAACGTTTGGGAAAAGAGGTAGAGATGAGTGGATGCAAAGGACCCATAACAACATTCATAGTTGAACCATTTGTTCCACACAATGAGGAGTATTATCTCAATGTTGTCTCGGATCGGCTTGGTTGCAGCATAAGCTTTTCTGAGTGTGGAGGAATTGAGATCGAGGAGAACTGGGACAAGGTCAAGACAATATTTTTACCAACAGGTGCTTCCCTGACACCTGAAATATGTGCACCTCTTGTCGCAACTCTTCCCTTAGAGATCAAAGCTGAAATTGAAGAATTTATCAAAGTCATTTTCACCCTATTCCAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTCACTCTAGTTGATGGAAGTCCTTATCCTCTGGATATGAGGGGTGAGCTTGATGATACTGCTGCCTTCAAAAACTTTAAAAAATGGGGCGACATTGAATTTCCTCTGCCATTTGGAAGAGTAATGAGTCCTACAGAAAGCTTTATCCACGGACTGGATGAGAAGACAAGTGCGTCTTTGAAGTTTACCGTTCTGAACCCCAAGGGACGGATTTGGACAATGGTAGCTGGTGGAGGAGCAAGTGTCATCTATGCGGATACGGTTGGAGATCTCGGGTATGCATCTGAACTTGGCAACTATGCTGAATACAGTGGAGCACCCAAAGAAGATGAGGTTTTGCAGTACGCCAGAGTCGTTATTGATTGTGCTACAGCAAACCCGGATGGAAAAAGCAGAGCCCTTGTCATCGGAGGCGGAATTGCCAACTTCACTGACGTTGCTGCTACTTTCAATGGCATAATCCGCGCTCTTAAAGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATATTTGTGAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGCGAGCCCTTGGAGATGATATCGGTGTCCCCATCGAGGTCTATGGCCCAGAAGCAACCATGACAGGTATCTGCAAGGAGGCAATCCAGTACATCACAGCAGCAGCATAA

Protein Analysis

423

Amino Acids

46.68

Weight (kDa)

