Rh2BG270200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002735
Physical Location & Seq
Forward (+)
29089100 .. 29117397
28298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG270200.1

Sequence Viewer

Length: 384 bp
ATGAATGCAAGATTTTGTTTTGGTTTGTGTTTGGTGAGTGAAAGCAACAATCTTGAGTGGAATTTGGTTTGGGGTTTGGTTGAAGTTCACAAGCGGTTGGTTTTTGAAAAAGAAGCTGAAAATCAGGAAGAAGGCGACCTCGATAAGGAAGAAGGTCACAGAGGTCGGCGTTCGAGTCGACGAGGTCGAGACGGCCATGGGGCACCACAGGACGGGGTGGGGGCGGAGGGTCCGATGGAGGAGATGAAGCCGTGTAGGGTGGCGGCGAAAGAGAGCGGGTTCTTGGATTGGGTCTTCTTTCTCGTTCACAACGCTGTCGTCGTAGTTGAAGGAGAAGATCGGGTCTTCTTCTTTCATGTTCACAGCACCGTCGCTGTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.37

Weight (kDa)

5.34

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 276
AccI GTMKAC 1 cut(s) 178
AciI CCGC 4 cut(s) 94, 224, 263, 276
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 145, 212
AgsI TTSAA 3 cut(s) 83, 107, 329
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 183
AoxI GGCC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 202
BbsI GAAGAC 2 cut(s) 286, 337
BccI CCATC 1 cut(s) 229
BceAI ACGGC 2 cut(s) 208, 235
BcoDI GTCTC 1 cut(s) 183
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 204, 231
BpiI GAAGAC 2 cut(s) 286, 337
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 212
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 145, 212
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 205
BshFI GGCC 1 cut(s) 195
BshNI GGYRCC 1 cut(s) 202
BslI CCNNNNNNNGG 2 cut(s) 145, 212
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 4 cut(s) 94, 224, 263, 276
BspANI GGCC 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 204, 231
BspT107I GGYRCC 1 cut(s) 202
BsrBI CCGCTC 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 370
BstDSI CCRYGG 1 cut(s) 196
BstENI CCTNNNNNAGG 1 cut(s) 143
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 205
BstV2I GAAGAC 2 cut(s) 286, 337
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 230
CviAII CATG 2 cut(s) 197, 356
CviJI RGCY 3 cut(s) 116, 195, 250
CviKI_1 RGCY 3 cut(s) 116, 195, 250
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 193
EciI GGCGGA 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 2 cut(s) 200, 359
FaiI YATR 2 cut(s) 198, 357
FatI CATG 2 cut(s) 196, 355
FauI CCCGC 1 cut(s) 269
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 2 cut(s) 200, 359
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HinfI GANTC 1 cut(s) 175
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 4 cut(s) 88, 179, 307, 361
Hpy188I TCNGA 2 cut(s) 234, 383
Hpy188III TCNNGA 3 cut(s) 53, 125, 188
Hpy8I GTNNAC 4 cut(s) 88, 179, 307, 361
Hpy99I CGWCG 3 cut(s) 183, 323, 374
HpyAV CCTTC 3 cut(s) 125, 146, 323
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 1 cut(s) 8
Hsp92II CATG 2 cut(s) 200, 359
Kzo9I GATC 1 cut(s) 337
LpnPI CCDG 2 cut(s) 110, 194
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 339
MbiI CCGCTC 1 cut(s) 276
MboI GATC 1 cut(s) 337
MboII GAAGA 6 cut(s) 140, 161, 286, 337, 340, 347
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 1 cut(s) 61
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 5 cut(s) 149, 155, 176, 220, 232
Mva1269I GAATGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 196
NdeII GATC 1 cut(s) 337
NlaIII CATG 2 cut(s) 200, 359
NlaIV GGNNCC 2 cut(s) 204, 231
NmuCI GTSAC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 2 cut(s) 184, 318
PctI GAATGC 1 cut(s) 10
PflFI GACNNNGTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 204, 231
PspPI GGNCC 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 183
SalI GTCGAC 1 cut(s) 177
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 205
SetI ASST 5 cut(s) 118, 141, 157, 166, 187
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 61
SsiI CCGC 4 cut(s) 94, 224, 263, 276
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 4 cut(s) 141, 173, 178, 187
TasI AATT 1 cut(s) 61
TauI GCSGC 1 cut(s) 266
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 17, 260, 344
Tth111I GACNNNGTC 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.