AT1G11020

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006633
Physical Location & Seq
Forward (+)
3676691 .. 3678567
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11020.1

Sequence Viewer

Length: 966 bp
ATGATGCAAGGTGAAGTACAATTGCAGCCACCGGATTCACAGAAACTAAGTGATTCCGCTCCTTTGTTAGGAGATCACACCAATTCTTCTTCGGCGTCTCCTTCTGCTGCGTCTGTGGTGGCAGGAAATAGCGATGAGATAAAGGCTGAAGAAGATTTAGAGAACGATGCTTCTTCAGCTCCTTGTTGTCGTATTTGTTTGGAGGACGATAGTGAATTGTTAGGCGATGAATTGATTTCACCTTGTATGTGTAAAGGCACTCAACAATTCGTGCATCGCTCATGTCTCGATCATTGGCGATCGGTTAAAGAAGGTTTTGCTTTCTCTCACTGTACTACTTGCAAAGCACAGTTTCATCTGAGAGTCGAACCCTTTGAGGATAACAATTCGTGGCGTAGAAAAGCTAAATTCAGACTCTTTGTCGCAAGAGATGTGCTTTTGGTTTTCTTAGCTGTGCAGACTGTTATCGCTGTGATGGCCGGATTCGCATATATGATGGACAAAGACGGAGAGTTTCGCAACTCTTTCAACGATGATTGGGATCGTATTTTGTCGAAACATCCCATCCCGTTTTATTACTGCATTGGGGTTATATCCTTCTTTGTGCTGACTGGATTTCTTGGAATCATTCTACATTGCTCTGCTCTCAACGGTAATGACCCGAGGATGGCTGGATGCCAGAACTGCTGTTATGGATGGGGTGTCTTGGATTGTTTCCCTGCTTCAATGGAAGCTTGTTTCGCTCTTGTTGTTGTTTTTGTCGTCATCTTTGCCATTCTTGGTTTAGCGTATGGGTTTCTTGCTGCAACTATGGCTATCCAAAGGATATGGCAGAGACATTACCATATTCTCACCAAGCGAGAGCTCACAAAGGAGTACATTGTGGAGGATCTTCACGGAAGTTACACTCCCCCGAAGCTGGATGCAGAGCACGAAGGAAGACTGAAAATGCTGAAACTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

321

Amino Acids

35.99

Weight (kDa)

