Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Forward (+)

62609458 .. 62613087

Gene Structure 3630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGCGCGCAAGAAGATCCGAGAGTACGACTCCAAGAGGTTGTTGAAGGAACACTTCAAGAGGATCGCTGGCCGTGAATTGCCTCTCAAATCTGCCCAGATTACCGAATCAACTGATTTCAATGAGCTACTTGAGAAGGAGACTTGGCTCTCTACTTCCAAGTTGGTTGTCAAGCCTGACATGTTGTTTGGAAAGCGTGGGAAGAGTGGTTTGGTTGCCTTGAACCTGGATTTCGCTCAAGTCGTCACCTTTGTGAAGGAGCGCCTAGGCAAAGAGGTTGAGATGGGTGGCTGCAAAGGACCCATCACAACATTCATTGTCGAGCCCTTCATTCCCCACAATGAAGAGTTCTACATTAACATCGTCTCTGATAGACTTGGGAATAGCATAAGCTTCTCAGAGTGTGGAGGAATTGACATTGAGGAGAACTGGGATAAGGTTAAAACCATATTTGTCCCAACGGGAGCTTCCCTTTCACCAGATGTATCTGCTCCACTTGTTGCAACCCTTCCCTTGGAGATTAAGAGCGAAATTGAGGAGTTTATCAAGTCCGTATTTGCTCTATTTCAAGATCTCGACTTCACTTTTTTGGAGATGAATCCTTTTGCATTGGTTGATGGAAAGCCATATCCTTTGGATATGAGAGGCGAGCTGGATGACACTGCTGCTTTCAAGAACTTCAAAAAGTGGGGCAATATTGAATTTCCAATGCCATTTGGAAGAGTTATGAGTCCTACAGAAAAGTTTATTCACGGGCTAGATGAAAAGACAAGTGCATCTTTGAAATTTACAGTTCTGAACCCTAAGGGACGAATTTGGACTATGGTTGCTGGAGGAGGTGCAAGTGTTATTTACGCAGACACGGTTGGTGATCTTGGCTTTGCTAATGAGCTCGGAAACTATGCTGAATATAGTGGAGCACCAAATGAAGAGGAGGTATTGCAGTATGCCAGAGTTGTGATTGATTGTGCAACTTCTGATCCTGATGGCCGTAAGAGAGCCCTTGTAATTGGAGGGGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATCATTAGAGCCTTGAAGGAGAAGGAATCAAAGCTTAAAGCTGCTAGGATGCATCTTTATGTCAGGAGAGGAGGTCCCAACTACCAGAGGGGACTTGCAAAAATGAGGGCACTTGCAGAGGAAATTGGCCTCCCTATTGAGGTCTATGGTCCTGAAGCAACAATGACTGGTATTTGCAAGCAGGCAATTCAGTGCATCAGTGCTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

423

Amino Acids

46.75

Weight (kDa)

