RLG00000018726

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002735
Physical Location & Seq
Reverse (-)
34596311 .. 34597301
991 bp
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UTR
Exon/CDS
Intron
RLM00000018726

Sequence Viewer

Length: 480 bp
ATGTTGCATGCTGAACTTGGAAGGCTGAGGCTGAGCTTTCGAGCTCGATTTCCGAGACGATGCGGTAGAAGAAGAAGAAGAAGAATTGGGTTTCTTTCTAGGAGCCATGAATTGGATGCTGGATTTGAAAGGTGGAAACCCCCAAATTTGAAGTGGATTAGAAGAGATGAGATTGGGGAAAGAAGGAGAGAGATTGATGAGTCTTGTTCGAATGAAGAATTAGAAGGCGGCCTCGATAAGGAAGAAGGCCACAGAGGTTGGCACCCGAGTCGACGCTGTCGAGACGGCCATGAAGCACCACAGGGCGGGGCGGCGGCAGAGGGTCCGATGGAGGAGATGAAGCCGTGTAGGGCGGCGGCGGAGGAGAGCGGGTTCCTAGATCGGGTCTTCTTCTTTCTCGTTCACAACGCCATCGTCGTAGTTGAAGGAGAAGGTCGGGTCTTCTTCTTTCTCGTTCACAACACCATCACTGTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.52

Weight (kDa)

9.19

Isoelectric Point (pI)