5.55

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 63 - 114 9.8e-11 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AciI CCGC 1 cut(s) 57
AclWI GGATC 2 cut(s) 549, 897
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 2 cut(s) 159, 168
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 3 cut(s) 18, 334, 878
AfiI CCNNNNNNNGG 3 cut(s) 68, 667, 919
AgsI TTSAA 2 cut(s) 529, 726
AhdI GACNNNNNGTC 1 cut(s) 419
AluBI AGCT 6 cut(s) 179, 404, 452, 734, 865, 919
AluI AGCT 6 cut(s) 179, 404, 452, 734, 865, 919
Alw21I GWGCWC 2 cut(s) 867, 933
Alw26I GTCTC 3 cut(s) 102, 290, 829
AlwI GGATC 2 cut(s) 549, 897
Ama87I CYCGRG 1 cut(s) 661
AoxI GGCC 1 cut(s) 477
ApeKI GCWGC 3 cut(s) 25, 107, 803
ApoI RAATTY 1 cut(s) 407
AsuHPI GGTGA 3 cut(s) 23, 231, 844
AvaI CYCGRG 1 cut(s) 661
BanII GRGCYC 1 cut(s) 867
BbsI GAAGAC 1 cut(s) 946
Bbv12I GWGCWC 2 cut(s) 867, 933
BbvI GCAGC 3 cut(s) 37, 94, 790
BccI CCATC 5 cut(s) 469, 490, 572, 661, 690
BcoDI GTCTC 3 cut(s) 102, 290, 829
BisI GCNGC 3 cut(s) 26, 108, 804
BlsI GCNGC 3 cut(s) 27, 109, 805
BmeRI GACNNNNNGTC 1 cut(s) 419
BmeT110I CYCGRG 1 cut(s) 661
BmsI GCATC 4 cut(s) 157, 283, 665, 913
BpiI GAAGAC 1 cut(s) 946
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 662
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 667, 919
Bse1I ACTGG 1 cut(s) 616
Bse3DI GCAATG 1 cut(s) 634
Bse8I GATNNNNATC 1 cut(s) 540
BseDI CCNNGG 1 cut(s) 662
BseGI GGATG 6 cut(s) 559, 564, 672, 680, 701, 928
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 3 cut(s) 68, 667, 919
BseMI GCAATG 1 cut(s) 634
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 616
BseXI GCAGC 3 cut(s) 37, 94, 790
BsgI GTGCAG 1 cut(s) 476
Bsh1285I CGRYCG 1 cut(s) 302
BshFI GGCC 1 cut(s) 479
BsiEI CGRYCG 1 cut(s) 302
BsiHKAI GWGCWC 2 cut(s) 867, 933
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 2 cut(s) 32, 480
BslI CCNNNNNNNGG 3 cut(s) 68, 667, 919
BsmAI GTCTC 3 cut(s) 102, 290, 829
BsmBI CGTCTC 1 cut(s) 102
BsnI GGCC 1 cut(s) 479
BsoBI CYCGRG 1 cut(s) 661
Bsp1286I GDGCHC 2 cut(s) 867, 933
Bsp143I GATC 5 cut(s) 73, 289, 299, 541, 889
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 1 cut(s) 351
BspPI GGATC 2 cut(s) 549, 897
BsrBI CCGCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 634
BsrI ACTGG 1 cut(s) 616
BssECI CCNNGG 1 cut(s) 662
BssMI GATC 5 cut(s) 73, 289, 299, 541, 889
BssNI GRCGYC 1 cut(s) 95
Bst4CI ACNGT 4 cut(s) 332, 351, 463, 653
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 3 cut(s) 47, 359, 448
BstENI CCTNNNNNAGG 1 cut(s) 66
BstF5I GGATG 6 cut(s) 559, 564, 672, 680, 701, 928
BstKTI GATC 5 cut(s) 76, 292, 302, 544, 892
BstMAI GTCTC 3 cut(s) 102, 290, 829
BstMBI GATC 5 cut(s) 73, 289, 299, 541, 889
BstMCI CGRYCG 1 cut(s) 302
BstMWI GCNNNNNNNGC 6 cut(s) 176, 476, 485, 684, 740, 812
BstV1I GCAGC 3 cut(s) 37, 94, 790
BstV2I GAAGAC 1 cut(s) 946
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
BsuRI GGCC 1 cut(s) 479
BtgZI GCGATG 3 cut(s) 147, 240, 260
BtsCI GGATG 6 cut(s) 559, 564, 672, 680, 701, 928
BtsIMutI CAGTG 1 cut(s) 328
CseI GACGC 2 cut(s) 84, 99
Csp6I GTAC 3 cut(s) 17, 333, 877
CviAII CATG 1 cut(s) 282
CviQI GTAC 3 cut(s) 17, 333, 877
DdeI CTNAG 3 cut(s) 47, 359, 448
DpnI GATC 5 cut(s) 75, 291, 301, 543, 891
