Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Reverse (-)

22388527 .. 22391237

Gene Structure 2711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G60810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGCTCGGAAGAAGATCAGAGAGTATGACTCAAAGAGACTGGTGAAAGAACACTTCAAAAGACTCTCTGGTCAAGAATTGCCTATCAGATCCGTTCAGATTAACCAAGAGACTGATCTAAATGAGCTAGTAGAGAGAGAGCCTTGGCTCTCATCTGAGAAGCTTGTGGTGAAACCTGATATGTTGTTCGGAAAGCGTGGCAAAAGCGGTTTGGTTGCATTGAACTTAGATTTCGCTGATGTTGCAACTTTCGTGAAAGAACGCTTAGGCAAAGAGGTAGAGATGAGTGGATGCAAAGGACCCATAACAACATTCATTGTTGAACCATTTGTCCCACACAATGAAGAGTTCTATCTTAATATTGTCTCTGATAGACTTGGCTGCAGCATTAGCTTTTCGGAGTGTGGAGGAATTGACATCGAGGAGAACTGGGACAAGGTCAAGACCATAACTATACCAACAGGTGCTTCCCTGACATTTGAGATATGTGCACCTCTTGTTGCAACCCTTCCTCTAGAGATCAAAGGGGAACTTGAAGATTTTATTCAAGTCATTTTTACCCTATTCGAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTCACATTGGTTGATGGAAAGCCTTATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTGCTTTCAAAAACTTTAAGAAGTGGGGCGACATTGAATTTCCCATGCCATTTGGAAGAGTGATGAGTTCAACAGAGAGCTTCATCCACGGTCTAGATGAGAAGACAAGTGCCTCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGAATTTGGACTATGGTAGCTGGAGGAGGTGCAAGTGTCATCTATGCTGATACCGTTGGAGATCTCGGGTATGCATCTGAGCTTGGCAATTATGCTGAATACAGTGGAGCACCCAAAGAAGACGAGGTTTTGCAGTATGCCAGAGTTGTCATTGATTGTGCTACAGCGAATCCGGATGGAAAAAGCAGGGCTCTGGTAATTGGAGGTGGAATTGCTAACTTCACCGATGTTGCTGCTACCTTCAATGGCATAATCCGAGCTCTCAAGGAAAAAGAAGCAAAGCTGAAAGCAGCAAGGATGCATATATTTGTGAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGAGATCACTTGGAGACGAAATCGGTGTCCCCATCGAGGTGTATGGTCCTGAAGCAACAATGACAGGTATATGCAAGGAGGCAATCCAGTACATCACAGCGGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

423

Amino Acids

46.76

Weight (kDa)

