MD16G1096300.v1.1

ATP-citrate synthase alpha chain protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
6695050 .. 6698827
3778 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1096300.v1.1.491

Sequence Viewer

Length: 1272 bp
ATGGCACGTAAGAAGATCAGAGAGTACGACTCCAAGAGATTGTTGAAGGAGCACTTCAAGAGGCTCGCCGGCCGTGAATTGCCCCTTAAATCTGCCCAGATTACCGAAACAACCGATGTCAATGAGCTGCTGGAGAAGGAATCGTGGCTTTCATCTTCCAAACTCGTTGTCAAGCCTGACATGTTGTTCGGAAAGCGTGGGAAGAGCGGTTTGGTTGCCTTGAATCTTGATTTTGCTCAAGTTGTCGACTTTGTGAAGGAGCGCCTGGGCAAGGAGGTTGAGATGGGTGGCTGCAAAGGACCCATAACAACATTCATTGTTGAACCCTTCATTCCCCACAATGAAGAGTTTTACCTTAACATCGTCTCAGACCGACTTGGAAACAGCATAAGCTTCTCCGAGTGTGGAGGAATTGATATTGAGGAGAACTGGGATAAGGTTAAGACCATATTTGTCCCTACTGGAGTTGCTTTTACATCAGAAGTTTCTGCTCCACTTGTTGCAACCCTTCCCTTGGAGATCAAAGCAGAACTTGAGGACTTTATCAAAGCCGTATTTGCTCTATTTCAAGATTTGGACTTCACTTTTCTGGAGATGAATCCTTTTGCATTGGTTGATGGAAAGCCATATCCTTTGGATATGAGAGGCGAGCTGGATGACACTGCTGCTTTCAAGAACTTCAAAAAGTGGGGCAGTATTGAATTTCCAATGCCTTTTGGAAGAGTTATGAGTCCTACAGAGAAATTTATTCACGGGCTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTTCTGAACCCAAAGGGACGAATTTGGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTATGCAGACACGGTTGGAGATCTTGGCTTTGCTGATGAGCTTGGAAACTACGCCGAATACAGTGGAGCACCCAATGAAGAGGAGGTGTTGCAGTACGCCAGAGTTGTGATTGATTGTGCAACTTCTGACCCTGACGGCCGCAAGAGAGCCCTTGTAATTGGAGGAGGTATTGCTAACTTTACCGATGTAGCTGCAACATTCAATGGCATTATTCGTGCCTTGAAGGAGAAGGAATCTAAGCTTAAAGCCGCACAGATGCATCTTTACGTCAGGAGAGGAGGCCCTAACTACCAGAGGGGGCTTGCAAAAATGCGGGCACTTGCAGAGGAAATCGGCCTCCCTATTGAGGTCTATGGACCCGAAGCAACAATGACCGGTATTTGCAAACAGGCAATTCAGTGCATCTCCGCTGCTGCATAA

Protein Analysis

424

Amino Acids

46.66

Weight (kDa)

