Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8081680.1

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Forward (+)

108 .. 492

Gene Structure 385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8081680.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgttgtttggaaagcgtgggaagagtggtttggttgccttgaacctggatttcgcccaagtcgtcacctttgtgaaggagcgcctaggcaaagaggttgagatgggtggctgcaaaggacccatcacaacattcattgtcgagcccttcattccccacaatgaagagttttatattaacatcgtctcagatagacttgggaatagcataagcttctcagagtgtggaggaattgacattgaggagaactgggataaggtatgtttcggatgtcattttgttactgaatatatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

98

Amino Acids

10.98

Weight (kDa)

4.9

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	111
AspA2I	CCTAGG	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	119
AvrII	CCTAGG	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	97, 131
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	1 cut(s)	112
BlnI	CCTAGG	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	201, 231
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	200, 230
BspLI	GGNNCC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	47
Bst6I	CTCTTC	2 cut(s)	17, 159
BstDEI	CTNAG	2 cut(s)	187, 217
BstF5I	GGATG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	119
CviJI	RGCY	3 cut(s)	111, 145, 213
CviKI_1	RGCY	3 cut(s)	111, 145, 213
DdeI	CTNAG	2 cut(s)	187, 217
Eam1104I	CTCTTC	2 cut(s)	17, 159
EarI	CTCTTC	2 cut(s)	17, 159
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	190
FaiI	YATR	4 cut(s)	174, 209, 262, 291
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	1 cut(s)	282
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	85
HhaI	GCGC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	211
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	4 cut(s)	190, 220, 269, 296
HpyAV	CCTTC	2 cut(s)	70, 157
HpyCH4V	TGCA	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	187, 217
HspAI	GCGC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	32, 59, 235
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	64, 280
MboII	GAAGA	2 cut(s)	34, 176
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	3 cut(s)	88, 221, 235
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	5 cut(s)	48, 71, 99, 215, 261
SgeI	CNNG	9 cut(s)	29, 52, 58, 59, 71, 98, 154, 209, 262
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	231
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	85
TaqI	TCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	124, 139, 177
VpaK11BI	GGWCC	1 cut(s)	119
XmaJI	CCTAGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.