Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002735

Physical Location & Seq

Genomic Coordinates Reverse (-)

26226155 .. 26230236

Gene Structure 4082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G250100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGCACGCAAGAAGATCAGAGAGTACGACTCCAAGAGGTTGTTGAAGGAACACTTCAAGAGATTCGGTGGCCGTGAATTGCCCCTTAAATCAGCCCAAATTACTGAATCAACCGATCTCAATGAGCTAGTTGAGAAGGAATCTTGGCTTTCATCTTCCAAACTGGTTGTGAAACCTGACATGTTGTTTGGAAAGCGTGGGAAGAGTGGTTTGGTTGCTTTGAACCTTGACTTCGCTCAAGTTGCCACCTTTGTGAAGGAGCGCCTTGGCAAAGAGGTGGAGATGGGTGGTTGCAAAGGACCCATAACAACATTCATTGTTGAACCCTTCATTCCCCACAATGAGGAGTTTTACCTTAATATTGTCTCAGACCGACTTGGGAACAGCATAAGCTTCTCCGAGTGTGGAGGAATTGATATTGAGGAGAACTGGGATAAGGTCAAGACCATATTTGTCCCTACAGGAACTCCTTTCACATCAGAAGTATCTGCACCACTTGTTGCAACCCTTCCCTTGGAGATCAAAGGAGAACTTGAGGACTTTATCAAAGTCGTTTTTACTCTATTTCAAGATCTGGACTTCACTTTTCTGGAGATGAATCCTTTTGCACTGGTTGATGGAAAGCCATATCCTTTGGATATGAGAGGCGAGCTGGATGACACTGCTGCTTTCAAGAACTTCAAAAAGTGGGGCAGTATTGAATTTCCAATGCCATTTGGAAGGGTTATGAGTTCTACAGAAAAATTTATTCATGGCCTGGATGAAAAGACTAGTGCATCTTTGAAATTCACAGTTCTCAACCCAAAGGGACGAATTTGGACTATGGTAGCTGGAGGAGGTGCAAGTGTCATCTATGCAGACACGGTTGGAGATCTTGGCTTTGCTGATGAACTTGGAAACTATGCCGAATACAGTGGAGCACCTAATGAAGAGGAGGTATTGCAGTATGCCAGAGTTGTGATTGATTGTGCAACGTCAGACCCTGATGGCCGTAAGAGAGCCCTTGTAATTGGAGGAGGAATAGCTAACTTTACCGATGTAGCTGCAACATTCAATGGTATCATTCGAGCCTTGAAGGAGAAGGAATCAAAGCTTAAAGCCGCAAGGATGCATCTCTATGTCAGGAGAGGAGGTCCCAACTACCAGAGGGGCCTCGCAAAAATGCGGGCACTTGGAGAGGAAATCGGCATCCCAATTGAGGTCTATGGACCCGAAGCAACAATGACCGGTATTTGCAAACAGGCAATTCAGTGCATCAGTGTTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006629 GO:0006631 GO:0006633 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046394 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

ATP-grasp_2 Citrate_bind

Protein Analysis

424

Amino Acids

46.73

Weight (kDa)

