Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Forward (+)

51107116 .. 51136747

Gene Structure 29632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0337500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGGAGCAATTCGTACTCAGAGTCCCACCTTCAGTTGCAGAGAGATTAGATCATCTTCTCAGCGAGAATGCTTCTTCAGACGACAAGTCGTTGGATTTGTCTTTCGAAGAGGATGGCCGGAGTGGAACATTTGTAATTGGCAATGACCGGTTCCCTGCATCGCTCTTGGATCTTCCTACTGTTGTGGAATCCTACAAAACGTATGATGATAGTGTGTTAATTAAGACTGCAGATATTGGTCAGATGATTATGGTTAGAGATCCAAATGATCCTGCTCCAGATACAGTTGAGTACAGGCATGGTCTCACCCCTCCGATGAGGGATGCTCGAAAGCGAAGATTTCGCAGGGAGCCTGATCTAAATCCCGAGCTTGTCCAGCGTGTTGAGCAAGATCTGCTGAACATTAGTGCTGGTGGACCAGCTGACAATGTGGATATTGAAGTAGCTGAGCAAGAGAAAAATCGAGATGGCAAGGCTGGTAATACAAGTAAAAACCCTGCACCAGCACCTGAATCAAAAAATGATATTCCTGAGGCTGCTACAAACACAGGGGAGCCTGATGGAGAGCCTGATAGAAGTGATTCGGATGAATCTGACGATTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

203

Amino Acids

22.4

Weight (kDa)

4.32

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAFII55_N	PF04658	1 - 132	1.7e-32	TAFII55 protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	180, 257, 266
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	2 cut(s)	18, 63
AfaI	GTAC	2 cut(s)	18, 296
AgeI	ACCGGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	443, 606
AhdI	GACNNNNNGTC	1 cut(s)	88
AluBI	AGCT	3 cut(s)	373, 425, 449
AluI	AGCT	3 cut(s)	373, 425, 449
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	3 cut(s)	180, 257, 266
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	539
AsiGI	ACCGGT	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	3 cut(s)	110, 464, 557
BcoDI	GTCTC	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	231
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	1 cut(s)	540
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	419
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	3 cut(s)	155, 354, 558
BmsI	GCATC	2 cut(s)	170, 316
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
BpmI	CTGGAG	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	363
BseGI	GGATG	3 cut(s)	121, 331, 595
BseJI	GATNNNNATC	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	4 cut(s)	34, 76, 441, 525
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	120
BshTI	ACCGGT	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	121, 151
BslFI	GGGAC	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	368
Bsp119I	TTCGAA	1 cut(s)	108
Bsp143I	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
Bsp1720I	GCTNAGC	1 cut(s)	450
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	4 cut(s)	33, 75, 442, 526
BspLI	GGNNCC	3 cut(s)	155, 354, 558
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	3 cut(s)	180, 257, 266
BspT104I	TTCGAA	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssMI	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
Bst4CI	ACNGT	2 cut(s)	184, 289
Bst6I	CTCTTC	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstBI	TTCGAA	1 cut(s)	108
BstDEI	CTNAG	4 cut(s)	20, 62, 450, 534
BstF5I	GGATG	3 cut(s)	121, 331, 595
BstKTI	GATC	6 cut(s)	55, 175, 265, 274, 361, 397
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	379, 388, 397
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	526
BstX2I	RGATCY	3 cut(s)	172, 262, 394
BstYI	RGATCY	3 cut(s)	172, 262, 394
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	121, 331, 595
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	17, 295
CspAI	ACCGGT	1 cut(s)	150
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	9 cut(s)	120, 355, 373, 425, 449, 479, 539, 559, 571
CviKI_1	RGCY	9 cut(s)	120, 355, 373, 425, 449, 479, 539, 559, 571
CviQI	GTAC	2 cut(s)	17, 295
DdeI	CTNAG	4 cut(s)	20, 62, 450, 534
DpnI	GATC	6 cut(s)	54, 174, 264, 273, 360, 396
DpnII	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
DriI	GACNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	105
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	18, 63
Eco81I	CCTNAGG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	368
FaeI	CATG	1 cut(s)	305
FaiI	YATR	3 cut(s)	207, 254, 303
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	3 cut(s)	128, 338, 602
Fsp4HI	GCNGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	2 cut(s)	121, 151
Hin1II	CATG	1 cut(s)	305
HinfI	GANTC	6 cut(s)	24, 191, 515, 584, 593, 602
HpaII	CCGG	2 cut(s)	121, 151
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	6 cut(s)	23, 82, 246, 318, 589, 598
Hpy188III	TCNNGA	4 cut(s)	281, 368, 467, 533
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	2 cut(s)	184, 289
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	41, 161, 233, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	379, 388, 397
HpyF3I	CTNAG	4 cut(s)	20, 62, 450, 534
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
LmnI	GCTCC	4 cut(s)	7, 283, 352, 556
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	2 cut(s)	170, 316
MaeII	ACGT	1 cut(s)	203
MalI	GATC	6 cut(s)	54, 174, 264, 273, 360, 396
MboI	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
MboII	GAAGA	5 cut(s)	50, 69, 122, 167, 351
MflI	RGATCY	3 cut(s)	172, 262, 394
MluCI	AATT	4 cut(s)	11, 138, 222, 606
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	106, 315, 324, 529
MroXI	GAANNNNTTC	1 cut(s)	583
MseI	TTAA	2 cut(s)	221, 225
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	121, 151
Mva1269I	GAATGC	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	379, 388, 397
NdeII	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	3 cut(s)	155, 354, 558
NspV	TTCGAA	1 cut(s)	108
PacI	TTAATTAA	1 cut(s)	225
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	583
PfeI	GAWTC	5 cut(s)	191, 515, 584, 593, 602
PinAI	ACCGGT	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	155, 354, 558
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	3 cut(s)	172, 262, 394
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	18, 296
RsaNI	GTAC	2 cut(s)	17, 295
SaqAI	TTAA	2 cut(s)	221, 225
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	6 cut(s)	52, 172, 262, 271, 358, 394
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	33
SetI	ASST	6 cut(s)	34, 206, 375, 427, 451, 514
SfaNI	GCATC	2 cut(s)	170, 316
SfcI	CTRYAG	1 cut(s)	231
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	4 cut(s)	11, 138, 222, 606
TaaI	ACNGT	2 cut(s)	184, 289
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	108, 331, 466
TasI	AATT	4 cut(s)	11, 138, 222, 606
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	5 cut(s)	191, 515, 584, 593, 602
Tru1I	TTAA	2 cut(s)	221, 225
Tru9I	TTAA	2 cut(s)	221, 225
TseI	GCWGC	1 cut(s)	539
TspDTI	ATGAA	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.