5.84

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synth_N	PF24948	2 - 230	1e-74	ATP-citrate synthase ATP-grasp domain
ATP-grasp_2	PF08442	6 - 203	9.8e-17	ATP-grasp domain
Citrate_bind	PF16114	241 - 417	3.6e-84	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AclWI	GGATC	3 cut(s)	10, 71, 974
AcoI	YGGCCR	2 cut(s)	70, 988
AcsI	RAATTY	3 cut(s)	701, 785, 813
AcuI	CTGAAG	1 cut(s)	1233
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	514, 1198
AflIII	ACRYGT	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	4 cut(s)	194, 226, 451, 483
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	8 cut(s)	127, 393, 467, 652, 892, 1043, 1093, 1100
AluI	AGCT	8 cut(s)	127, 393, 467, 652, 892, 1043, 1093, 1100
Alw21I	GWGCWC	2 cut(s)	894, 922
Alw26I	GTCTC	2 cut(s)	134, 370
AlwI	GGATC	3 cut(s)	10, 71, 974
AoxI	GGCC	3 cut(s)	70, 988, 1186
ApeKI	GCWGC	6 cut(s)	291, 665, 1043, 1100, 1262, 1265
ApoI	RAATTY	3 cut(s)	701, 785, 813
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspA2I	CCTAGG	1 cut(s)	265
AspLEI	GCGC	3 cut(s)	7, 9, 264
AspS9I	GGNCC	3 cut(s)	299, 1133, 1208
AsuHPI	GGTGA	3 cut(s)	238, 468, 881
AvaII	GGWCC	3 cut(s)	299, 1133, 1208
AvrII	CCTAGG	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	804
BaeGI	GKGCMC	1 cut(s)	1171
BanII	GRGCYC	3 cut(s)	327, 894, 1003
Bbv12I	GWGCWC	2 cut(s)	894, 922
BbvI	GCAGC	6 cut(s)	278, 652, 1030, 1087, 1249, 1252
BccI	CCATC	4 cut(s)	277, 311, 611, 980
BceAI	ACGGC	2 cut(s)	57, 975
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	134, 370
BfaI	CTAG	3 cut(s)	266, 758, 1104
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	265
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	6 cut(s)	292, 666, 1044, 1101, 1263, 1266
BlnI	CCTAGG	1 cut(s)	265
BlsI	GCNGC	6 cut(s)	293, 667, 1045, 1102, 1264, 1267
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	3 cut(s)	299, 1133, 1208
BmgT120I	GGNCC	3 cut(s)	299, 1133, 1208
BmiI	GGNNCC	2 cut(s)	301, 1135
BmrFI	CCNGG	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	5 cut(s)	785, 1068, 1098, 1120, 1263
BmuI	ACTGGG	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	1 cut(s)	852
BpuEI	CTTGAG	2 cut(s)	152, 222
BsaJI	CCNNGG	2 cut(s)	265, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	1117, 1147
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 1198
Bse1I	ACTGG	2 cut(s)	434, 1231
Bse21I	CCTNAGG	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	265, 513
BseGI	GGATG	2 cut(s)	661, 1113
BseLI	CCNNNNNNNGG	2 cut(s)	514, 1198
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	434, 1231
BsePI	GCGCGC	1 cut(s)	5
BseRI	GAGGAG	5 cut(s)	437, 551, 849, 947, 1143
BseSI	GKGCMC	1 cut(s)	1171
BseXI	GCAGC	6 cut(s)	278, 652, 1030, 1087, 1249, 1252
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	3 cut(s)	72, 990, 1188
BsiHKAI	GWGCWC	2 cut(s)	894, 922
BslFI	GGGAC	4 cut(s)	440, 822, 1119, 1164
BslI	CCNNNNNNNGG	2 cut(s)	514, 1198
BsmAI	GTCTC	2 cut(s)	134, 370
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	4 cut(s)	440, 822, 1119, 1164
BsnI	GGCC	3 cut(s)	72, 990, 1188