5.47

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Citrate_synth_N PF24948 2 - 230 2.3e-74 ATP-citrate synthase ATP-grasp domain
ATP-grasp_2 PF08442 6 - 203 4.9e-17 ATP-grasp domain
Citrate_bind PF16114 241 - 417 3e-84 ATP citrate lyase citrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 246
AciI CCGC 5 cut(s) 207, 991, 1101, 1165, 1260
AcoI YGGCCR 2 cut(s) 70, 988
AcsI RAATTY 4 cut(s) 701, 743, 785, 813
AfaI GTAC 2 cut(s) 26, 947
AfiI CCNNNNNNNGG 3 cut(s) 271, 514, 1198
AflIII ACRYGT 1 cut(s) 180
AgeI ACCGGT 1 cut(s) 1226
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 6 cut(s) 127, 393, 652, 892, 1043, 1093
AluI AGCT 6 cut(s) 127, 393, 652, 892, 1043, 1093
Alw21I GWGCWC 2 cut(s) 54, 922
Alw26I GTCTC 1 cut(s) 370
AoxI GGCC 4 cut(s) 70, 988, 1132, 1186
ApeKI GCWGC 6 cut(s) 127, 291, 665, 1043, 1262, 1265
ApoI RAATTY 4 cut(s) 701, 743, 785, 813
ArsI GACNNNNNNTTYG 4 cut(s) 153, 170, 185, 202
AsiGI ACCGGT 1 cut(s) 1226
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 3 cut(s) 299, 1133, 1208
AvaII GGWCC 2 cut(s) 299, 1208
BaeGI GKGCMC 1 cut(s) 1171
BanII GRGCYC 1 cut(s) 1003
Bbv12I GWGCWC 2 cut(s) 54, 922
BbvI GCAGC 6 cut(s) 114, 278, 652, 1030, 1249, 1252
BccI CCATC 2 cut(s) 277, 611
BceAI ACGGC 3 cut(s) 57, 536, 1003
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciT130I CCWGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 1 cut(s) 735
BfoI RGCGCY 1 cut(s) 265
BglII AGATCT 1 cut(s) 871
BisI GCNGC 8 cut(s) 128, 292, 666, 991, 1044, 1101, 1263, 1266
BlsI GCNGC 8 cut(s) 129, 293, 667, 992, 1045, 1102, 1264, 1267
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 2 cut(s) 299, 1208
BmgT120I GGNCC 3 cut(s) 299, 1133, 1208
BmiI GGNNCC 2 cut(s) 301, 1210
BmrFI CCNGG 1 cut(s) 266
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 4 cut(s) 785, 1098, 1120, 1263
BmuI ACTGGG 1 cut(s) 439
BoxI GACNNNNGTC 1 cut(s) 824
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 4 cut(s) 152, 483, 611, 852
BpuEI CTTGAG 2 cut(s) 222, 554
BsaAI YACGTR 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 265, 513
BsaWI WCCGGW 1 cut(s) 1226
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 514, 1198
Bse118I RCCGGY 2 cut(s) 68, 1226
Bse1I ACTGG 2 cut(s) 434, 466
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 265, 513
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 3 cut(s) 271, 514, 1198
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 434, 466
BseRI GAGGAG 5 cut(s) 437, 849, 947, 1029, 1143
BseSI GKGCMC 1 cut(s) 1171
BseX3I CGGCCG 2 cut(s) 70, 988
BseXI GCAGC 6 cut(s) 114, 278, 652, 1030, 1249, 1252
Bsh1285I CGRYCG 2 cut(s) 73, 991
BshFI GGCC 4 cut(s) 72, 990, 1134, 1188
BshTI ACCGGT 1 cut(s) 1226
BsiEI CGRYCG 2 cut(s) 73, 991
BsiHKAI GWGCWC 2 cut(s) 54, 922
BsiSI CCGG 2 cut(s) 69, 1227
BslFI GGGAC 2 cut(s) 440, 822
BslI CCNNNNNNNGG 3 cut(s) 271, 514, 1198
BsmAI GTCTC 1 cut(s) 370
BsmBI CGTCTC 1 cut(s) 370
BsmFI GGGAC 2 cut(s) 440, 822
BsnI GGCC 4 cut(s) 72, 990, 1134, 1188
Bsp1286I GDGCHC 4 cut(s) 54, 922, 1003, 1171
Bsp143I GATC 3 cut(s) 15, 519, 871
BspACI CCGC 5 cut(s) 207, 991, 1101, 1165, 1260
BspANI GGCC 4 cut(s) 72, 990, 1134, 1188
