Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Forward (+)

71855106 .. 71855692

Gene Structure 587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00051200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTACGTCTCCACCATCTGCTCTACCATCGACGTCATCGCGGTCTCCGTCGAGTGCAGCCTCTTCCCGACCCGGCCCATACCCACTTGCTATGAGGACTCCGGGCCTCTCTCCAATGGGTCGCCACCTATGCGAACGGAACCAAGTAGGATCAATGGCTAAACGAAAAGATCATTTGAATGGAGTGGGGAGGAGATATGTGGAGGAGCCGAAGAAAAGTGGTGGAAGAGTCGGGGATTTGGGGCTTAGGGTTGTGAGGAGCGGAAGAGGCGGTGTTGGGGGGGTTTTGAGAGTTCTAGGTGTGCTTGAACTTGGAAAGCTAAGGCTGAGCTTTCAAGTTCGATTTCCGAGACGAAGCCGTGAAAGAAGAAGAATTGGGTTTCTTTCTAGGAGCCATGAATTGGAAGCAGGATTTAAAGGTGGAAACCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.69

Weight (kDa)

11.85

Isoelectric Point (pI)

71.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccBSI	CCGCTC	1 cut(s)	264
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	43, 264, 273
AclWI	GGATC	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	181, 311, 338
AluBI	AGCT	2 cut(s)	322, 333
AluI	AGCT	2 cut(s)	322, 333
Alw26I	GTCTC	3 cut(s)	15, 51, 346
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	2 cut(s)	76, 106
ApeKI	GCWGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	77, 106
AsuC2I	CCSGG	2 cut(s)	75, 105
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	25, 37
BceAI	ACGGC	1 cut(s)	345
BcnI	CCSGG	2 cut(s)	75, 105
BcoDI	GTCTC	3 cut(s)	15, 51, 346
BfaI	CTAG	2 cut(s)	299, 390
BisI	GCNGC	1 cut(s)	60
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	75, 105
BmgT120I	GGNCC	2 cut(s)	77, 106
BmiI	GGNNCC	3 cut(s)	143, 210, 395
BmrFI	CCNGG	2 cut(s)	75, 105
Bpu10I	CCTNAGC	2 cut(s)	248, 323
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	75, 105
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	51
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	3 cut(s)	208, 221, 274
BseXI	GCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	78, 108
BsiSI	CCGG	2 cut(s)	75, 104
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	3 cut(s)	15, 51, 346
BsmBI	CGTCTC	2 cut(s)	15, 346
BsnI	GGCC	2 cut(s)	78, 108
Bso31I	GGTCTC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	152, 172
Bsp1720I	GCTNAGC	1 cut(s)	329
BspACI	CCGC	3 cut(s)	43, 264, 273
BspANI	GGCC	2 cut(s)	78, 108
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	3 cut(s)	143, 210, 395
BspPI	GGATC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	51
BsrBI	CCGCTC	1 cut(s)	264
BssMI	GATC	2 cut(s)	152, 172
BssNI	GRCGYC	1 cut(s)	35
Bst6I	CTCTTC	3 cut(s)	70, 223, 262
BstACI	GRCGYC	1 cut(s)	35
BstDEI	CTNAG	3 cut(s)	248, 323, 329
BstFNI	CGCG	1 cut(s)	43
BstKTI	GATC	2 cut(s)	155, 175
BstMAI	GTCTC	3 cut(s)	15, 51, 346
BstMBI	GATC	2 cut(s)	152, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 270
BstSCI	CCNGG	2 cut(s)	73, 103
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	78, 108
BtgZI	GCGATG	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	77, 106
CviAII	CATG	1 cut(s)	398
DdeI	CTNAG	3 cut(s)	248, 323, 329
DpnI	GATC	2 cut(s)	154, 174
DpnII	GATC	2 cut(s)	152, 172
DraI	TTTAAA	1 cut(s)	418
Eam1104I	CTCTTC	3 cut(s)	70, 223, 262
EarI	CTCTTC	3 cut(s)	70, 223, 262
Eco31I	GGTCTC	1 cut(s)	51
Esp3I	CGTCTC	2 cut(s)	15, 346
FaeI	CATG	1 cut(s)	401
FaiI	YATR	5 cut(s)	82, 95, 133, 201, 399
FatI	CATG	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	299, 390
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	78, 108
HapII	CCGG	2 cut(s)	75, 104
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	401
HinfI	GANTC	2 cut(s)	100, 231
HpaII	CCGG	2 cut(s)	75, 104
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	1 cut(s)	69
Hpy99I	CGWCG	2 cut(s)	37, 55
HpyCH4IV	ACGT	2 cut(s)	8, 35
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 270
HpyF3I	CTNAG	3 cut(s)	248, 323, 329
HpySE526I	ACGT	2 cut(s)	8, 35
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	401
Kzo9I	GATC	2 cut(s)	152, 172
LmnI	GCTCC	3 cut(s)	208, 261, 393
LpnPI	CCDG	3 cut(s)	88, 117, 396
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	2 cut(s)	299, 390
MaeII	ACGT	2 cut(s)	8, 35
MalI	GATC	2 cut(s)	154, 174
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	2 cut(s)	152, 172
MboII	GAAGA	6 cut(s)	57, 226, 240, 279, 381, 384
MluCI	AATT	3 cut(s)	375, 401, 433
MlyI	GAGTC	2 cut(s)	94, 240
MnlI	CCTC	7 cut(s)	73, 90, 119, 186, 199, 252, 263
MseI	TTAA	2 cut(s)	417, 436
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	2 cut(s)	75, 104
MspR9I	CCNGG	2 cut(s)	75, 105
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	132, 270
NciI	CCSGG	2 cut(s)	75, 105
NdeII	GATC	2 cut(s)	152, 172
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	3 cut(s)	143, 210, 395
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PflFI	GACNNNGTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	2 cut(s)	94, 239
PpsI	GAGTC	2 cut(s)	94, 239
PspN4I	GGNNCC	3 cut(s)	143, 210, 395
PspPI	GGNCC	2 cut(s)	77, 106
PsyI	GACNNNGTC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	417, 436
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	152, 172
Sau96I	GGNCC	2 cut(s)	77, 106
SchI	GAGTC	2 cut(s)	94, 240
ScrFI	CCNGG	2 cut(s)	75, 105
SetI	ASST	7 cut(s)	11, 38, 132, 304, 324, 335, 424
SmiMI	CAYNNNNRTG	1 cut(s)	180
Sse9I	AATT	3 cut(s)	375, 401, 433
SsiI	CCGC	3 cut(s)	43, 264, 273
SspMI	CTAG	2 cut(s)	299, 390
StyD4I	CCNGG	2 cut(s)	73, 103
TaiI	ACGT	2 cut(s)	11, 38
TaqI	TCGA	3 cut(s)	32, 53, 343
TasI	AATT	3 cut(s)	375, 401, 433
Tru1I	TTAA	2 cut(s)	417, 436
Tru9I	TTAA	2 cut(s)	417, 436
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	2 cut(s)	39, 154
Tth111I	GACNNNGTC	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	403
XspI	CTAG	2 cut(s)	299, 390
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.