Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Forward (+)

31365173 .. 31369278

Gene Structure 4106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32950.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGCACGCAAGAAGATCCGAGAGTACGACTCCAAGAGGCTATTGAAGGAACACTTCAAGAGGCTCGCTGGTCGTGAATTGCCTCTCAAATCTGCCCAGGTGACTGAATCAACTGATTTCAATGAGCTACTTGAGAAGGAGACTTGGCTCTCTACTTCCAAGTTGGTTGTCAAGCCTGATATGTTGTTTGGAAAGCGTGGGAAGAGTGGTTTGGTTGCCTTGAACCTAGATTTTGCTCAAGTTGTCACTTTCGTGAAGGAGCGCCTAGGCAAAGAGGTTGAGATGGGTGGATGCAAAGGACCCATCACAACATTCATTGTCGAGCCCTTCATTCCCCACAATGAAGAGTTTTACATTAACATTGTCTCAGAGAGACTTGGGAATAGCATAAGCTTCTCAGAGTGTGGAGGAATTGACATCGAGGAGAACTGGGATAAGGTTAAGACCATATTTGTCCCAACCGGAGCTTCCCTTACACCAGAAGTGTGTGCTCCACTTGTTGCAACCCTTCCCATGGAGATTAAGAGCGAAATTGAGGAGTTTATCAAGTCTGTATTTGCACTATTTCAAGATCTCGACTTCACTTTTCTGGAGATGAATCCTTTTGCATTGGTTGATGGAAAGCCATATCCTTTGGATATGAGAGGCGAGCTGGATGACACTGCTGCTTTCAAGAACTTCAAAAAGTGGGGCAATATTGAATTCCCAATGCCATTTGGAAGAGTTATGAGTTCTACAGAAAAGTTTATTCATGGGCTGGATGAAAAGACTAGTGCATCTTTGAAATTTACAGTCCTGAATCCTAAGGGACGAATTTGGACTATGGTTGCTGGAGGAGGTGCAAGTGTTATTTACGCAGACACGGTTGGAGATCTTGGCTTTGCTAATGAGCTTGGAAACTATGCTGAATATAGTGGAGCACCAAATGAAGAGGAGGTCTTGCAGTATGCCAGAGTTGTGATTGATTGTGCAACTTCTGATCCTGATGGCCGTAAGAGAGCCCTTGTAATTGGAGGAGGAATTGCTAACTTCACTGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAATCAAAGCTTAAAGCTGCTAGGATGCATCTTTATGTTAGGAGAGGAGGTCCCAACTACCAGAGGGGACTTGCAAAAATGAGGGCACTTGCAGAGGAAATTGGCCTCCCTATTGAGGTCTATGGTCCTGAAGCAACAATGACTGGTATTTGCAAGCAGGCAATTCAGTGCATCTCTGCTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

424

Amino Acids

46.8

Weight (kDa)