DpnII GATC 5 cut(s) 73, 289, 299, 541, 889
DriI GACNNNNNGTC 1 cut(s) 419
EaeI YGGCCR 1 cut(s) 477
Eam1105I GACNNNNNGTC 1 cut(s) 419
Ecl136II GAGCTC 1 cut(s) 865
Eco24I GRGCYC 1 cut(s) 867
Eco53kI GAGCTC 1 cut(s) 865
Eco57I CTGAAG 2 cut(s) 159, 168
Eco88I CYCGRG 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 865
EcoNI CCTNNNNNAGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 867
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 1 cut(s) 285
FatI CATG 1 cut(s) 281
Fnu4HI GCNGC 3 cut(s) 26, 108, 804
FokI GGATG 6 cut(s) 546, 551, 679, 687, 708, 935
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 3 cut(s) 26, 108, 804
GluI GCNGC 3 cut(s) 26, 108, 804
HaeIII GGCC 1 cut(s) 479
HapII CCGG 2 cut(s) 32, 480
HgaI GACGC 2 cut(s) 84, 99
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 732
HinfI GANTC 6 cut(s) 35, 53, 363, 414, 483, 624
HpaII CCGG 2 cut(s) 32, 480
HphI GGTGA 3 cut(s) 23, 231, 844
Hpy188I TCNGA 2 cut(s) 360, 413
Hpy188III TCNNGA 1 cut(s) 287
HpyAV CCTTC 4 cut(s) 111, 305, 607, 929
HpyCH4III ACNGT 4 cut(s) 332, 351, 463, 653
HpyCH4V TGCA 8 cut(s) 7, 25, 274, 342, 457, 582, 806, 926
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 476, 485, 684, 740, 812
HpyF3I CTNAG 3 cut(s) 47, 359, 448
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 285
Kzo9I GATC 5 cut(s) 73, 289, 299, 541, 889
LmnI GCTCC 2 cut(s) 64, 184
LpnPI CCDG 8 cut(s) 45, 108, 493, 597, 657, 692, 732, 905
Lsp1109I GCAGC 3 cut(s) 37, 94, 790
LweI GCATC 4 cut(s) 157, 283, 665, 913
MaeIII GTNAC 1 cut(s) 902
MalI GATC 5 cut(s) 75, 291, 301, 543, 891
MbiI CCGCTC 1 cut(s) 59
MboI GATC 5 cut(s) 73, 289, 299, 541, 889
MboII GAAGA 7 cut(s) 78, 81, 161, 164, 165, 884, 951
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 2 cut(s) 867, 933
MluCI AATT 7 cut(s) 20, 82, 215, 230, 266, 385, 407
MlyI GAGTC 2 cut(s) 372, 408
MnlI CCTC 4 cut(s) 196, 370, 657, 880
MseI TTAA 1 cut(s) 306
MspI CCGG 2 cut(s) 32, 480
MunI CAATTG 1 cut(s) 20
MwoI GCNNNNNNNGC 6 cut(s) 176, 476, 485, 684, 740, 812
NdeII GATC 5 cut(s) 73, 289, 299, 541, 889
NlaIII CATG 1 cut(s) 285
PfeI GAWTC 4 cut(s) 35, 53, 483, 624
PkrI GCNGC 3 cut(s) 27, 109, 805
Ple19I CGATCG 1 cut(s) 302
PleI GAGTC 2 cut(s) 371, 408
PpsI GAGTC 2 cut(s) 371, 408
Psp124BI GAGCTC 1 cut(s) 867
PsuI RGATCY 1 cut(s) 889
PvuI CGATCG 1 cut(s) 302
RsaI GTAC 3 cut(s) 18, 334, 878
RsaNI GTAC 3 cut(s) 17, 333, 877
SacI GAGCTC 1 cut(s) 867
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 3 cut(s) 26, 108, 804
Sau3AI GATC 5 cut(s) 73, 289, 299, 541, 889
SchI GAGTC 2 cut(s) 372, 408
SduI GDGCHC 2 cut(s) 867, 933
SetI ASST 9 cut(s) 13, 181, 244, 316, 406, 454, 736, 867, 921
SfaNI GCATC 4 cut(s) 157, 283, 665, 913
Sse9I AATT 7 cut(s) 20, 82, 215, 230, 266, 385, 407
SsiI CCGC 1 cut(s) 57
SstI GAGCTC 1 cut(s) 867
TaaI ACNGT 4 cut(s) 332, 351, 463, 653
TaqI TCGA 3 cut(s) 288, 366, 554
TasI AATT 7 cut(s) 20, 82, 215, 230, 266, 385, 407
TatI WGTACW 3 cut(s) 16, 332, 876
TfiI GAWTC 4 cut(s) 35, 53, 483, 624
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 335
TseI GCWGC 3 cut(s) 25, 107, 803
TspDTI ATGAA 2 cut(s) 243, 344
TspGWI ACGGA 2 cut(s) 522, 912
TspRI CASTG 1 cut(s) 335
XagI CCTNNNNNAGG 1 cut(s) 66
XapI RAATTY 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.