Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Forward (+)

5423246 .. 5425984

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08220.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTTGTTCGGAAAGCGTGGGAAGAGTGGTTTGGTTGCCTTGAATCTTGATTTTGCTCAAGTTGTCGACTTTGTGAAGGAGCGCCTGGGCAAAGAGGTTGAAATGGGTGGCTGCAAAGGACCCATAACAACATTCATTGTTGAACCCTTCATTCCCCACAATGAAGAGTTTTATCTTAATATCGTCTCAGACCGACTTGGAAACAGCATAAGCTTCTCAGAGTGTGGAGGAATTGATATTGAGGAGAACTGGGATAAGGTTAAGACCATATTTGTCCCTACTGGAGTTGCTTTTACATCAGAAGTTTCTGCTCCACTTGTTGCAACCCTTCCCTTGGAGATCAAAGCAGAACTTGAGGACTTTATCAAAGCCGTATTTGCTCTATTTCAAGATTTGGACTTCACTTTTCTGGAGATGAATCCTTTTGCATTGGTTGATGGAAAGCCATATCCTTTGGATATGAGAGGCGAGCTGGATGACACTGCTGCTTTCAAGAACTTCAAAAAGTGGGGCAGTATTGAATTTCCAATGCCTTTTGGAAGAGTTATGAGTCCTACAGAGAAATTTATTCATGGGCTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTTCTGAACCCAAAGGGACGAATTTGGACTATGGTTGCTGGAGGAGGTGCAAGTGTCATCTACGCAGACACGGTTGGAGATCTTTGCTTTGCTGATGAGCTTGGAAACTACGCCGAATACAGTGGAGCACCCAATGAAGAGGAGGTGTTGCAGTACGCCAGAGTTGTGATTGATTGTGCAACTTCTGACCCTGACGGCCGCAAGAGAGCCCTTGTAATTGGAGGAGGTATTGCTAACTTTACCGATGTAGCTGCAACATTCAATGGCATTATTCGTGCCTTGAAGGAGAAGGAATCTAAGCTTAAAGCCGCACAGATGCATCTTTACGTCAGGAGAGGAGGCCCTAACTACCAGAGGGGGCTTGCAAAAATGCGGGCACTTGCAGAGGAAATCGGCCTCCCTATTGAGGTCTATGGACCCGAAGCAACAATGACCGGTATTTGCAAACAGGCAATTCAGTGTATCTCCGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

364

Amino Acids

39.69

Weight (kDa)