5.18

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synth_N	PF24948	2 - 230	4e-74	ATP-citrate synthase ATP-grasp domain
ATP-grasp_2	PF08442	6 - 203	8.6e-16	ATP-grasp domain
Citrate_bind	PF16114	241 - 417	1.6e-84	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	69
AccIII	TCCGGA	1 cut(s)	982
AciI	CCGC	3 cut(s)	207, 663, 1262
AclWI	GGATC	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	701, 813
AcuI	CTGAAG	1 cut(s)	1233
AfaI	GTAC	1 cut(s)	1253
AfiI	CCNNNNNNNGG	1 cut(s)	1198
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	9 cut(s)	127, 163, 393, 652, 744, 830, 892, 1070, 1093
AluI	AGCT	9 cut(s)	127, 163, 393, 652, 744, 830, 892, 1070, 1093
Alw21I	GWGCWC	3 cut(s)	493, 922, 1072
Alw26I	GTCTC	4 cut(s)	31, 104, 370, 1170
Alw44I	GTGCAC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	84
AlwNI	CAGNNNCTG	1 cut(s)	1265
Ama87I	CYCGRG	1 cut(s)	875
Aor13HI	TCCGGA	1 cut(s)	982
ApaLI	GTGCAC	1 cut(s)	489
ApeKI	GCWGC	6 cut(s)	381, 384, 665, 1043, 1100, 1265
ApoI	RAATTY	2 cut(s)	701, 813
ArsI	GACNNNNNNTTYG	2 cut(s)	1173, 1205
Asp700I	GAANNNNTTC	1 cut(s)	602
AspS9I	GGNCC	3 cut(s)	299, 1133, 1208
AsuHPI	GGTGA	4 cut(s)	55, 181, 659, 1024
AsuII	TTCGAA	1 cut(s)	567
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	3 cut(s)	299, 1133, 1208
BaeGI	GKGCMC	1 cut(s)	493
BanII	GRGCYC	2 cut(s)	1003, 1072
BbsI	GAAGAC	2 cut(s)	773, 936
Bbv12I	GWGCWC	3 cut(s)	493, 922, 1072
BbvI	GCAGC	6 cut(s)	368, 396, 652, 1030, 1112, 1252
BccI	CCATC	3 cut(s)	611, 980, 1202
BcgI	CGANNNNNNTGC	2 cut(s)	1025, 1059
BcoDI	GTCTC	4 cut(s)	31, 104, 370, 1170
BfaI	CTAG	3 cut(s)	128, 515, 758
BfmI	CTRYAG	2 cut(s)	382, 972
BglII	AGATCT	2 cut(s)	571, 871
BisI	GCNGC	7 cut(s)	382, 385, 666, 1044, 1101, 1263, 1266
BlsI	GCNGC	7 cut(s)	383, 386, 667, 1045, 1102, 1264, 1267
Bme18I	GGWCC	3 cut(s)	299, 1133, 1208
BmeT110I	CYCGRG	1 cut(s)	875
BmgT120I	GGNCC	3 cut(s)	299, 1133, 1208
BmiI	GGNNCC	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	3 cut(s)	281, 893, 1098
BmuI	ACTGGG	1 cut(s)	439
BpiI	GAAGAC	2 cut(s)	773, 936
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	265
Bpu14I	TTCGAA	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	1058
BsaJI	CCNNGG	3 cut(s)	143, 751, 804
BsaWI	WCCGGW	1 cut(s)	982
Bsc4I	CCNNNNNNNGG	1 cut(s)	1198
Bse1I	ACTGG	3 cut(s)	45, 434, 1249
BseAI	TCCGGA	1 cut(s)	982
BseDI	CCNNGG	3 cut(s)	143, 751, 804
BseGI	GGATG	4 cut(s)	296, 747, 991, 1113
BseLI	CCNNNNNNNGG	1 cut(s)	1198
BseMII	CTCAG	2 cut(s)	147, 879
BseNI	ACTGG	3 cut(s)	45, 434, 1249
BseRI	GAGGAG	4 cut(s)	437, 849, 1138, 1143
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	6 cut(s)	368, 396, 652, 1030, 1112, 1252
BsiHKAI	GWGCWC	3 cut(s)	493, 922, 1072
BsiHKCI	CYCGRG	1 cut(s)	875
BsiSI	CCGG	1 cut(s)	983
BslFI	GGGAC	4 cut(s)	317, 446, 1164, 1175
BslI	CCNNNNNNNGG	1 cut(s)	1198
BsmAI	GTCTC	4 cut(s)	31, 104, 370, 1170
BsmBI	CGTCTC	1 cut(s)	1170
BsmFI	GGGAC	4 cut(s)	317, 446, 1164, 1175
BsoBI	CYCGRG	1 cut(s)	875
Bsp119I	TTCGAA	1 cut(s)	567
Bsp1286I	GDGCHC	4 cut(s)	493, 922, 1003, 1072
Bsp13I	TCCGGA	1 cut(s)	982
