Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Forward (+)

29355234 .. 29378632

Gene Structure 23399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGTTAAAATTACCGAATCAACTGATTTCAATGAGCTACTTGAGAAGGAGACTTGGCTCTCTACTTCCAAGTTGGTTGTCAAGCCTGACATGTTGTTTGGAAAGCGTGGGAAGAGTGGTTTGGTTGCCTTGAACCTGGATTTCGCCCAAGTCGTCACCTTTGTGAAGGAGCGCCTAGGCAAAGAGGTTGAGATGGGTGGCTGCAAAGGACCCATCACAACATTCATTGTCGAGCCCTTCATTCCCCACAATGAAGAGTTTTATATTAACATCGTCTCAGATAGACTTGGGAATAGCATAAGCTTCTCAGAGTGTGGAGGAATTGACATTGAGGAGAACTGGGATAAGGTCAAGACCATATTTGTCCCAACGGGAGCTTCCCTTACACCAGATGTATCTGCTCCACTTGTTGCAACCCTTCCCTTGGAGATTAAGAGCGAAATTGAGGACTTTATCAAGTCCGTATTTGCTCTATTTCAAGATCTCGACTTCACTTTTCTGGAGATGAATCCTTTTGCATTGGTTGATGGAAAGCCATATCCTTTGGATATGAGAGGCGAGCTGGATGACACTGCTGCTTTCAAGAACTTCAAAAATCGAGACGGCCATGGGGCACCACAGGGCGGGGCGGCGACGAAGGGTCTGATGGAGGAGATGAAGCCGTGTAGGGCATCAATAGACGAGAGTGAGTTCCTAGATCGGGTCTTCTTCTTTCTCGTTCACAACGCCGTCGTCATAGTTGAAGGAGAAGATCGACCCTCTCTCTTCTCTTACTATGGGCACCCAGCTCTCCATCTCTCTTACTCTGGGCAACTAGCTCTCCATCTCTCTTTCTCTGGGCACAATCTCTCTCGCTCACTTGCTTGCACAGTGCAGCGTGCAAGCAGCACCACCACCCTTTCAACACAGCGTCCTACCATCACAGCTGATGACAACCGCTGGTCCTCCCAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

318

Amino Acids

35.28

Weight (kDa)