5.39

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Citrate_synth_N PF24948 2 - 230 1.2e-72 ATP-citrate synthase ATP-grasp domain
ATP-grasp_2 PF08442 6 - 203 2.5e-16 ATP-grasp domain
Citrate_bind PF16114 241 - 417 1.2e-84 ATP citrate lyase citrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 775
AccB7I CCANNNNNTGG 1 cut(s) 757
AccII CGCG 1 cut(s) 1068
AciI CCGC 3 cut(s) 857, 1017, 1066
AclI AACGTT 1 cut(s) 262
AclWI GGATC 2 cut(s) 84, 378
AcsI RAATTY 2 cut(s) 539, 701
AfaI GTAC 2 cut(s) 947, 1253
AfiI CCNNNNNNNGG 3 cut(s) 757, 810, 1198
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 9 cut(s) 58, 134, 223, 323, 536, 673, 701, 784, 1054
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AluBI AGCT 9 cut(s) 79, 127, 163, 393, 527, 652, 744, 830, 1093
AluI AGCT 9 cut(s) 79, 127, 163, 393, 527, 652, 744, 830, 1093
Alw21I GWGCWC 2 cut(s) 493, 922
Alw26I GTCTC 1 cut(s) 370
Alw44I GTGCAC 1 cut(s) 489
AlwI GGATC 2 cut(s) 84, 378
Ama87I CYCGRG 1 cut(s) 875
AoxI GGCC 1 cut(s) 1207
ApaLI GTGCAC 1 cut(s) 489
ApeKI GCWGC 6 cut(s) 384, 665, 1043, 1100, 1262, 1265
ApoI RAATTY 2 cut(s) 539, 701
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AseI ATTAAT 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 602
AspLEI GCGC 1 cut(s) 1070
AspS9I GGNCC 3 cut(s) 299, 1133, 1208
AsuC2I CCSGG 1 cut(s) 983
AsuHPI GGTGA 4 cut(s) 55, 181, 550, 659
AvaI CYCGRG 1 cut(s) 875
AvaII GGWCC 2 cut(s) 299, 1133
BaeGI GKGCMC 1 cut(s) 493
BanII GRGCYC 2 cut(s) 1003, 1171
BbsI GAAGAC 1 cut(s) 773
Bbv12I GWGCWC 2 cut(s) 493, 922
BbvI GCAGC 4 cut(s) 396, 652, 1030, 1112
BccI CCATC 3 cut(s) 611, 980, 1202
BciVI GTATCC 1 cut(s) 853
BcnI CCSGG 1 cut(s) 983
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 2 cut(s) 128, 611
BfmI CTRYAG 2 cut(s) 735, 972
BfuI GTATCC 1 cut(s) 853
BglII AGATCT 2 cut(s) 571, 871
BisI GCNGC 6 cut(s) 385, 666, 1044, 1101, 1263, 1266
BlsI GCNGC 6 cut(s) 386, 667, 1045, 1102, 1264, 1267
Bme1390I CCNGG 1 cut(s) 983
Bme18I GGWCC 2 cut(s) 299, 1133
BmeT110I CYCGRG 1 cut(s) 875
BmgT120I GGNCC 3 cut(s) 299, 1133, 1208
BmiI GGNNCC 2 cut(s) 141, 301
BmrFI CCNGG 1 cut(s) 983
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 3 cut(s) 281, 893, 1098
BmuI ACTGGG 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 773
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpuMI CCSGG 1 cut(s) 983
BsaJI CCNNGG 4 cut(s) 143, 751, 804, 1171
BsaXI ACNNNNNCTCC 2 cut(s) 831, 861
Bsc4I CCNNNNNNNGG 3 cut(s) 757, 810, 1198
Bse1I ACTGG 3 cut(s) 434, 762, 1249
BseDI CCNNGG 4 cut(s) 143, 751, 804, 1171
BseGI GGATG 4 cut(s) 296, 766, 991, 1113
BseLI CCNNNNNNNGG 3 cut(s) 757, 810, 1198
BseMII CTCAG 2 cut(s) 147, 390
BseNI ACTGG 3 cut(s) 434, 762, 1249
BseRI GAGGAG 5 cut(s) 359, 437, 852, 1138, 1143
BseSI GKGCMC 1 cut(s) 493
BseXI GCAGC 4 cut(s) 396, 652, 1030, 1112
Bsh1236I CGCG 1 cut(s) 1068
BshFI GGCC 1 cut(s) 1209
BsiHKAI GWGCWC 2 cut(s) 493, 922
BsiHKCI CYCGRG 1 cut(s) 875
BsiSI CCGG 1 cut(s) 983
BslFI GGGAC 4 cut(s) 446, 822, 1164, 1175
BslI CCNNNNNNNGG 3 cut(s) 757, 810, 1198
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 4 cut(s) 446, 822, 1164, 1175
BsnI GGCC 1 cut(s) 1209
BsoBI CYCGRG 1 cut(s) 875
Bsp1286I GDGCHC 4 cut(s) 493, 922, 1003, 1171
Bsp143I GATC 8 cut(s) 15, 89, 115, 370, 417, 519, 571, 871