Bsp143I	GATC	7 cut(s)	15, 89, 115, 519, 571, 871, 1166
BspACI	CCGC	3 cut(s)	207, 663, 1262
BspCNI	CTCAG	2 cut(s)	148, 880
BspEI	TCCGGA	1 cut(s)	982
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	386
BspPI	GGATC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	45, 434, 1249
BssECI	CCNNGG	3 cut(s)	143, 751, 804
BssMI	GATC	7 cut(s)	15, 89, 115, 519, 571, 871, 1166
BssT1I	CCWWGG	2 cut(s)	143, 804
Bst4CI	ACNGT	4 cut(s)	755, 793, 865, 914
Bst6I	CTCTTC	2 cut(s)	339, 715
BstBI	TTCGAA	1 cut(s)	567
BstDEI	CTNAG	4 cut(s)	156, 226, 265, 888
BstDSI	CCRYGG	1 cut(s)	751
BstF5I	GGATG	4 cut(s)	296, 747, 991, 1113
BstKTI	GATC	7 cut(s)	18, 92, 118, 522, 574, 874, 1169
BstMAI	GTCTC	4 cut(s)	31, 104, 370, 1170
BstMBI	GATC	7 cut(s)	15, 89, 115, 519, 571, 871, 1166
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 390
BstSFI	CTRYAG	2 cut(s)	382, 972
BstSLI	GKGCMC	1 cut(s)	493
BstV1I	GCAGC	6 cut(s)	368, 396, 652, 1030, 1112, 1252
BstV2I	GAAGAC	2 cut(s)	773, 936
BstX2I	RGATCY	3 cut(s)	89, 571, 871
BstYI	RGATCY	3 cut(s)	89, 571, 871
BtgI	CCRYGG	1 cut(s)	751
BtsCI	GGATG	4 cut(s)	296, 747, 991, 1113
BtsIMutI	CAGTG	2 cut(s)	789, 919
CaiI	CAGNNNCTG	1 cut(s)	1265
Cfr13I	GGNCC	3 cut(s)	299, 1133, 1208
Csp6I	GTAC	1 cut(s)	1252
CviAII	CATG	1 cut(s)	709
CviQI	GTAC	1 cut(s)	1252
DdeI	CTNAG	4 cut(s)	156, 226, 265, 888
DpnI	GATC	7 cut(s)	17, 91, 117, 521, 573, 873, 1168
DpnII	GATC	7 cut(s)	15, 89, 115, 519, 571, 871, 1166
DrdI	GACNNNNNNGTC	1 cut(s)	69
DseDI	GACNNNNNNGTC	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	339, 715
EarI	CTCTTC	2 cut(s)	339, 715
Ecl136II	GAGCTC	1 cut(s)	1070
Eco130I	CCWWGG	2 cut(s)	143, 804
Eco24I	GRGCYC	2 cut(s)	1003, 1072
Eco47I	GGWCC	3 cut(s)	299, 1133, 1208
Eco53kI	GAGCTC	1 cut(s)	1070
Eco57I	CTGAAG	1 cut(s)	1233
Eco88I	CYCGRG	1 cut(s)	875
EcoICRI	GAGCTC	1 cut(s)	1070
EcoO109I	RGGNCCY	1 cut(s)	299
EcoT14I	CCWWGG	2 cut(s)	143, 804
EcoT22I	ATGCAT	2 cut(s)	886, 1113
EcoT38I	GRGCYC	2 cut(s)	1003, 1072
ErhI	CCWWGG	2 cut(s)	143, 804
Esp3I	CGTCTC	1 cut(s)	1170
FaeI	CATG	1 cut(s)	712
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 763, 795
FaqI	GGGAC	4 cut(s)	317, 446, 1164, 1175
FatI	CATG	1 cut(s)	708
Fnu4HI	GCNGC	7 cut(s)	382, 385, 666, 1044, 1101, 1263, 1266
FokI	GGATG	4 cut(s)	303, 734, 998, 1120
FriOI	GRGCYC	2 cut(s)	1003, 1072
Fsp4HI	GCNGC	7 cut(s)	382, 385, 666, 1044, 1101, 1263, 1266
FspBI	CTAG	3 cut(s)	128, 515, 758
GluI	GCNGC	7 cut(s)	382, 385, 666, 1044, 1101, 1263, 1266
GsuI	CTGGAG	1 cut(s)	852
HapII	CCGG	1 cut(s)	983
Hin1II	CATG	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	5 cut(s)	29, 63, 598, 799, 979
HpaII	CCGG	1 cut(s)	983
HphI	GGTGA	4 cut(s)	55, 181, 659, 1024
Hpy166II	GTNNAC	2 cut(s)	491, 789
Hpy188III	TCNNGA	9 cut(s)	74, 253, 442, 515, 575, 635, 758, 983, 1211
Hpy8I	GTNNAC	2 cut(s)	491, 789
HpyAV	CCTTC	2 cut(s)	518, 1060
HpyCH4III	ACNGT	4 cut(s)	755, 793, 865, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 390
HpyF3I	CTNAG	4 cut(s)	156, 226, 265, 888
Hsp92II	CATG	1 cut(s)	712
Kpn2I	TCCGGA	1 cut(s)	982
Kzo9I	GATC	7 cut(s)	15, 89, 115, 519, 571, 871, 1166