5.7

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10670 AT1G10670 AT1G10670 AT1G10670 AT1G60810 AT1G60810
fragaria_vesca	FvH4_4g32950 FvH4_4g32950 FvH4_4g32950
malus_domestica	MD13G1095200.v1.1 MD16G1096300.v1.1
prunus_persica	Prupe.1G250100_v2.0.a1 Prupe.1G250100_v2.0.a1
pyrus_communis	pycom05g10590 pycom13g08300 pycom16g08220
rosa_chinensis	RchiOBHm_Chr4g0441981 RchiOBHm_Chr7g0181761
rosa_laevigata	RLG00000006053 RLG00000018726
rosa_multiflora	Rmu_co8081680.1_g000001 Rmu_sc0000905.1_g000020
rosa_roxburghii	Rroxscaffold_1G00051200 Rroxscaffold_5G00359300 Rroxscaffold_5G00382850
rosa_rugosa	Rorug04G0337500 Rorug04G0337500 Rorug04G0337500
rosa_samantha	Rh2BG270200 Rh4AG389500 Rh4BG402900 Rh4CG418100 Rh4DG118600 Rh4DG396000 Rh7AG279300 Rh7CG298400 Rh7DG045400
rosa_wichuraiana	Rw4G033630 Rw6G021030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	1101, 1165
AcoI	YGGCCR	2 cut(s)	70, 988
AcsI	RAATTY	4 cut(s)	701, 743, 785, 813
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	343, 514, 1198
AflIII	ACRYGT	1 cut(s)	180
AgeI	ACCGGT	1 cut(s)	1226
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	756
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	7 cut(s)	127, 393, 652, 830, 1025, 1043, 1093
AluI	AGCT	7 cut(s)	127, 393, 652, 830, 1025, 1043, 1093
Alw21I	GWGCWC	1 cut(s)	922
Alw26I	GTCTC	1 cut(s)	370
AlwNI	CAGNNNCTG	1 cut(s)	983
AoxI	GGCC	4 cut(s)	70, 754, 988, 1150
ApeKI	GCWGC	3 cut(s)	665, 1043, 1265
ApoI	RAATTY	4 cut(s)	701, 743, 785, 813
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AsiGI	ACCGGT	1 cut(s)	1226
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	4 cut(s)	299, 1133, 1150, 1208
AvaII	GGWCC	3 cut(s)	299, 1133, 1208
BaeGI	GKGCMC	1 cut(s)	1171
BanII	GRGCYC	1 cut(s)	1003
Bbv12I	GWGCWC	1 cut(s)	922
BbvI	GCAGC	3 cut(s)	652, 1030, 1252
BccI	CCATC	3 cut(s)	277, 611, 980
BceAI	ACGGC	2 cut(s)	57, 975
BcgI	CGANNNNNNTGC	2 cut(s)	1025, 1059
BciT130I	CCWGG	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	370
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	2 cut(s)	128, 771
BfmI	CTRYAG	2 cut(s)	459, 735
BfoI	RGCGCY	1 cut(s)	265
BglII	AGATCT	2 cut(s)	571, 871
BisI	GCNGC	4 cut(s)	666, 1044, 1101, 1266
BlsI	GCNGC	4 cut(s)	667, 1045, 1102, 1267
Bme1390I	CCNGG	1 cut(s)	758
Bme18I	GGWCC	3 cut(s)	299, 1133, 1208
BmgT120I	GGNCC	4 cut(s)	299, 1133, 1150, 1208
BmiI	GGNNCC	4 cut(s)	301, 1135, 1151, 1210
BmrFI	CCNGG	1 cut(s)	758
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	5 cut(s)	785, 1098, 1120, 1197, 1263
BmuI	ACTGGG	1 cut(s)	439
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	2 cut(s)	611, 852
BpuEI	CTTGAG	2 cut(s)	222, 554
BsaJI	CCNNGG	2 cut(s)	265, 513
BsaWI	WCCGGW	1 cut(s)	1226
BsaXI	ACNNNNNCTCC	4 cut(s)	451, 481, 1117, 1147
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 514, 1198
Bse118I	RCCGGY	1 cut(s)	1226
Bse1I	ACTGG	3 cut(s)	168, 434, 615
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	2 cut(s)	265, 513
BseGI	GGATG	4 cut(s)	661, 766, 1113, 1188
BseLI	CCNNNNNNNGG	3 cut(s)	343, 514, 1198
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	3 cut(s)	168, 434, 615
BseRI	GAGGAG	6 cut(s)	359, 437, 849, 947, 1029, 1143
BseSI	GKGCMC	1 cut(s)	1171