BspACI CCGC 3 cut(s) 857, 1017, 1066
BspANI GGCC 1 cut(s) 1209
BspCNI CTCAG 2 cut(s) 148, 391
BspFNI CGCG 1 cut(s) 1068
BspLI GGNNCC 2 cut(s) 141, 301
BspPI GGATC 2 cut(s) 84, 378
BsrI ACTGG 3 cut(s) 434, 762, 1249
BssECI CCNNGG 4 cut(s) 143, 751, 804, 1171
BssMI GATC 8 cut(s) 15, 89, 115, 370, 417, 519, 571, 871
BssT1I CCWWGG 3 cut(s) 143, 804, 1171
Bst4CI ACNGT 3 cut(s) 793, 865, 914
Bst6I CTCTTC 2 cut(s) 513, 715
BstC8I GCNNGC 1 cut(s) 1167
BstDEI CTNAG 3 cut(s) 156, 399, 514
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 4 cut(s) 296, 766, 991, 1113
BstFNI CGCG 1 cut(s) 1068
BstHHI GCGC 1 cut(s) 1070
BstKTI GATC 8 cut(s) 18, 92, 118, 373, 420, 522, 574, 874
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 8 cut(s) 15, 89, 115, 370, 417, 519, 571, 871
BstMWI GCNNNNNNNGC 3 cut(s) 242, 390, 1065
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 981
BstSFI CTRYAG 2 cut(s) 735, 972
BstSLI GKGCMC 1 cut(s) 493
BstUI CGCG 1 cut(s) 1068
BstV1I GCAGC 4 cut(s) 396, 652, 1030, 1112
BstV2I GAAGAC 1 cut(s) 773
BstX2I RGATCY 3 cut(s) 89, 571, 871
BstYI RGATCY 3 cut(s) 89, 571, 871
BsuI GTATCC 1 cut(s) 853
BsuRI GGCC 1 cut(s) 1209
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 4 cut(s) 296, 766, 991, 1113
BtsIMutI CAGTG 2 cut(s) 919, 1032
Cac8I GCNNGC 1 cut(s) 1167
CfoI GCGC 1 cut(s) 1070
Cfr13I GGNCC 3 cut(s) 299, 1133, 1208
CseI GACGC 1 cut(s) 765
Csp6I GTAC 2 cut(s) 946, 1252
CviAII CATG 2 cut(s) 181, 1222
CviQI GTAC 2 cut(s) 946, 1252
DdeI CTNAG 3 cut(s) 156, 399, 514
DpnI GATC 8 cut(s) 17, 91, 117, 372, 419, 521, 573, 873
DpnII GATC 8 cut(s) 15, 89, 115, 370, 417, 519, 571, 871
DraI TTTAAA 1 cut(s) 682
DrdI GACNNNNNNGTC 1 cut(s) 775
DseDI GACNNNNNNGTC 1 cut(s) 775
Eam1104I CTCTTC 2 cut(s) 513, 715
EarI CTCTTC 2 cut(s) 513, 715
EciI GGCGGA 1 cut(s) 1032
Eco130I CCWWGG 3 cut(s) 143, 804, 1171
Eco24I GRGCYC 2 cut(s) 1003, 1171
Eco32I GATATC 1 cut(s) 1183
Eco47I GGWCC 2 cut(s) 299, 1133
Eco88I CYCGRG 1 cut(s) 875
EcoO109I RGGNCCY 1 cut(s) 299
EcoRV GATATC 1 cut(s) 1183
EcoT14I CCWWGG 3 cut(s) 143, 804, 1171
EcoT22I ATGCAT 2 cut(s) 886, 1113
EcoT38I GRGCYC 2 cut(s) 1003, 1171
ErhI CCWWGG 3 cut(s) 143, 804, 1171
FaeI CATG 2 cut(s) 184, 1225
FalI AAGNNNNNCTT 2 cut(s) 763, 795
FaqI GGGAC 4 cut(s) 446, 822, 1164, 1175
FatI CATG 2 cut(s) 180, 1221
Fnu4HI GCNGC 6 cut(s) 385, 666, 1044, 1101, 1263, 1266
FokI GGATG 4 cut(s) 303, 773, 998, 1120
FriOI GRGCYC 2 cut(s) 1003, 1171
Fsp4HI GCNGC 6 cut(s) 385, 666, 1044, 1101, 1263, 1266
FspBI CTAG 2 cut(s) 128, 611
GlaI GCGC 1 cut(s) 1069
GluI GCNGC 6 cut(s) 385, 666, 1044, 1101, 1263, 1266
HaeIII GGCC 1 cut(s) 1209
HapII CCGG 1 cut(s) 983
HgaI GACGC 1 cut(s) 765
HhaI GCGC 1 cut(s) 1070
Hin1II CATG 2 cut(s) 184, 1225
Hin6I GCGC 1 cut(s) 1068
HinP1I GCGC 1 cut(s) 1068
HindIII AAGCTT 2 cut(s) 391, 742
HinfI GANTC 4 cut(s) 29, 598, 730, 954
HpaII CCGG 1 cut(s) 983
HphI GGTGA 4 cut(s) 55, 181, 550, 659
Hpy166II GTNNAC 2 cut(s) 491, 789
Hpy188I TCNGA 9 cut(s) 20, 89, 99, 157, 370, 400, 798, 889, 1013
Hpy188III TCNNGA 3 cut(s) 442, 575, 635
Hpy8I GTNNAC 2 cut(s) 491, 789
HpyAV CCTTC 2 cut(s) 40, 679
HpyCH4III ACNGT 3 cut(s) 793, 865, 914
HpyCH4IV ACGT 2 cut(s) 262, 1038
HpyCH4V TGCA 7 cut(s) 294, 384, 491, 884, 943, 1111, 1236