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	6 cut(s)	368, 396, 652, 1030, 1112, 1252
LweI	GCATC	3 cut(s)	281, 893, 1098
MaeI	CTAG	3 cut(s)	128, 515, 758
MalI	GATC	7 cut(s)	17, 91, 117, 521, 573, 873, 1168
MboI	GATC	7 cut(s)	15, 89, 115, 519, 571, 871, 1166
MboII	GAAGA	9 cut(s)	22, 25, 356, 548, 581, 732, 778, 822, 941
MflI	RGATCY	3 cut(s)	89, 571, 871
MhlI	GDGCHC	4 cut(s)	493, 922, 1003, 1072
MluCI	AATT	7 cut(s)	77, 411, 701, 813, 898, 1008, 1020
MlyI	GAGTC	2 cut(s)	23, 57
MmeI	TCCRAC	1 cut(s)	847
Mph1103I	ATGCAT	2 cut(s)	886, 1113
MroI	TCCGGA	1 cut(s)	982
MroXI	GAANNNNTTC	1 cut(s)	602
MseI	TTAA	3 cut(s)	102, 357, 681
MslI	CAYNNNNRTG	1 cut(s)	1199
MspA1I	CMGCKG	2 cut(s)	665, 1262
MspI	CCGG	1 cut(s)	983
MwoI	GCNNNNNNNGC	2 cut(s)	242, 390
NdeII	GATC	7 cut(s)	15, 89, 115, 519, 571, 871, 1166
NlaIII	CATG	1 cut(s)	712
NlaIV	GGNNCC	1 cut(s)	301
NsiI	ATGCAT	2 cut(s)	886, 1113
NspV	TTCGAA	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	3 cut(s)	598, 799, 979
PflFI	GACNNNGTC	1 cut(s)	437
PkrI	GCNGC	7 cut(s)	383, 386, 667, 1045, 1102, 1264, 1267
PleI	GAGTC	2 cut(s)	23, 57
PpsI	GAGTC	2 cut(s)	23, 57
PpuMI	RGGWCCY	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	1072
Psp5II	RGGWCCY	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	3 cut(s)	299, 1133, 1208
PspPPI	RGGWCCY	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	386
PstNI	CAGNNNCTG	1 cut(s)	1265
PsuI	RGATCY	3 cut(s)	89, 571, 871
PsyI	GACNNNGTC	1 cut(s)	437
RsaI	GTAC	1 cut(s)	1253
RsaNI	GTAC	1 cut(s)	1252
RseI	CAYNNNNRTG	1 cut(s)	1199
SacI	GAGCTC	1 cut(s)	1072
SaqAI	TTAA	3 cut(s)	102, 357, 681
SatI	GCNGC	7 cut(s)	382, 385, 666, 1044, 1101, 1263, 1266
Sau3AI	GATC	7 cut(s)	15, 89, 115, 519, 571, 871, 1166
Sau96I	GGNCC	3 cut(s)	299, 1133, 1208
SchI	GAGTC	2 cut(s)	23, 57
SduI	GDGCHC	4 cut(s)	493, 922, 1003, 1072
SfaNI	GCATC	3 cut(s)	281, 893, 1098
SfcI	CTRYAG	2 cut(s)	382, 972
SfuI	TTCGAA	1 cut(s)	567
SinI	GGWCC	3 cut(s)	299, 1133, 1208
SmiMI	CAYNNNNRTG	1 cut(s)	1199
SmlI	CTYRAG	1 cut(s)	1073
SmoI	CTYRAG	1 cut(s)	1073
Sse9I	AATT	7 cut(s)	77, 411, 701, 813, 898, 1008, 1020
SsiI	CCGC	3 cut(s)	207, 663, 1262
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	3 cut(s)	128, 515, 758
SstI	GAGCTC	1 cut(s)	1072
StyI	CCWWGG	2 cut(s)	143, 804
TaaI	ACNGT	4 cut(s)	755, 793, 865, 914
TaqI	TCGA	3 cut(s)	420, 567, 1197
TasI	AATT	7 cut(s)	77, 411, 701, 813, 898, 1008, 1020
TatI	WGTACW	1 cut(s)	1251
TauI	GCSGC	1 cut(s)	1265
TfiI	GAWTC	3 cut(s)	598, 799, 979
Tru1I	TTAA	3 cut(s)	102, 357, 681
Tru9I	TTAA	3 cut(s)	102, 357, 681
TscAI	CASTG	2 cut(s)	796, 919
TseI	GCWGC	6 cut(s)	381, 384, 665, 1043, 1100, 1265
TspDTI	ATGAA	4 cut(s)	304, 357, 611, 736
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	796, 919
Tth111I	GACNNNGTC	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	489
VpaK11BI	GGWCC	3 cut(s)	299, 1133, 1208
XapI	RAATTY	2 cut(s)	701, 813
XbaI	TCTAGA	2 cut(s)	514, 757
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	3 cut(s)	128, 515, 758
Zsp2I	ATGCAT	2 cut(s)	886, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.