BspCNI CTCAG 1 cut(s) 380
BspLI GGNNCC 2 cut(s) 301, 1210
BspQI GCTCTTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 2 cut(s) 68, 1226
BsrI ACTGG 2 cut(s) 434, 466
BssAI RCCGGY 2 cut(s) 68, 1226
BssECI CCNNGG 2 cut(s) 265, 513
BssMI GATC 3 cut(s) 15, 519, 871
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 3 cut(s) 793, 865, 914
Bst6I CTCTTC 4 cut(s) 197, 339, 715, 924
BstBAI YACGTR 1 cut(s) 8
BstC8I GCNNGC 5 cut(s) 66, 70, 650, 1155, 1167
BstDEI CTNAG 2 cut(s) 367, 1089
BstENI CCTNNNNNAGG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 661
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 3 cut(s) 18, 522, 874
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 3 cut(s) 15, 519, 871
BstMCI CGRYCG 2 cut(s) 73, 991
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 184
BstPAI GACNNNNGTC 1 cut(s) 824
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 1171
BstV1I GCAGC 6 cut(s) 114, 278, 652, 1030, 1249, 1252
BstX2I RGATCY 1 cut(s) 871
BstYI RGATCY 1 cut(s) 871
BstZI CGGCCG 2 cut(s) 70, 988
BsuRI GGCC 4 cut(s) 72, 990, 1134, 1188
BtsCI GGATG 1 cut(s) 661
BtsI GCAGTG 1 cut(s) 660
BtsIMutI CAGTG 3 cut(s) 660, 919, 1256
Cac8I GCNNGC 5 cut(s) 66, 70, 650, 1155, 1167
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 2 cut(s) 68, 1226
Cfr13I GGNCC 3 cut(s) 299, 1133, 1208
Csp6I GTAC 2 cut(s) 25, 946
CspAI ACCGGT 1 cut(s) 1226
CviAII CATG 1 cut(s) 181
CviQI GTAC 2 cut(s) 25, 946
DdeI CTNAG 2 cut(s) 367, 1089
DpnI GATC 3 cut(s) 17, 521, 873
DpnII GATC 3 cut(s) 15, 519, 871
EaeI YGGCCR 2 cut(s) 70, 988
EagI CGGCCG 2 cut(s) 70, 988
Eam1104I CTCTTC 4 cut(s) 197, 339, 715, 924
EarI CTCTTC 4 cut(s) 197, 339, 715, 924
EclXI CGGCCG 2 cut(s) 70, 988
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 1003
Eco47I GGWCC 2 cut(s) 299, 1208
Eco52I CGGCCG 2 cut(s) 70, 988
EcoNI CCTNNNNNAGG 1 cut(s) 269
EcoO109I RGGNCCY 2 cut(s) 299, 1133
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 1113
EcoT38I GRGCYC 1 cut(s) 1003
ErhI CCWWGG 1 cut(s) 513
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 1 cut(s) 184
FalI AAGNNNNNCTT 6 cut(s) 38, 70, 516, 548, 763, 795
FaqI GGGAC 2 cut(s) 440, 822
FatI CATG 1 cut(s) 180
FauI CCCGC 1 cut(s) 1158
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 8 cut(s) 128, 292, 666, 991, 1044, 1101, 1263, 1266
FokI GGATG 1 cut(s) 668
FriOI GRGCYC 1 cut(s) 1003
Fsp4HI GCNGC 8 cut(s) 128, 292, 666, 991, 1044, 1101, 1263, 1266
FspBI CTAG 1 cut(s) 758
GlaI GCGC 1 cut(s) 263
GluI GCNGC 8 cut(s) 128, 292, 666, 991, 1044, 1101, 1263, 1266
GsuI CTGGAG 4 cut(s) 152, 483, 611, 852
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 4 cut(s) 72, 990, 1134, 1188
HapII CCGG 2 cut(s) 69, 1227
HhaI GCGC 1 cut(s) 264
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 2 cut(s) 391, 1091
HinfI GANTC 6 cut(s) 29, 140, 223, 598, 730, 1085
HpaII CCGG 2 cut(s) 69, 1227
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 7 cut(s) 20, 191, 370, 400, 481, 798, 979
Hpy188III TCNNGA 6 cut(s) 58, 227, 569, 590, 673, 1123
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 7 cut(s) 40, 130, 250, 337, 518, 1069, 1075
HpyCH4III ACNGT 3 cut(s) 793, 865, 914