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 390, 1065
HpyF3I CTNAG 3 cut(s) 156, 399, 514
HpySE526I ACGT 2 cut(s) 262, 1038
Hsp92II CATG 2 cut(s) 184, 1225
HspAI GCGC 1 cut(s) 1068
Kzo9I GATC 8 cut(s) 15, 89, 115, 370, 417, 519, 571, 871
LmnI GCTCC 2 cut(s) 839, 917
Lsp1109I GCAGC 4 cut(s) 396, 652, 1030, 1112
LweI GCATC 3 cut(s) 281, 893, 1098
MaeI CTAG 2 cut(s) 128, 611
MaeII ACGT 2 cut(s) 262, 1038
MalI GATC 8 cut(s) 17, 91, 117, 372, 419, 521, 573, 873
MboI GATC 8 cut(s) 15, 89, 115, 370, 417, 519, 571, 871
MboII GAAGA 7 cut(s) 22, 25, 500, 548, 732, 778, 941
MflI RGATCY 3 cut(s) 89, 571, 871
MhlI GDGCHC 4 cut(s) 493, 922, 1003, 1171
MluCI AATT 6 cut(s) 224, 411, 531, 539, 701, 1020
MlyI GAGTC 3 cut(s) 23, 739, 963
MmeI TCCRAC 1 cut(s) 847
Mph1103I ATGCAT 2 cut(s) 886, 1113
MroXI GAANNNNTTC 1 cut(s) 602
MseI TTAA 4 cut(s) 102, 255, 681, 1074
MspI CCGG 1 cut(s) 983
MspR9I CCNGG 1 cut(s) 983
MvnI CGCG 1 cut(s) 1068
MwoI GCNNNNNNNGC 3 cut(s) 242, 390, 1065
NciI CCSGG 1 cut(s) 983
NdeII GATC 8 cut(s) 15, 89, 115, 370, 417, 519, 571, 871
NlaIII CATG 2 cut(s) 184, 1225
NlaIV GGNNCC 2 cut(s) 141, 301
NsiI ATGCAT 2 cut(s) 886, 1113
NspI RCATGY 1 cut(s) 184
PciI ACATGT 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 602
PfeI GAWTC 1 cut(s) 598
PflFI GACNNNGTC 1 cut(s) 437
PflMI CCANNNNNTGG 1 cut(s) 757
PkrI GCNGC 6 cut(s) 386, 667, 1045, 1102, 1264, 1267
PleI GAGTC 3 cut(s) 23, 738, 962
PpsI GAGTC 3 cut(s) 23, 738, 962
PpuMI RGGWCCY 1 cut(s) 299
PscI ACATGT 1 cut(s) 180
PshBI ATTAAT 1 cut(s) 102
Psp1406I AACGTT 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 299
PspN4I GGNNCC 2 cut(s) 141, 301
PspPI GGNCC 3 cut(s) 299, 1133, 1208
PspPPI RGGWCCY 1 cut(s) 299
PsuI RGATCY 3 cut(s) 89, 571, 871
PsyI GACNNNGTC 1 cut(s) 437
RsaI GTAC 2 cut(s) 947, 1253
RsaNI GTAC 2 cut(s) 946, 1252
SaqAI TTAA 4 cut(s) 102, 255, 681, 1074
SatI GCNGC 6 cut(s) 385, 666, 1044, 1101, 1263, 1266
Sau3AI GATC 8 cut(s) 15, 89, 115, 370, 417, 519, 571, 871
Sau96I GGNCC 3 cut(s) 299, 1133, 1208
SchI GAGTC 3 cut(s) 23, 739, 963
ScrFI CCNGG 1 cut(s) 983
SduI GDGCHC 4 cut(s) 493, 922, 1003, 1171
SfaNI GCATC 3 cut(s) 281, 893, 1098
SfcI CTRYAG 2 cut(s) 735, 972
SinI GGWCC 2 cut(s) 299, 1133
Sse9I AATT 6 cut(s) 224, 411, 531, 539, 701, 1020
SsiI CCGC 3 cut(s) 857, 1017, 1066
SspI AATATT 1 cut(s) 450
SspMI CTAG 2 cut(s) 128, 611
StyD4I CCNGG 1 cut(s) 981
StyI CCWWGG 3 cut(s) 143, 804, 1171
TaaI ACNGT 3 cut(s) 793, 865, 914
TaiI ACGT 2 cut(s) 265, 1041
TaqI TCGA 2 cut(s) 420, 1197
TasI AATT 6 cut(s) 224, 411, 531, 539, 701, 1020
TatI WGTACW 1 cut(s) 1251
TfiI GAWTC 1 cut(s) 598
Tru1I TTAA 4 cut(s) 102, 255, 681, 1074
Tru9I TTAA 4 cut(s) 102, 255, 681, 1074
TscAI CASTG 2 cut(s) 919, 1039
TseI GCWGC 6 cut(s) 384, 665, 1043, 1100, 1262, 1265
TspDTI ATGAA 3 cut(s) 120, 304, 611
TspGWI ACGGA 3 cut(s) 82, 768, 826
TspRI CASTG 2 cut(s) 919, 1039
Tth111I GACNNNGTC 1 cut(s) 437
Van91I CCANNNNNTGG 1 cut(s) 757
VneI GTGCAC 1 cut(s) 489
VpaK11BI GGWCC 2 cut(s) 299, 1133
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 2 cut(s) 539, 701
XceI RCATGY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 2 cut(s) 128, 611
Zsp2I ATGCAT 2 cut(s) 886, 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.