5.85

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synth_N	PF24948	2 - 230	2.1e-75	ATP-citrate synthase ATP-grasp domain
ATP-grasp_2	PF08442	6 - 203	2.1e-16	ATP-grasp domain
Citrate_bind	PF16114	241 - 417	7.6e-84	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	10, 974
AcoI	YGGCCR	1 cut(s)	988
AcsI	RAATTY	3 cut(s)	701, 785, 813
AcuI	CTGAAG	1 cut(s)	1233
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	514, 1198
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	4 cut(s)	194, 226, 451, 483
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	8 cut(s)	127, 393, 467, 652, 892, 1043, 1093, 1100
AluI	AGCT	8 cut(s)	127, 393, 467, 652, 892, 1043, 1093, 1100
Alw21I	GWGCWC	2 cut(s)	493, 922
Alw26I	GTCTC	3 cut(s)	134, 367, 370
AlwI	GGATC	2 cut(s)	10, 974
AoxI	GGCC	2 cut(s)	988, 1186
ApeKI	GCWGC	5 cut(s)	665, 1043, 1100, 1262, 1265
ApoI	RAATTY	3 cut(s)	701, 785, 813
AspA2I	CCTAGG	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	3 cut(s)	299, 1133, 1208
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	3 cut(s)	299, 1133, 1208
AvrII	CCTAGG	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	804
BaeGI	GKGCMC	1 cut(s)	1171
BanII	GRGCYC	2 cut(s)	327, 1003
Bbv12I	GWGCWC	2 cut(s)	493, 922
BbvI	GCAGC	5 cut(s)	652, 1030, 1087, 1249, 1252
BccI	CCATC	4 cut(s)	277, 311, 611, 980
BceAI	ACGGC	1 cut(s)	975
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	3 cut(s)	134, 367, 370
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	4 cut(s)	227, 266, 771, 1104
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	265
BglII	AGATCT	2 cut(s)	571, 871
BisI	GCNGC	5 cut(s)	666, 1044, 1101, 1263, 1266
BlnI	CCTAGG	1 cut(s)	265
BlsI	GCNGC	5 cut(s)	667, 1045, 1102, 1264, 1267
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	3 cut(s)	299, 1133, 1208
BmgT120I	GGNCC	3 cut(s)	299, 1133, 1208
BmiI	GGNNCC	2 cut(s)	301, 1135
BmrFI	CCNGG	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	5 cut(s)	281, 785, 1098, 1120, 1263
BmuI	ACTGGG	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	2 cut(s)	611, 852
BpuEI	CTTGAG	2 cut(s)	152, 222
BsaJI	CCNNGG	3 cut(s)	96, 265, 513
BsaWI	WCCGGW	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	1117, 1147
Bsc4I	CCNNNNNNNGG	2 cut(s)	514, 1198
Bse1I	ACTGG	2 cut(s)	434, 1231
Bse21I	CCTNAGG	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	3 cut(s)	96, 265, 513
BseGI	GGATG	4 cut(s)	296, 661, 766, 1113
BseLI	CCNNNNNNNGG	2 cut(s)	514, 1198
BseMII	CTCAG	2 cut(s)	381, 411
BseNI	ACTGG	2 cut(s)	434, 1231
BseRI	GAGGAG	6 cut(s)	437, 551, 849, 947, 1029, 1143
BseSI	GKGCMC	1 cut(s)	1171
BseXI	GCAGC	5 cut(s)	652, 1030, 1087, 1249, 1252
BshFI	GGCC	2 cut(s)	990, 1188
BsiHKAI	GWGCWC	2 cut(s)	493, 922
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	4 cut(s)	440, 822, 1119, 1164
BslI	CCNNNNNNNGG	2 cut(s)	514, 1198
BsmAI	GTCTC	3 cut(s)	134, 367, 370
BsmFI	GGGAC	4 cut(s)	440, 822, 1119, 1164
BsnI	GGCC	2 cut(s)	990, 1188
Bsp1286I	GDGCHC	5 cut(s)	327, 493, 922, 1003, 1171
Bsp143I	GATC	4 cut(s)	15, 571, 871, 979
Bsp19I	CCATGG	1 cut(s)	513
BspANI	GGCC	2 cut(s)	990, 1188
BspCNI	CTCAG	2 cut(s)	380, 410
BspLI	GGNNCC	2 cut(s)	301, 1135
BspPI	GGATC	2 cut(s)	10, 974
BsrI	ACTGG	2 cut(s)	434, 1231
BssECI	CCNNGG	3 cut(s)	96, 265, 513
BssMI	GATC	4 cut(s)	15, 571, 871, 979
BssT1I	CCWWGG	2 cut(s)	265, 513
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	793, 865
Bst6I	CTCTTC	4 cut(s)	197, 339, 715, 924
BstC8I	GCNNGC	5 cut(s)	7, 66, 650, 1238, 1242
BstDEI	CTNAG	3 cut(s)	367, 397, 804
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	4 cut(s)	296, 661, 766, 1113
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	4 cut(s)	18, 574, 874, 982
BstMAI	GTCTC	3 cut(s)	134, 367, 370
BstMBI	GATC	4 cut(s)	15, 571, 871, 979
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	1171
BstV1I	GCAGC	5 cut(s)	652, 1030, 1087, 1249, 1252
BstX2I	RGATCY	3 cut(s)	15, 571, 871
BstYI	RGATCY	3 cut(s)	15, 571, 871
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	990, 1188
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	4 cut(s)	296, 661, 766, 1113
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	3 cut(s)	660, 1032, 1256
Cac8I	GCNNGC	5 cut(s)	7, 66, 650, 1238, 1242
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	3 cut(s)	299, 1133, 1208
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	514, 752, 1269
