Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Forward (+)

30650653 .. 30652381

Gene Structure 1729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG298400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTGTTTGGAAAGCGTGGGAAGAGTGGTTTGGTTGCCTTGAACCTGGATTTCGCCCAAGTCGTCACCTTTGTGAAGGAGCGCCTAGGCAAAGAGGTTGAGATGGGTGGCTGCAAAGGACCCATCACAACATTCATTGTCGAGCCCTTCATTCCCCACAATGAAGAGTTTTATATTAACATCGTCTCAGATAGACTTGGGAATAGCATAAGCTTCTCAGAGTGTGGAGGAATTGACATTGAGGAGAACTGGGATAAGGTCAAGACCATATTTGTCCCAACGGGAGCTTCCCTTACACCAGATGTATCTGCTCCACTTGTTGCAACCCTTCCCTTGGAGATTAAGAGCGAAATTGAGGACTTTATCAAGTCCGTATTTGCTCTATTTCAAGATCTCGACTTCACTTTTCTGGAGATGAATCCTTTTGCATTGGTTGATGGAAAGCCATATCCTTTGGATATGAGAGGCGAGCTGGATGACACTGCTGCTTTCAAGAACTTCAAAAAGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTACAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

188

Amino Acids

21.0

Weight (kDa)

4.7

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synth_N	PF24948	1 - 170	9.7e-55	ATP-citrate synthase ATP-grasp domain
ATP-grasp_2	PF08442	2 - 143	1.5e-12	ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	43, 389, 493, 502, 521
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	4 cut(s)	14, 46, 271, 303
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	213, 287, 472
AluI	AGCT	3 cut(s)	213, 287, 472
Alw26I	GTCTC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	111, 485
ApoI	RAATTY	1 cut(s)	521
AspA2I	CCTAGG	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	119
AvrII	CCTAGG	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	98, 472
BccI	CCATC	3 cut(s)	97, 131, 431
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	1 cut(s)	85
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	2 cut(s)	112, 486
BlnI	CCTAGG	1 cut(s)	85
BlsI	GCNGC	2 cut(s)	113, 487
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	85, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	85, 333
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	201, 231
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	98, 472
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	200, 230
BspLI	GGNNCC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	85, 333
BssMI	GATC	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	85, 333
Bst2UI	CCWGG	1 cut(s)	47
Bst6I	CTCTTC	3 cut(s)	17, 159, 535
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	187, 217
BstF5I	GGATG	1 cut(s)	481
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	2 cut(s)	98, 472
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	470
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	119
CviJI	RGCY	6 cut(s)	111, 145, 213, 287, 445, 472
CviKI_1	RGCY	6 cut(s)	111, 145, 213, 287, 445, 472
DdeI	CTNAG	2 cut(s)	187, 217
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eam1104I	CTCTTC	3 cut(s)	17, 159, 535
EarI	CTCTTC	3 cut(s)	17, 159, 535
Eco130I	CCWWGG	2 cut(s)	85, 333
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	85, 333
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	85, 333
Esp3I	CGTCTC	1 cut(s)	190
FaiI	YATR	6 cut(s)	174, 209, 269, 448, 461, 548
FaqI	GGGAC	1 cut(s)	260
Fnu4HI	GCNGC	2 cut(s)	112, 486
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	112, 486
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	112, 486
GsuI	CTGGAG	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	85
HhaI	GCGC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	2 cut(s)	418, 550
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	190, 220
Hpy188III	TCNNGA	5 cut(s)	262, 389, 395, 410, 493
HpyAV	CCTTC	3 cut(s)	70, 157, 338
HpyCH4V	TGCA	3 cut(s)	114, 323, 428
HpyF3I	CTNAG	2 cut(s)	187, 217
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	3 cut(s)	79, 284, 316
LpnPI	CCDG	6 cut(s)	32, 59, 235, 312, 395, 458
Lsp1109I	GCAGC	2 cut(s)	98, 472
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	34, 176, 552
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	3 cut(s)	231, 351, 521
MlyI	GAGTC	1 cut(s)	559
MnlI	CCTC	5 cut(s)	88, 221, 235, 349, 458
MseI	TTAA	2 cut(s)	177, 342
MslI	CAYNNNNRTG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	113, 487
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	177, 342
SatI	GCNGC	2 cut(s)	112, 486
Sau3AI	GATC	1 cut(s)	391
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	7 cut(s)	48, 71, 99, 215, 261, 289, 474
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	3 cut(s)	231, 351, 521
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	85, 333
TaqI	TCGA	2 cut(s)	141, 396
TasI	AATT	3 cut(s)	231, 351, 521
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	2 cut(s)	177, 342
Tru9I	TTAA	2 cut(s)	177, 342
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	111, 485
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	4 cut(s)	124, 139, 177, 431
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	521
XmaJI	CCTAGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.