76.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 261
AccB7I CCANNNNNTGG 1 cut(s) 112
AccBSI CCGCTC 1 cut(s) 369
AccI GTMKAC 1 cut(s) 271
AciI CCGC 9 cut(s) 63, 228, 306, 311, 314, 353, 356, 359, 369
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 145
AfiI CCNNNNNNNGG 4 cut(s) 112, 238, 305, 382
AgsI TTSAA 3 cut(s) 128, 151, 425
AloI GAACNNNNNNTCC 2 cut(s) 356, 388
AluBI AGCT 2 cut(s) 36, 44
AluI AGCT 2 cut(s) 36, 44
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 49, 276
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 3 cut(s) 229, 247, 286
ApoI RAATTY 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 323
AsuII TTCGAA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 379, 433
Bbv12I GWGCWC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 26
BccI CCATC 3 cut(s) 322, 419, 473
BceAI ACGGC 2 cut(s) 301, 328
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BcoDI GTCTC 2 cut(s) 49, 276
BfaI CTAG 2 cut(s) 99, 377
BisI GCNGC 5 cut(s) 229, 312, 315, 354, 357
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 5 cut(s) 230, 313, 316, 355, 358
Bme18I GGWCC 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 4 cut(s) 104, 263, 324, 374
BmsI GCATC 2 cut(s) 50, 106
BpiI GAAGAC 2 cut(s) 379, 433
Bpu10I CCTNAGC 1 cut(s) 26
Bpu1102I GCTNAGC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 238, 305, 382
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 4 cut(s) 112, 238, 305, 382
BseMII CTCAG 2 cut(s) 17, 23
BseRI GAGGAG 2 cut(s) 347, 377
BshFI GGCC 3 cut(s) 231, 249, 288
BshNI GGYRCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 265
BslI CCNNNNNNNGG 4 cut(s) 112, 238, 305, 382
BsmAI GTCTC 2 cut(s) 49, 276
BsmBI CGTCTC 2 cut(s) 49, 276
BsnI GGCC 3 cut(s) 231, 249, 288
BsoBI CYCGRG 1 cut(s) 265
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 379
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 9 cut(s) 63, 228, 306, 311, 314, 353, 356, 359, 369
BspANI GGCC 3 cut(s) 231, 249, 288
BspCNI CTCAG 2 cut(s) 18, 24
BspLI GGNNCC 4 cut(s) 104, 263, 324, 374
BspT104I TTCGAA 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 369
BssMI GATC 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 26, 32
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 49, 276
BstMBI GATC 1 cut(s) 379
BstNSI RCATGY 1 cut(s) 11
BstV2I GAAGAC 2 cut(s) 379, 433
BsuRI GGCC 3 cut(s) 231, 249, 288
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 282
CspCI CAANNNNNGTGG 2 cut(s) 239, 274
CviAII CATG 3 cut(s) 8, 107, 290
CviJI RGCY 9 cut(s) 25, 31, 36, 44, 105, 231, 249, 288, 343
CviKI_1 RGCY 9 cut(s) 25, 31, 36, 44, 105, 231, 249, 288, 343
DdeI CTNAG 2 cut(s) 26, 32
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 46
Esp3I CGTCTC 2 cut(s) 49, 276
FaeI CATG 3 cut(s) 11, 110, 293
FaiI YATR 3 cut(s) 9, 108, 291
FatI CATG 3 cut(s) 7, 106, 289
FauI CCCGC 2 cut(s) 299, 362
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 5 cut(s) 229, 312, 315, 354, 357
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 5 cut(s) 229, 312, 315, 354, 357
FspBI CTAG 2 cut(s) 99, 377
GluI GCNGC 5 cut(s) 229, 312, 315, 354, 357
HaeIII GGCC 3 cut(s) 231, 249, 288
HgaI GACGC 1 cut(s) 282
Hin1II CATG 3 cut(s) 11, 110, 293
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
HinfI GANTC 2 cut(s) 200, 268
Hpy166II GTNNAC 3 cut(s) 272, 403, 457
Hpy188I TCNGA 3 cut(s) 54, 327, 479
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 3 cut(s) 272, 403, 457
Hpy99I CGWCG 2 cut(s) 276, 419
HpyAV CCTTC 6 cut(s) 15, 177, 218, 239, 419, 425
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4V TGCA 1 cut(s) 7
HpyF3I CTNAG 2 cut(s) 26, 32
Hsp92II CATG 3 cut(s) 11, 110, 293
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 2 cut(s) 105, 287
LweI GCATC 2 cut(s) 50, 106
MaeI CTAG 2 cut(s) 99, 377
MalI GATC 1 cut(s) 381
MbiI CCGCTC 1 cut(s) 369
MboI GATC 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 4 cut(s) 84, 110, 145, 218
MlyI GAGTC 2 cut(s) 209, 277
MnlI CCTC 6 cut(s) 21, 242, 248, 313, 325, 355
NdeII GATC 1 cut(s) 379
NlaIII CATG 3 cut(s) 11, 110, 293
NlaIV GGNNCC 4 cut(s) 104, 263, 324, 374
NspI RCATGY 1 cut(s) 11
NspV TTCGAA 1 cut(s) 209
PaeI GCATGC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 2 cut(s) 277, 414
PflFI GACNNNGTC 1 cut(s) 276
PflMI CCANNNNNTGG 1 cut(s) 112
PkrI GCNGC 5 cut(s) 230, 313, 316, 355, 358
PleI GAGTC 2 cut(s) 208, 276
PpsI GAGTC 2 cut(s) 208, 276
Psp124BI GAGCTC 1 cut(s) 46
PspN4I GGNNCC 4 cut(s) 104, 263, 324, 374
PspPI GGNCC 1 cut(s) 323
PsyI GACNNNGTC 1 cut(s) 276
SacI GAGCTC 1 cut(s) 46
SalI GTCGAC 1 cut(s) 270
SatI GCNGC 5 cut(s) 229, 312, 315, 354, 357
Sau3AI GATC 1 cut(s) 379
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 2 cut(s) 209, 277
SduI GDGCHC 1 cut(s) 46
SetI ASST 5 cut(s) 38, 46, 134, 259, 436
SfaNI GCATC 2 cut(s) 50, 106
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 1 cut(s) 323
SphI GCATGC 1 cut(s) 11
Sse9I AATT 4 cut(s) 84, 110, 145, 218
SsiI CCGC 9 cut(s) 63, 228, 306, 311, 314, 353, 356, 359, 369
SspMI CTAG 2 cut(s) 99, 377
SstI GAGCTC 1 cut(s) 46
TaaI ACNGT 1 cut(s) 472
TaqI TCGA 6 cut(s) 40, 46, 209, 234, 271, 280
TasI AATT 4 cut(s) 84, 110, 145, 218
TauI GCSGC 5 cut(s) 231, 314, 317, 356, 359
TscAI CASTG 1 cut(s) 475
TspDTI ATGAA 4 cut(s) 123, 228, 306, 353
TspRI CASTG 1 cut(s) 475
Tth111I GACNNNGTC 1 cut(s) 276
Van91I CCANNNNNTGG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 323
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 145
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 2 cut(s) 99, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.