Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Forward (+)

41967060 .. 41968308

Gene Structure 1249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCACGCAAGAAGATCCGAGAGTACGACTCCAAGAGGTTGTTGAAGGAACACTTCAAGAGGATCGCTGGCCGTGAATTGCCTCTCAAATCTGCCCAGATTACCGAATCAACTGATTTCAATGAGCTACTTGAGAAGGAGACTTGGCTCTCTACTTCCAAGTTGGTTGTCAAGCCTGACATGTTGTTTGGAAAGCGTGGGAAGAGTGGTTTGGTTGCCTTGAACCTGGATTTCGCCCAAGTCGTCACCTTTGTGAAGGAGCGCCTAGGCAAAGAGGTTGAGATGGGTGGCTGCAAAGGACCCATCACAACATTCATTGTCGAGCCCTTCATTCCCCACAATGAAGAGTTTTATATTAACATCGTCTCAGATAGACTTGGGAATAACATAAGCTTCTCAGAGTGTGGAGGAATTGACATTGAGGAGAACTGGGATAAGGTCAAGACCATATTTGTCCCAACGGGAGCTTCCCTTACACCAGATGTATCTGCTCCACTTGTTGCAACCCTTCCCTTGGAGGTAATACCTTTGTGCTCAATGATATGGTATATTAGTTTTTGTTTATGTCTTCGCAGGAAGTCATTTTTCATGTTTTACACTATAGGTTTCCATCTTTTAATACATCAATGCCCAGTTTACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

214

Amino Acids

24.43

Weight (kDa)

8.17

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synth_N	PF24948	2 - 171	1e-52	ATP-citrate synthase ATP-grasp domain
ATP-grasp_2	PF08442	6 - 142	4.6e-12	ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	10, 71
AcoI	YGGCCR	1 cut(s)	70
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	514
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	4 cut(s)	46, 58, 121, 223
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	4 cut(s)	194, 226, 451, 483
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	3 cut(s)	127, 393, 467
AluI	AGCT	3 cut(s)	127, 393, 467
Alw21I	GWGCWC	1 cut(s)	536
Alw26I	GTCTC	2 cut(s)	134, 370
AlwI	GGATC	2 cut(s)	10, 71
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	291
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspA2I	CCTAGG	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	299
AvrII	CCTAGG	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	3 cut(s)	277, 311, 618
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	134, 370
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	265
BisI	GCNGC	1 cut(s)	292
BlnI	CCTAGG	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	227
BmrI	ACTGGG	2 cut(s)	439, 626
BmuI	ACTGGG	2 cut(s)	439, 626
BpiI	GAAGAC	1 cut(s)	560
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpuEI	CTTGAG	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	265, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse1I	ACTGG	2 cut(s)	434, 632
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	265, 513
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMII	CTCAG	2 cut(s)	381, 411
BseNI	ACTGG	2 cut(s)	434, 632
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	536
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	2 cut(s)	134, 370
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	327, 536
Bsp143I	GATC	2 cut(s)	15, 63
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	380, 410
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	2 cut(s)	10, 71
BsrI	ACTGG	2 cut(s)	434, 632
BssECI	CCNNGG	2 cut(s)	265, 513
BssMI	GATC	2 cut(s)	15, 63
BssT1I	CCWWGG	2 cut(s)	265, 513
Bst2UI	CCWGG	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	197, 339
BstC8I	GCNNGC	2 cut(s)	7, 70
BstDEI	CTNAG	2 cut(s)	367, 397
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	2 cut(s)	18, 66
BstMAI	GTCTC	2 cut(s)	134, 370
BstMBI	GATC	2 cut(s)	15, 63
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	7, 70
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	181, 589
CviJI	RGCY	8 cut(s)	72, 127, 148, 175, 291, 325, 393, 467
CviKI_1	RGCY	8 cut(s)	72, 127, 148, 175, 291, 325, 393, 467
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	367, 397
DpnI	GATC	2 cut(s)	17, 65
DpnII	GATC	2 cut(s)	15, 63
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	197, 339
EarI	CTCTTC	2 cut(s)	197, 339
Eco130I	CCWWGG	2 cut(s)	265, 513
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	265, 513
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	2 cut(s)	265, 513
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	2 cut(s)	184, 592
FaiI	YATR	9 cut(s)	182, 354, 389, 449, 544, 549, 565, 590, 602
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	2 cut(s)	180, 588
Fnu4HI	GCNGC	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	184, 592
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	2 cut(s)	29, 107
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	4 cut(s)	20, 370, 400, 644
Hpy188III	TCNNGA	2 cut(s)	58, 442
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	5 cut(s)	40, 130, 250, 337, 518
HpyCH4V	TGCA	2 cut(s)	294, 503
HpyF3I	CTNAG	2 cut(s)	367, 397
Hsp92II	CATG	2 cut(s)	184, 592
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	15, 63
LmnI	GCTCC	3 cut(s)	259, 464, 496
LpnPI	CCDG	8 cut(s)	54, 110, 189, 212, 239, 415, 492, 559
Lsp1109I	GCAGC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	17, 65
MboI	GATC	2 cut(s)	15, 63
MboII	GAAGA	4 cut(s)	25, 214, 356, 560
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	2 cut(s)	327, 536
MluCI	AATT	2 cut(s)	77, 411
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	7 cut(s)	30, 54, 93, 268, 401, 415, 511
MseI	TTAA	2 cut(s)	357, 617
MslI	CAYNNNNRTG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
NdeII	GATC	2 cut(s)	15, 63
NlaIII	CATG	2 cut(s)	184, 592
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	184
OliI	CACNNNNGTG	1 cut(s)	251
PciI	ACATGT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	299
PscI	ACATGT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	357, 617
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	2 cut(s)	15, 63
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	327, 536
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	77, 411
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	265, 513
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	77, 411
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	357, 617
Tru9I	TTAA	2 cut(s)	357, 617
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	291
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	304, 319, 357, 577
VpaK11BI	GGWCC	1 cut(s)	299
XceI	RCATGY	1 cut(s)	184
XmaJI	CCTAGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.