BseXI	GCAGC	3 cut(s)	652, 1030, 1252
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	4 cut(s)	72, 756, 990, 1152
BshTI	ACCGGT	1 cut(s)	1226
BsiHKAI	GWGCWC	1 cut(s)	922
BsiSI	CCGG	1 cut(s)	1227
BslFI	GGGAC	3 cut(s)	440, 822, 1119
BslI	CCNNNNNNNGG	3 cut(s)	343, 514, 1198
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	3 cut(s)	440, 822, 1119
BsnI	GGCC	4 cut(s)	72, 756, 990, 1152
Bsp1286I	GDGCHC	3 cut(s)	922, 1003, 1171
Bsp143I	GATC	5 cut(s)	15, 115, 519, 571, 871
BspACI	CCGC	2 cut(s)	1101, 1165
BspANI	GGCC	4 cut(s)	72, 756, 990, 1152
BspCNI	CTCAG	1 cut(s)	380
BspLI	GGNNCC	4 cut(s)	301, 1135, 1151, 1210
BsrFI	RCCGGY	1 cut(s)	1226
BsrI	ACTGG	3 cut(s)	168, 434, 615
BssAI	RCCGGY	1 cut(s)	1226
BssECI	CCNNGG	2 cut(s)	265, 513
BssMI	GATC	5 cut(s)	15, 115, 519, 571, 871
BssT1I	CCWWGG	2 cut(s)	265, 513
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	3 cut(s)	793, 865, 914
Bst6I	CTCTTC	2 cut(s)	197, 924
BstC8I	GCNNGC	3 cut(s)	7, 650, 1167
BstDEI	CTNAG	1 cut(s)	367
BstF5I	GGATG	4 cut(s)	661, 766, 1113, 1188
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	5 cut(s)	18, 118, 522, 574, 874
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	5 cut(s)	15, 115, 519, 571, 871
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	758
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	756
BstSFI	CTRYAG	2 cut(s)	459, 735
BstSLI	GKGCMC	1 cut(s)	1171
BstV1I	GCAGC	3 cut(s)	652, 1030, 1252
BstX2I	RGATCY	2 cut(s)	571, 871
BstYI	RGATCY	2 cut(s)	571, 871
BsuRI	GGCC	4 cut(s)	72, 756, 990, 1152
BtsCI	GGATG	4 cut(s)	661, 766, 1113, 1188
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	5 cut(s)	608, 660, 919, 1256, 1264
Cac8I	GCNNGC	3 cut(s)	7, 650, 1167
CaiI	CAGNNNCTG	1 cut(s)	983
CfoI	GCGC	1 cut(s)	264
Cfr10I	RCCGGY	1 cut(s)	1226
Cfr13I	GGNCC	4 cut(s)	299, 1133, 1150, 1208
Csp6I	GTAC	1 cut(s)	25
CspAI	ACCGGT	1 cut(s)	1226
CviAII	CATG	2 cut(s)	181, 752
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	5 cut(s)	17, 117, 521, 573, 873
DpnII	GATC	5 cut(s)	15, 115, 519, 571, 871
EaeI	YGGCCR	2 cut(s)	70, 988
Eam1104I	CTCTTC	2 cut(s)	197, 924
EarI	CTCTTC	2 cut(s)	197, 924
Eco130I	CCWWGG	2 cut(s)	265, 513
Eco24I	GRGCYC	1 cut(s)	1003
Eco47I	GGWCC	3 cut(s)	299, 1133, 1208
EcoO109I	RGGNCCY	3 cut(s)	299, 1133, 1150
EcoRII	CCWGG	1 cut(s)	756
EcoT14I	CCWWGG	2 cut(s)	265, 513
EcoT22I	ATGCAT	1 cut(s)	1113
EcoT38I	GRGCYC	1 cut(s)	1003
ErhI	CCWWGG	2 cut(s)	265, 513
FaeI	CATG	2 cut(s)	184, 755
FalI	AAGNNNNNCTT	4 cut(s)	38, 70, 516, 548
FaqI	GGGAC	3 cut(s)	440, 822, 1119
FatI	CATG	2 cut(s)	180, 751
FauI	CCCGC	1 cut(s)	1158
Fnu4HI	GCNGC	4 cut(s)	666, 1044, 1101, 1266
FokI	GGATG	4 cut(s)	668, 773, 1120, 1175
FriOI	GRGCYC	1 cut(s)	1003
Fsp4HI	GCNGC	4 cut(s)	666, 1044, 1101, 1266
FspBI	CTAG	2 cut(s)	128, 771
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	4 cut(s)	666, 1044, 1101, 1266
GsuI	CTGGAG	2 cut(s)	611, 852
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	4 cut(s)	72, 756, 990, 1152
HapII	CCGG	1 cut(s)	1227
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	184, 755
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HindIII	AAGCTT	2 cut(s)	391, 1091
HinfI	GANTC	6 cut(s)	29, 63, 107, 140, 598, 1085
HpaII	CCGG	1 cut(s)	1227