Bsp1286I	GDGCHC	5 cut(s)	327, 894, 922, 1003, 1171
Bsp143I	GATC	5 cut(s)	15, 63, 571, 871, 979
BspANI	GGCC	3 cut(s)	72, 990, 1188
BspCNI	CTCAG	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	301, 1135
BspPI	GGATC	3 cut(s)	10, 71, 974
BsrI	ACTGG	2 cut(s)	434, 1231
BssECI	CCNNGG	2 cut(s)	265, 513
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	5 cut(s)	15, 63, 571, 871, 979
BssT1I	CCWWGG	2 cut(s)	265, 513
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	793, 865
Bst6I	CTCTTC	4 cut(s)	197, 339, 715, 924
BstC8I	GCNNGC	5 cut(s)	7, 70, 650, 1238, 1242
BstDEI	CTNAG	2 cut(s)	397, 804
BstF5I	GGATG	2 cut(s)	661, 1113
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	3 cut(s)	7, 9, 264
BstKTI	GATC	5 cut(s)	18, 66, 574, 874, 982
BstMAI	GTCTC	2 cut(s)	134, 370
BstMBI	GATC	5 cut(s)	15, 63, 571, 871, 979
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	1171
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	6 cut(s)	278, 652, 1030, 1087, 1249, 1252
BstX2I	RGATCY	2 cut(s)	15, 571
BstYI	RGATCY	2 cut(s)	15, 571
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	72, 990, 1188
BtsCI	GGATG	2 cut(s)	661, 1113
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	4 cut(s)	660, 1032, 1256, 1264
Cac8I	GCNNGC	5 cut(s)	7, 70, 650, 1238, 1242
CfoI	GCGC	3 cut(s)	7, 9, 264
Cfr13I	GGNCC	3 cut(s)	299, 1133, 1208
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	181, 1269
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	397, 804
DpnI	GATC	5 cut(s)	17, 65, 573, 873, 981
DpnII	GATC	5 cut(s)	15, 63, 571, 871, 979
EaeI	YGGCCR	2 cut(s)	70, 988
Eam1104I	CTCTTC	4 cut(s)	197, 339, 715, 924
EarI	CTCTTC	4 cut(s)	197, 339, 715, 924
Ecl136II	GAGCTC	1 cut(s)	892
Eco130I	CCWWGG	2 cut(s)	265, 513
Eco24I	GRGCYC	3 cut(s)	327, 894, 1003
Eco47I	GGWCC	3 cut(s)	299, 1133, 1208
Eco53kI	GAGCTC	1 cut(s)	892
Eco57I	CTGAAG	1 cut(s)	1233
Eco81I	CCTNAGG	1 cut(s)	804
EcoICRI	GAGCTC	1 cut(s)	892
EcoO109I	RGGNCCY	2 cut(s)	299, 1133
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	265, 513
EcoT22I	ATGCAT	1 cut(s)	1113
EcoT38I	GRGCYC	3 cut(s)	327, 894, 1003
ErhI	CCWWGG	2 cut(s)	265, 513
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	2 cut(s)	184, 1272
FalI	AAGNNNNNCTT	4 cut(s)	38, 70, 763, 795
FaqI	GGGAC	4 cut(s)	440, 822, 1119, 1164
FatI	CATG	2 cut(s)	180, 1268
Fnu4HI	GCNGC	6 cut(s)	292, 666, 1044, 1101, 1263, 1266
FokI	GGATG	2 cut(s)	668, 1120
FriOI	GRGCYC	3 cut(s)	327, 894, 1003
Fsp4HI	GCNGC	6 cut(s)	292, 666, 1044, 1101, 1263, 1266
FspBI	CTAG	3 cut(s)	266, 758, 1104
GlaI	GCGC	3 cut(s)	6, 8, 263
GluI	GCNGC	6 cut(s)	292, 666, 1044, 1101, 1263, 1266
GsuI	CTGGAG	1 cut(s)	852
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	3 cut(s)	72, 990, 1188
HhaI	GCGC	3 cut(s)	7, 9, 264
Hin1II	CATG	2 cut(s)	184, 1272
Hin6I	GCGC	3 cut(s)	5, 7, 262
HinP1I	GCGC	3 cut(s)	5, 7, 262
HindIII	AAGCTT	2 cut(s)	391, 1091
HinfI	GANTC	5 cut(s)	29, 107, 598, 730, 1085
HphI	GGTGA	3 cut(s)	238, 468, 881
Hpy188I	TCNGA	6 cut(s)	20, 370, 400, 798, 896, 979
Hpy188III	TCNNGA	7 cut(s)	58, 569, 575, 673, 983, 1123, 1211
HpyAV	CCTTC	7 cut(s)	40, 130, 250, 337, 518, 1069, 1075