4.98

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synth_N	PF24948	1 - 196	1.5e-65	ATP-citrate synthase ATP-grasp domain
ATP-grasp_2	PF08442	10 - 173	6.6e-16	ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	613, 780
AciI	CCGC	3 cut(s)	624, 629, 937
AcoI	YGGCCR	1 cut(s)	604
AfiI	CCNNNNNNNGG	3 cut(s)	424, 623, 700
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	7 cut(s)	31, 133, 479, 583, 592, 743, 903
AhdI	GACNNNNNGTC	1 cut(s)	639
AjnI	CCWGG	1 cut(s)	135
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 361, 393
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	7 cut(s)	37, 303, 377, 562, 788, 818, 926
AluI	AGCT	7 cut(s)	37, 303, 377, 562, 788, 818, 926
Alw26I	GTCTC	3 cut(s)	44, 280, 594
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	4 cut(s)	201, 575, 874, 885
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspA2I	CCTAGG	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	2 cut(s)	209, 942
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	2 cut(s)	209, 942
AvrII	CCTAGG	1 cut(s)	175
BaeGI	GKGCMC	3 cut(s)	616, 783, 843
BanI	GGYRCC	2 cut(s)	613, 780
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	697
BbvI	GCAGC	4 cut(s)	188, 562, 886, 897
BccI	CCATC	7 cut(s)	187, 221, 521, 640, 801, 831, 926
BceAI	ACGGC	3 cut(s)	619, 646, 713
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	3 cut(s)	44, 280, 594
BfaI	CTAG	3 cut(s)	176, 695, 815
BfoI	RGCGCY	1 cut(s)	175
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	5 cut(s)	202, 576, 630, 875, 886
BlnI	CCTAGG	1 cut(s)	175
BlsI	GCNGC	5 cut(s)	203, 577, 631, 876, 887
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	209, 942
BmeRI	GACNNNNNGTC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	209, 942
BmiI	GGNNCC	3 cut(s)	211, 615, 782
BmrFI	CCNGG	1 cut(s)	137
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	680
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	697
BpmI	CTGGAG	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	175, 423, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 623, 700
Bse1I	ACTGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	3 cut(s)	175, 423, 607
BseGI	GGATG	1 cut(s)	571
BseLI	CCNNNNNNNGG	3 cut(s)	424, 623, 700
BseMII	CTCAG	2 cut(s)	291, 321
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	2 cut(s)	347, 665
BseSI	GKGCMC	3 cut(s)	616, 783, 843
BseXI	GCAGC	4 cut(s)	188, 562, 886, 897
BseYI	CCCAGC	1 cut(s)	784
BsgI	GTGCAG	1 cut(s)	893
BshFI	GGCC	1 cut(s)	606
BshNI	GGYRCC	2 cut(s)	613, 780
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	424, 623, 700
BsmAI	GTCTC	3 cut(s)	44, 280, 594
BsmBI	CGTCTC	2 cut(s)	280, 594
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	606
Bsp1286I	GDGCHC	4 cut(s)	237, 616, 783, 843
Bsp143I	GATC	3 cut(s)	481, 697, 751
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	3 cut(s)	624, 629, 937
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	2 cut(s)	290, 320
BspLI	GGNNCC	3 cut(s)	211, 615, 782
BspT107I	GGYRCC	2 cut(s)	613, 780
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	175, 423, 607
BssMI	GATC	3 cut(s)	481, 697, 751
BssT1I	CCWWGG	3 cut(s)	175, 423, 607
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	871
Bst6I	CTCTTC	3 cut(s)	107, 249, 770
BstC8I	GCNNGC	4 cut(s)	560, 865, 879, 883
BstDEI	CTNAG	2 cut(s)	277, 307
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	571
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	484, 700, 754
BstMAI	GTCTC	3 cut(s)	44, 280, 594
BstMBI	GATC	3 cut(s)	481, 697, 751
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	135
BstSLI	GKGCMC	3 cut(s)	616, 783, 843
BstV1I	GCAGC	4 cut(s)	188, 562, 886, 897
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	607
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	570, 876
Cac8I	GCNNGC	4 cut(s)	560, 865, 879, 883
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	209, 942
CseI	GACGC	1 cut(s)	899
CviAII	CATG	2 cut(s)	91, 608
DdeI	CTNAG	2 cut(s)	277, 307
DpnI	GATC	3 cut(s)	483, 699, 753
DpnII	GATC	3 cut(s)	481, 697, 751
DriI	GACNNNNNGTC	1 cut(s)	639
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	3 cut(s)	107, 249, 770
Eam1105I	GACNNNNNGTC	1 cut(s)	639
EarI	CTCTTC	3 cut(s)	107, 249, 770
Eco130I	CCWWGG	3 cut(s)	175, 423, 607
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	209, 942
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	3 cut(s)	175, 423, 607
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	3 cut(s)	175, 423, 607
Esp3I	CGTCTC	2 cut(s)	280, 594
FaeI	CATG	2 cut(s)	94, 611
FaiI	YATR	9 cut(s)	92, 264, 299, 359, 538, 551, 609, 737, 777
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	90, 607
FauI	CCCGC	1 cut(s)	617
Fnu4HI	GCNGC	5 cut(s)	202, 576, 630, 875, 886
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	5 cut(s)	202, 576, 630, 875, 886
FspBI	CTAG	3 cut(s)	176, 695, 815
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	5 cut(s)	202, 576, 630, 875, 886
GsaI	CCCAGC	1 cut(s)	788
GsuI	CTGGAG	1 cut(s)	521
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	606
HgaI	GACGC	1 cut(s)	899
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	94, 611
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	2 cut(s)	17, 508
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	3 cut(s)	280, 310, 645
Hpy188III	TCNNGA	6 cut(s)	352, 479, 485, 500, 583, 599
Hpy8I	GTNNAC	1 cut(s)	721
Hpy99I	CGWCG	2 cut(s)	637, 734
HpyAV	CCTTC	6 cut(s)	40, 160, 247, 428, 631, 737
HpyCH4III	ACNGT	1 cut(s)	871
HpyCH4V	TGCA	6 cut(s)	204, 413, 518, 867, 874, 881
HpyF3I	CTNAG	2 cut(s)	277, 307
Hsp92II	CATG	2 cut(s)	94, 611
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	481, 697, 751
LmnI	GCTCC	3 cut(s)	169, 374, 406
Lsp1109I	GCAGC	4 cut(s)	188, 562, 886, 897
LweI	GCATC	1 cut(s)	680
MaeI	CTAG	3 cut(s)	176, 695, 815
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	3 cut(s)	483, 699, 753
MboI	GATC	3 cut(s)	481, 697, 751
MboII	GAAGA	6 cut(s)	124, 266, 697, 700, 757, 761
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	4 cut(s)	237, 616, 783, 843
MluCI	AATT	3 cut(s)	9, 321, 441
MnlI	CCTC	8 cut(s)	178, 311, 325, 439, 548, 643, 769, 955
MseI	TTAA	3 cut(s)	6, 267, 432
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	926, 939
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	3 cut(s)	481, 697, 751
NlaIII	CATG	2 cut(s)	94, 611
NlaIV	GGNNCC	3 cut(s)	211, 615, 782
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	161
PciI	ACATGT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	17, 508
PkrI	GCNGC	5 cut(s)	203, 577, 631, 876, 887
PpuMI	RGGWCCY	1 cut(s)	209
PscI	ACATGT	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	211, 615, 782
PspPI	GGNCC	2 cut(s)	209, 942
PspPPI	RGGWCCY	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	481
PvuII	CAGCTG	1 cut(s)	926
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	6, 267, 432
SatI	GCNGC	5 cut(s)	202, 576, 630, 875, 886
Sau3AI	GATC	3 cut(s)	481, 697, 751
Sau96I	GGNCC	2 cut(s)	209, 942
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	4 cut(s)	237, 616, 783, 843
SfaNI	GCATC	1 cut(s)	680
SinI	GGWCC	2 cut(s)	209, 942
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	3 cut(s)	9, 321, 441
SsiI	CCGC	3 cut(s)	624, 629, 937
SspMI	CTAG	3 cut(s)	176, 695, 815
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	3 cut(s)	175, 423, 607
TaaI	ACNGT	1 cut(s)	871
TaqI	TCGA	4 cut(s)	231, 486, 598, 754
TasI	AATT	3 cut(s)	9, 321, 441
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	2 cut(s)	17, 508
Tru1I	TTAA	3 cut(s)	6, 267, 432
Tru9I	TTAA	3 cut(s)	6, 267, 432
TscAI	CASTG	2 cut(s)	577, 876
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	4 cut(s)	201, 575, 874, 885
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	5 cut(s)	214, 229, 267, 521, 671
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	2 cut(s)	577, 876
VpaK11BI	GGWCC	2 cut(s)	209, 942
XceI	RCATGY	1 cut(s)	94
XmaJI	CCTAGG	1 cut(s)	175
XspI	CTAG	3 cut(s)	176, 695, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.