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	367, 397, 804
DpnI	GATC	4 cut(s)	17, 573, 873, 981
DpnII	GATC	4 cut(s)	15, 571, 871, 979
EaeI	YGGCCR	1 cut(s)	988
Eam1104I	CTCTTC	4 cut(s)	197, 339, 715, 924
EarI	CTCTTC	4 cut(s)	197, 339, 715, 924
Eco130I	CCWWGG	2 cut(s)	265, 513
Eco24I	GRGCYC	2 cut(s)	327, 1003
Eco47I	GGWCC	3 cut(s)	299, 1133, 1208
Eco57I	CTGAAG	1 cut(s)	1233
Eco81I	CCTNAGG	1 cut(s)	804
EcoO109I	RGGNCCY	2 cut(s)	299, 1133
EcoRI	GAATTC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	2 cut(s)	265, 513
EcoT22I	ATGCAT	1 cut(s)	1113
EcoT38I	GRGCYC	2 cut(s)	327, 1003
ErhI	CCWWGG	2 cut(s)	265, 513
FaeI	CATG	3 cut(s)	517, 755, 1272
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	4 cut(s)	440, 822, 1119, 1164
FatI	CATG	3 cut(s)	513, 751, 1268
Fnu4HI	GCNGC	5 cut(s)	666, 1044, 1101, 1263, 1266
FokI	GGATG	4 cut(s)	303, 668, 773, 1120
FriOI	GRGCYC	2 cut(s)	327, 1003
Fsp4HI	GCNGC	5 cut(s)	666, 1044, 1101, 1263, 1266
FspBI	CTAG	4 cut(s)	227, 266, 771, 1104
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	5 cut(s)	666, 1044, 1101, 1263, 1266
GsuI	CTGGAG	2 cut(s)	611, 852
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	990, 1188
HapII	CCGG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	517, 755, 1272
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HindIII	AAGCTT	2 cut(s)	391, 1091
HinfI	GANTC	5 cut(s)	29, 107, 598, 799, 1085
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	1 cut(s)	112
Hpy188I	TCNGA	4 cut(s)	20, 370, 400, 979
HpyAV	CCTTC	7 cut(s)	40, 130, 250, 337, 518, 1069, 1075
HpyCH4III	ACNGT	2 cut(s)	793, 865
HpyF3I	CTNAG	3 cut(s)	367, 397, 804
Hsp92II	CATG	3 cut(s)	517, 755, 1272
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	15, 571, 871, 979
LmnI	GCTCC	4 cut(s)	259, 464, 496, 917
Lsp1109I	GCAGC	5 cut(s)	652, 1030, 1087, 1249, 1252
LweI	GCATC	5 cut(s)	281, 785, 1098, 1120, 1263
MaeI	CTAG	4 cut(s)	227, 266, 771, 1104
MaeIII	GTNAC	2 cut(s)	100, 244
MalI	GATC	4 cut(s)	17, 573, 873, 981
MboI	GATC	4 cut(s)	15, 571, 871, 979
MboII	GAAGA	5 cut(s)	25, 214, 356, 732, 941
MflI	RGATCY	3 cut(s)	15, 571, 871
MhlI	GDGCHC	5 cut(s)	327, 493, 922, 1003, 1171
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	847
Mph1103I	ATGCAT	1 cut(s)	1113
MseI	TTAA	4 cut(s)	357, 441, 522, 1095
MslI	CAYNNNNRTG	2 cut(s)	251, 1116
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	4 cut(s)	15, 571, 871, 979
NlaIII	CATG	3 cut(s)	517, 755, 1272
NlaIV	GGNNCC	2 cut(s)	301, 1135
NmuCI	GTSAC	2 cut(s)	100, 244
NsiI	ATGCAT	1 cut(s)	1113
OliI	CACNNNNGTG	1 cut(s)	251
PfeI	GAWTC	4 cut(s)	107, 598, 799, 1085
PkrI	GCNGC	5 cut(s)	667, 1045, 1102, 1264, 1267
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	2 cut(s)	299, 1133
Psp5II	RGGWCCY	2 cut(s)	299, 1133
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	301, 1135
PspPI	GGNCC	3 cut(s)	299, 1133, 1208
PspPPI	RGGWCCY	2 cut(s)	299, 1133
PsuI	RGATCY	3 cut(s)	15, 571, 871
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	2 cut(s)	251, 1116
SaqAI	TTAA	4 cut(s)	357, 441, 522, 1095
SatI	GCNGC	5 cut(s)	666, 1044, 1101, 1263, 1266
Sau3AI	GATC	4 cut(s)	15, 571, 871, 979
Sau96I	GGNCC	3 cut(s)	299, 1133, 1208
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	5 cut(s)	327, 493, 922, 1003, 1171
SfaNI	GCATC	5 cut(s)	281, 785, 1098, 1120, 1263
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	3 cut(s)	299, 1133, 1208
SmiMI	CAYNNNNRTG	2 cut(s)	251, 1116
SmlI	CTYRAG	2 cut(s)	131, 237
SmoI	CTYRAG	2 cut(s)	131, 237
SpeI	ACTAGT	1 cut(s)	770
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	4 cut(s)	227, 266, 771, 1104
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	2 cut(s)	265, 513
TaaI	ACNGT	2 cut(s)	793, 865
TaqI	TCGA	3 cut(s)	321, 420, 576
TfiI	GAWTC	4 cut(s)	107, 598, 799, 1085
Tru1I	TTAA	4 cut(s)	357, 441, 522, 1095
Tru9I	TTAA	4 cut(s)	357, 441, 522, 1095
TscAI	CASTG	3 cut(s)	667, 1039, 1256
TseFI	GTSAC	2 cut(s)	100, 244
TseI	GCWGC	5 cut(s)	665, 1043, 1100, 1262, 1265
Tsp45I	GTSAC	2 cut(s)	100, 244
TspDTI	ATGAA	7 cut(s)	304, 319, 357, 611, 740, 777, 942
TspRI	CASTG	3 cut(s)	667, 1039, 1256
VpaK11BI	GGWCC	3 cut(s)	299, 1133, 1208
XapI	RAATTY	3 cut(s)	701, 785, 813
XmaJI	CCTAGG	1 cut(s)	265
XspI	CTAG	4 cut(s)	227, 266, 771, 1104
Zsp2I	ATGCAT	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.