5.01

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	4 cut(s)	811, 921, 985, 1080
AcoI	YGGCCR	1 cut(s)	808
AcsI	RAATTY	4 cut(s)	521, 563, 605, 633
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	2 cut(s)	334, 1018
AgeI	ACCGGT	1 cut(s)	1046
AjnI	CCWGG	1 cut(s)	84
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	5 cut(s)	213, 472, 712, 863, 913
AluI	AGCT	5 cut(s)	213, 472, 712, 863, 913
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	1 cut(s)	190
AoxI	GGCC	3 cut(s)	808, 952, 1006
ApeKI	GCWGC	5 cut(s)	111, 485, 863, 1082, 1085
ApoI	RAATTY	4 cut(s)	521, 563, 605, 633
AsiGI	ACCGGT	1 cut(s)	1046
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	119, 953, 1028
AvaII	GGWCC	2 cut(s)	119, 1028
BaeGI	GKGCMC	1 cut(s)	991
BanII	GRGCYC	1 cut(s)	823
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	5 cut(s)	98, 472, 850, 1069, 1072
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	2 cut(s)	356, 823
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	1 cut(s)	85
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	7 cut(s)	112, 486, 811, 864, 921, 1083, 1086
BlsI	GCNGC	7 cut(s)	113, 487, 812, 865, 922, 1084, 1087
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	2 cut(s)	119, 1028
BmgT120I	GGNCC	3 cut(s)	119, 953, 1028
BmiI	GGNNCC	2 cut(s)	121, 1030
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	259
BmsI	GCATC	3 cut(s)	605, 918, 940
BmuI	ACTGGG	1 cut(s)	259
BpmI	CTGGAG	3 cut(s)	303, 431, 672
BpuEI	CTTGAG	2 cut(s)	42, 374
BsaJI	CCNNGG	2 cut(s)	85, 333
BsaWI	WCCGGW	1 cut(s)	1046
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 1018
Bse118I	RCCGGY	1 cut(s)	1046
Bse1I	ACTGG	2 cut(s)	254, 286
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	85, 333
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	334, 1018
BseMII	CTCAG	2 cut(s)	201, 231
BseNI	ACTGG	2 cut(s)	254, 286
BseRI	GAGGAG	5 cut(s)	257, 669, 767, 849, 963
BseSI	GKGCMC	1 cut(s)	991
BseX3I	CGGCCG	1 cut(s)	808
BseXI	GCAGC	5 cut(s)	98, 472, 850, 1069, 1072
Bsh1285I	CGRYCG	1 cut(s)	811
BshFI	GGCC	3 cut(s)	810, 954, 1008
BshTI	ACCGGT	1 cut(s)	1046
BsiEI	CGRYCG	1 cut(s)	811
BsiHKAI	GWGCWC	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	1047
BslFI	GGGAC	2 cut(s)	260, 642
BslI	CCNNNNNNNGG	2 cut(s)	334, 1018
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	2 cut(s)	260, 642
BsnI	GGCC	3 cut(s)	810, 954, 1008
Bsp1286I	GDGCHC	3 cut(s)	742, 823, 991
Bsp143I	GATC	2 cut(s)	339, 691
BspACI	CCGC	4 cut(s)	811, 921, 985, 1080
BspANI	GGCC	3 cut(s)	810, 954, 1008
BspCNI	CTCAG	2 cut(s)	200, 230
BspLI	GGNNCC	2 cut(s)	121, 1030
BsrFI	RCCGGY	1 cut(s)	1046
BsrI	ACTGG	2 cut(s)	254, 286
BssAI	RCCGGY	1 cut(s)	1046
BssECI	CCNNGG	2 cut(s)	85, 333
BssMI	GATC	2 cut(s)	339, 691
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	613, 685, 734
Bst6I	CTCTTC	4 cut(s)	17, 159, 535, 744
BstC8I	GCNNGC	3 cut(s)	470, 975, 987
BstDEI	CTNAG	3 cut(s)	187, 217, 909
BstF5I	GGATG	1 cut(s)	481
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	342, 694
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	339, 691
BstMCI	CGRYCG	1 cut(s)	811
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	991
BstV1I	GCAGC	5 cut(s)	98, 472, 850, 1069, 1072
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BstZI	CGGCCG	1 cut(s)	808
BsuRI	GGCC	3 cut(s)	810, 954, 1008
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	480, 739, 1076
Cac8I	GCNNGC	3 cut(s)	470, 975, 987
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	1046
Cfr13I	GGNCC	3 cut(s)	119, 953, 1028
Csp6I	GTAC	1 cut(s)	766
CspAI	ACCGGT	1 cut(s)	1046
CviAII	CATG	1 cut(s)	572
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	3 cut(s)	187, 217, 909
DpnI	GATC	2 cut(s)	341, 693
DpnII	GATC	2 cut(s)	339, 691
EaeI	YGGCCR	1 cut(s)	808
EagI	CGGCCG	1 cut(s)	808
Eam1104I	CTCTTC	4 cut(s)	17, 159, 535, 744
EarI	CTCTTC	4 cut(s)	17, 159, 535, 744