HpyCH4III	ACNGT	2 cut(s)	793, 865
HpyF3I	CTNAG	2 cut(s)	397, 804
Hsp92II	CATG	2 cut(s)	184, 1272
HspAI	GCGC	3 cut(s)	5, 7, 262
Kzo9I	GATC	5 cut(s)	15, 63, 571, 871, 979
LmnI	GCTCC	4 cut(s)	259, 464, 496, 917
Lsp1109I	GCAGC	6 cut(s)	278, 652, 1030, 1087, 1249, 1252
LweI	GCATC	5 cut(s)	785, 1068, 1098, 1120, 1263
MaeI	CTAG	3 cut(s)	266, 758, 1104
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	5 cut(s)	17, 65, 573, 873, 981
MboI	GATC	5 cut(s)	15, 63, 571, 871, 979
MboII	GAAGA	5 cut(s)	25, 214, 356, 732, 941
MflI	RGATCY	2 cut(s)	15, 571
MhlI	GDGCHC	5 cut(s)	327, 894, 922, 1003, 1171
MlyI	GAGTC	2 cut(s)	23, 739
Mph1103I	ATGCAT	1 cut(s)	1113
MseI	TTAA	4 cut(s)	357, 441, 522, 1095
MslI	CAYNNNNRTG	2 cut(s)	251, 1116
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	7
NdeII	GATC	5 cut(s)	15, 63, 571, 871, 979
NlaIII	CATG	2 cut(s)	184, 1272
NlaIV	GGNNCC	2 cut(s)	301, 1135
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	1113
NspI	RCATGY	1 cut(s)	184
OliI	CACNNNNGTG	1 cut(s)	251
PauI	GCGCGC	1 cut(s)	5
PciI	ACATGT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	107, 598, 1085
PkrI	GCNGC	6 cut(s)	293, 667, 1045, 1102, 1264, 1267
PleI	GAGTC	2 cut(s)	23, 738
PpsI	GAGTC	2 cut(s)	23, 738
PpuMI	RGGWCCY	2 cut(s)	299, 1133
PscI	ACATGT	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	894
Psp5II	RGGWCCY	2 cut(s)	299, 1133
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	301, 1135
PspPI	GGNCC	3 cut(s)	299, 1133, 1208
PspPPI	RGGWCCY	2 cut(s)	299, 1133
PsuI	RGATCY	2 cut(s)	15, 571
PteI	GCGCGC	1 cut(s)	5
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	2 cut(s)	251, 1116
SacI	GAGCTC	1 cut(s)	894
SaqAI	TTAA	4 cut(s)	357, 441, 522, 1095
SatI	GCNGC	6 cut(s)	292, 666, 1044, 1101, 1263, 1266
Sau3AI	GATC	5 cut(s)	15, 63, 571, 871, 979
Sau96I	GGNCC	3 cut(s)	299, 1133, 1208
SchI	GAGTC	2 cut(s)	23, 739
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	5 cut(s)	327, 894, 922, 1003, 1171
SfaNI	GCATC	5 cut(s)	785, 1068, 1098, 1120, 1263
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	3 cut(s)	299, 1133, 1208
SmiMI	CAYNNNNRTG	2 cut(s)	251, 1116
SmlI	CTYRAG	2 cut(s)	131, 237
SmoI	CTYRAG	2 cut(s)	131, 237
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	3 cut(s)	266, 758, 1104
SstI	GAGCTC	1 cut(s)	894
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	265, 513
TaaI	ACNGT	2 cut(s)	793, 865
TaqI	TCGA	2 cut(s)	321, 576
TfiI	GAWTC	3 cut(s)	107, 598, 1085
Tru1I	TTAA	4 cut(s)	357, 441, 522, 1095
Tru9I	TTAA	4 cut(s)	357, 441, 522, 1095
TscAI	CASTG	4 cut(s)	667, 1039, 1256, 1264
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	6 cut(s)	291, 665, 1043, 1100, 1262, 1265
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	6 cut(s)	304, 319, 357, 611, 777, 942
TspGWI	ACGGA	1 cut(s)	541
TspRI	CASTG	4 cut(s)	667, 1039, 1256, 1264
VpaK11BI	GGWCC	3 cut(s)	299, 1133, 1208
XapI	RAATTY	3 cut(s)	701, 785, 813
XceI	RCATGY	1 cut(s)	184
XmaJI	CCTAGG	1 cut(s)	265
XspI	CTAG	3 cut(s)	266, 758, 1104
Zsp2I	ATGCAT	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.