HpyCH4IV ACGT 2 cut(s) 7, 1119
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 2 cut(s) 367, 1089
HpySE526I ACGT 2 cut(s) 7, 1119
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 15, 519, 871
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 4 cut(s) 49, 259, 496, 917
Lsp1109I GCAGC 6 cut(s) 114, 278, 652, 1030, 1249, 1252
LweI GCATC 4 cut(s) 785, 1098, 1120, 1263
MaeI CTAG 1 cut(s) 758
MaeII ACGT 2 cut(s) 7, 1119
MalI GATC 3 cut(s) 17, 521, 873
MbiI CCGCTC 1 cut(s) 207
MboI GATC 3 cut(s) 15, 519, 871
MboII GAAGA 6 cut(s) 25, 147, 214, 356, 732, 941
MflI RGATCY 1 cut(s) 871
MhlI GDGCHC 4 cut(s) 54, 922, 1003, 1171
MluCI AATT 8 cut(s) 77, 411, 701, 743, 785, 813, 1008, 1245
MlyI GAGTC 2 cut(s) 23, 739
MmeI TCCRAC 1 cut(s) 847
Mph1103I ATGCAT 1 cut(s) 1113
MroNI GCCGGC 1 cut(s) 68
MseI TTAA 4 cut(s) 87, 357, 441, 1095
MspA1I CMGCKG 1 cut(s) 1262
MspI CCGG 2 cut(s) 69, 1227
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 557
NaeI GCCGGC 1 cut(s) 70
NdeII GATC 3 cut(s) 15, 519, 871
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 301, 1210
NsiI ATGCAT 1 cut(s) 1113
NspI RCATGY 1 cut(s) 184
PciI ACATGT 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 4 cut(s) 140, 223, 598, 1085
PinAI ACCGGT 1 cut(s) 1226
PkrI GCNGC 8 cut(s) 129, 293, 667, 992, 1045, 1102, 1264, 1267
PleI GAGTC 2 cut(s) 23, 738
PpsI GAGTC 2 cut(s) 23, 738
Ppu21I YACGTR 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 299
PscI ACATGT 1 cut(s) 180
PshAI GACNNNNGTC 1 cut(s) 824
Psp5II RGGWCCY 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 301, 1210
PspPI GGNCC 3 cut(s) 299, 1133, 1208
PspPPI RGGWCCY 1 cut(s) 299
PsuI RGATCY 1 cut(s) 871
RsaI GTAC 2 cut(s) 26, 947
RsaNI GTAC 2 cut(s) 25, 946
SalI GTCGAC 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 87, 357, 441, 1095
SatI GCNGC 8 cut(s) 128, 292, 666, 991, 1044, 1101, 1263, 1266
Sau3AI GATC 3 cut(s) 15, 519, 871
Sau96I GGNCC 3 cut(s) 299, 1133, 1208
SchI GAGTC 2 cut(s) 23, 739
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 4 cut(s) 54, 922, 1003, 1171
SfaNI GCATC 4 cut(s) 785, 1098, 1120, 1263
SfcI CTRYAG 1 cut(s) 735
SinI GGWCC 2 cut(s) 299, 1208
SmlI CTYRAG 2 cut(s) 237, 533
SmoI CTYRAG 2 cut(s) 237, 533
Sse9I AATT 8 cut(s) 77, 411, 701, 743, 785, 813, 1008, 1245
SsiI CCGC 5 cut(s) 207, 991, 1101, 1165, 1260
SspMI CTAG 1 cut(s) 758
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 3 cut(s) 793, 865, 914
TaiI ACGT 2 cut(s) 10, 1122
TaqI TCGA 1 cut(s) 246
TaqII GACCGA 1 cut(s) 387
TasI AATT 8 cut(s) 77, 411, 701, 743, 785, 813, 1008, 1245
TauI GCSGC 2 cut(s) 993, 1103
TfiI GAWTC 4 cut(s) 140, 223, 598, 1085
Tru1I TTAA 4 cut(s) 87, 357, 441, 1095
Tru9I TTAA 4 cut(s) 87, 357, 441, 1095
TscAI CASTG 3 cut(s) 667, 919, 1256
TseI GCWGC 6 cut(s) 127, 291, 665, 1043, 1262, 1265
TspDTI ATGAA 7 cut(s) 141, 304, 319, 357, 611, 777, 942
TspRI CASTG 3 cut(s) 667, 919, 1256
VpaK11BI GGWCC 2 cut(s) 299, 1208
XagI CCTNNNNNAGG 1 cut(s) 269
XapI RAATTY 4 cut(s) 701, 743, 785, 813
XceI RCATGY 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 1 cut(s) 758
Zsp2I ATGCAT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.