EclXI	CGGCCG	1 cut(s)	808
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	823
Eco47I	GGWCC	2 cut(s)	119, 1028
Eco52I	CGGCCG	1 cut(s)	808
EcoO109I	RGGNCCY	2 cut(s)	119, 953
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	933
EcoT38I	GRGCYC	1 cut(s)	823
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	1 cut(s)	575
FalI	AAGNNNNNCTT	4 cut(s)	336, 368, 583, 615
FaqI	GGGAC	2 cut(s)	260, 642
FatI	CATG	1 cut(s)	571
FauI	CCCGC	1 cut(s)	978
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	7 cut(s)	112, 486, 811, 864, 921, 1083, 1086
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	1 cut(s)	823
Fsp4HI	GCNGC	7 cut(s)	112, 486, 811, 864, 921, 1083, 1086
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	7 cut(s)	112, 486, 811, 864, 921, 1083, 1086
GsuI	CTGGAG	3 cut(s)	303, 431, 672
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	810, 954, 1008
HapII	CCGG	1 cut(s)	1047
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	575
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	2 cut(s)	211, 911
HinfI	GANTC	4 cut(s)	43, 418, 550, 905
HpaII	CCGG	1 cut(s)	1047
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	6 cut(s)	11, 190, 220, 301, 618, 799
Hpy188III	TCNNGA	5 cut(s)	47, 389, 410, 493, 943
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	5 cut(s)	70, 157, 338, 889, 895
HpyCH4III	ACNGT	3 cut(s)	613, 685, 734
HpyCH4IV	ACGT	1 cut(s)	939
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	187, 217, 909
HpySE526I	ACGT	1 cut(s)	939
Hsp92II	CATG	1 cut(s)	575
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	339, 691
LmnI	GCTCC	3 cut(s)	79, 316, 737
Lsp1109I	GCAGC	5 cut(s)	98, 472, 850, 1069, 1072
LweI	GCATC	3 cut(s)	605, 918, 940
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	939
MalI	GATC	2 cut(s)	341, 693
MboI	GATC	2 cut(s)	339, 691
MboII	GAAGA	4 cut(s)	34, 176, 552, 761
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	3 cut(s)	742, 823, 991
MluCI	AATT	7 cut(s)	231, 521, 563, 605, 633, 828, 1065
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	1 cut(s)	667
Mph1103I	ATGCAT	1 cut(s)	933
MseI	TTAA	3 cut(s)	177, 261, 915
MspA1I	CMGCKG	1 cut(s)	1082
MspI	CCGG	1 cut(s)	1047
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	2 cut(s)	339, 691
NlaIII	CATG	1 cut(s)	575
NlaIV	GGNNCC	2 cut(s)	121, 1030
NsiI	ATGCAT	1 cut(s)	933
PfeI	GAWTC	3 cut(s)	43, 418, 905
PinAI	ACCGGT	1 cut(s)	1046
PkrI	GCNGC	7 cut(s)	113, 487, 812, 865, 922, 1084, 1087
PleI	GAGTC	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	558
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	121, 1030
PspPI	GGNCC	3 cut(s)	119, 953, 1028
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	177, 261, 915
SatI	GCNGC	7 cut(s)	112, 486, 811, 864, 921, 1083, 1086
Sau3AI	GATC	2 cut(s)	339, 691
Sau96I	GGNCC	3 cut(s)	119, 953, 1028
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	3 cut(s)	742, 823, 991
SfaNI	GCATC	3 cut(s)	605, 918, 940
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	2 cut(s)	119, 1028
SmlI	CTYRAG	2 cut(s)	57, 353
SmoI	CTYRAG	2 cut(s)	57, 353
Sse9I	AATT	7 cut(s)	231, 521, 563, 605, 633, 828, 1065
SsiI	CCGC	4 cut(s)	811, 921, 985, 1080
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	613, 685, 734
TaiI	ACGT	1 cut(s)	942
TaqI	TCGA	1 cut(s)	66
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	7 cut(s)	231, 521, 563, 605, 633, 828, 1065
TauI	GCSGC	2 cut(s)	813, 923
TfiI	GAWTC	3 cut(s)	43, 418, 905
Tru1I	TTAA	3 cut(s)	177, 261, 915
Tru9I	TTAA	3 cut(s)	177, 261, 915
TscAI	CASTG	3 cut(s)	487, 739, 1076
TseI	GCWGC	5 cut(s)	111, 485, 863, 1082, 1085
TspDTI	ATGAA	7 cut(s)	124, 139, 177, 431, 560, 597, 762
TspRI	CASTG	3 cut(s)	487, 739, 1076
VpaK11BI	GGWCC	2 cut(s)	119, 1028
XapI	RAATTY	4 cut(s)	521, 563, 605, 633
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	1 cut(s)	578
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.