Hpy188I	TCNGA	5 cut(s)	20, 370, 400, 481, 979
Hpy188III	TCNNGA	7 cut(s)	58, 442, 569, 575, 590, 673, 1123
HpyAV	CCTTC	8 cut(s)	40, 130, 250, 337, 518, 714, 1069, 1075
HpyCH4III	ACNGT	3 cut(s)	793, 865, 914
HpyCH4IV	ACGT	1 cut(s)	974
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	367
HpySE526I	ACGT	1 cut(s)	974
Hsp92II	CATG	2 cut(s)	184, 755
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	5 cut(s)	15, 115, 519, 571, 871
LmnI	GCTCC	2 cut(s)	259, 917
Lsp1109I	GCAGC	3 cut(s)	652, 1030, 1252
LweI	GCATC	5 cut(s)	785, 1098, 1120, 1197, 1263
MaeI	CTAG	2 cut(s)	128, 771
MaeII	ACGT	1 cut(s)	974
MalI	GATC	5 cut(s)	17, 117, 521, 573, 873
MboI	GATC	5 cut(s)	15, 115, 519, 571, 871
MboII	GAAGA	4 cut(s)	25, 147, 214, 941
MfeI	CAATTG	1 cut(s)	1194
MflI	RGATCY	2 cut(s)	571, 871
MhlI	GDGCHC	3 cut(s)	922, 1003, 1171
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	847
Mph1103I	ATGCAT	1 cut(s)	1113
MseI	TTAA	3 cut(s)	87, 357, 1095
MslI	CAYNNNNRTG	2 cut(s)	251, 1116
MspI	CCGG	1 cut(s)	1227
MspR9I	CCNGG	1 cut(s)	758
MunI	CAATTG	1 cut(s)	1194
MvaI	CCWGG	1 cut(s)	758
MwoI	GCNNNNNNNGC	1 cut(s)	242
NdeII	GATC	5 cut(s)	15, 115, 519, 571, 871
NlaIII	CATG	2 cut(s)	184, 755
NlaIV	GGNNCC	4 cut(s)	301, 1135, 1151, 1210
NsiI	ATGCAT	1 cut(s)	1113
NspI	RCATGY	1 cut(s)	184
OliI	CACNNNNGTG	1 cut(s)	251
PciI	ACATGT	1 cut(s)	180
PfeI	GAWTC	5 cut(s)	63, 107, 140, 598, 1085
PinAI	ACCGGT	1 cut(s)	1226
PkrI	GCNGC	4 cut(s)	667, 1045, 1102, 1267
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	2 cut(s)	299, 1133
PscI	ACATGT	1 cut(s)	180
Psp5II	RGGWCCY	2 cut(s)	299, 1133
Psp6I	CCWGG	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	4 cut(s)	301, 1135, 1151, 1210
PspPI	GGNCC	4 cut(s)	299, 1133, 1150, 1208
PspPPI	RGGWCCY	2 cut(s)	299, 1133
PstNI	CAGNNNCTG	1 cut(s)	983
PsuI	RGATCY	2 cut(s)	571, 871
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	2 cut(s)	251, 1116
SaqAI	TTAA	3 cut(s)	87, 357, 1095
SatI	GCNGC	4 cut(s)	666, 1044, 1101, 1266
Sau3AI	GATC	5 cut(s)	15, 115, 519, 571, 871
Sau96I	GGNCC	4 cut(s)	299, 1133, 1150, 1208
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	758
SduI	GDGCHC	3 cut(s)	922, 1003, 1171
SfaNI	GCATC	5 cut(s)	785, 1098, 1120, 1197, 1263
SfcI	CTRYAG	2 cut(s)	459, 735
SinI	GGWCC	3 cut(s)	299, 1133, 1208
SmiMI	CAYNNNNRTG	2 cut(s)	251, 1116
SmlI	CTYRAG	2 cut(s)	237, 533
SmoI	CTYRAG	2 cut(s)	237, 533
SpeI	ACTAGT	1 cut(s)	770
SsiI	CCGC	2 cut(s)	1101, 1165
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	128, 771
StyD4I	CCNGG	1 cut(s)	756
StyI	CCWWGG	2 cut(s)	265, 513
TaaI	ACNGT	3 cut(s)	793, 865, 914
TaiI	ACGT	1 cut(s)	977
TaqI	TCGA	1 cut(s)	1066
TaqII	GACCGA	1 cut(s)	387
TauI	GCSGC	1 cut(s)	1103
TfiI	GAWTC	5 cut(s)	63, 107, 140, 598, 1085
Tru1I	TTAA	3 cut(s)	87, 357, 1095
Tru9I	TTAA	3 cut(s)	87, 357, 1095
TscAI	CASTG	5 cut(s)	615, 667, 919, 1256, 1264
TseI	GCWGC	3 cut(s)	665, 1043, 1265
TspDTI	ATGAA	8 cut(s)	141, 304, 319, 611, 740, 777, 903, 942
TspRI	CASTG	5 cut(s)	615, 667, 919, 1256, 1264
VpaK11BI	GGWCC	3 cut(s)	299, 1133, 1208
XapI	RAATTY	4 cut(s)	701, 743, 785, 813
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	2 cut(s)	128, 771
Zsp2I	ATGCAT	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.