Rorug02G0000800

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
112604 .. 117412
4809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0000800.1

Sequence Viewer

Length: 1335 bp
ATGGATGAAGAGTATGACGTCATAGTGTTGGGAACTGGTCTGAAGGAATGCATCCTCAGCGGTCTTCTCTCGGTTGACGGCCTCAAGGTTCTACACATGGATAGGAATGACTATTACGGAGGAGAGTGTGCATCACTTAATCTTATTCAGCTCTGGAAGAGGTTCAGGGGAGATGATAAGCCCCCAGCACAGTTGGGCTCTAGTAGGGATTATAATGTGGACATGGTCCCTAAGTTTATGATGGCCAATGGAACTCTAGTGCGTGTCCTCATTCATACAGATGTTACCAAGTATTTGTCCTTCAAAGCTGTGGATGGCAGTTTTGTCTATAATAAAGGAAAGGTTCACAAGGTTCCAGCAAATGATATGGAGGCACTTAAATCTCCACTCATGGGTCTATTCGAAAAGCGCCGTGCCCGCAAGTTCTTCATATATGTTCAAGATTATAATGAAAGCGATCCCAAAACACATGAGGGAATGGACTTAACAAGAGTGACAACTAGAGAATTGATTGCAAAATATGGTCTTGATGACAACACTATTGACTTCATTGGGCATGCTTTAGCACTTCATAGAGATGATCGCTACCTGGATGAACCTGCACTGGATACTGTGAAAAGGATGAAGCTTTATGCGGAATCTATTGCACGTTTTCAAGGAGGATCTCCATACATTTATCCTTTGTATGGACTAGGAGAGCTTCCACAGGCATTTGCACGACTTAGTGCGGTTTATGGTGGTACTTATATGCTTAATAAACCTGAATGCAAGGTGGAGTTCAATGAGGAAGGGAAAGTTATTGGTGTCACATCTGAAGGTGAAACTGCCAAGTGCACAAAAGTTGTCTGTGACCCTTCTTACTTACCCAACAAGGTCAGAAAGGTTGGTAAGGTTGCAAGGGCTATAGCCATTATGAGCCACCCGATTCCAAACACAAATGATTCTCATTCAGTGCAGGTTATCCTGCCACAAAAGCAGCTGGGTCGCAGATCAGATATGTATCTCTTCTGTTCCTCTTACTCTCACAATGTTGCTCCGAAGGGAAAGTTTGTTGCGTTTGTGTCAACGGAGGCGGAAACTGATAATCCACATACTGAGCTAAAGCCAGGAATTGACCTTTTAGGGCCTGTTGAAGAGATATTTTTTGATATTTATGACAGATATGAGCCGGTCAATGAACCCTCTTTGGACAATTGCTTTATATCAACTAGTTATGATGCCACAACACACTTTGAGTCCACTGTCATGGATGTACTCAACATGTATACCTTGATAACAGGGAAGGTTCTTGATCTTAGCGTGGACCTAAGTGCTGCTAGTGCTGCCGAAGAATGA

Protein Analysis

444

Amino Acids

49.74

Weight (kDa)

5.49

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 1 - 433 7.1e-234 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 213, 447
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 2 cut(s) 607, 946
AccI GTMKAC 1 cut(s) 1265
AciI CCGC 5 cut(s) 60, 418, 635, 728, 1073
AclWI GGATC 2 cut(s) 452, 670
AcoI YGGCCR 1 cut(s) 243
AcuI CTGAAG 2 cut(s) 62, 834
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 2 cut(s) 742, 1254
AfiI CCNNNNNNNGG 2 cut(s) 392, 686
AflIII ACRYGT 1 cut(s) 1260
AgsI TTSAA 5 cut(s) 304, 440, 656, 781, 1133
AhlI ACTAGT 1 cut(s) 1208
AjnI CCWGG 2 cut(s) 588, 1105
AluBI AGCT 6 cut(s) 151, 308, 628, 700, 979, 1099
AluI AGCT 6 cut(s) 151, 308, 628, 700, 979, 1099
Alw21I GWGCWC 1 cut(s) 836
Alw44I GTGCAC 1 cut(s) 832
AlwI GGATC 2 cut(s) 452, 670
AoxI GGCC 3 cut(s) 79, 243, 1124
ApaLI GTGCAC 1 cut(s) 832
ApeKI GCWGC 3 cut(s) 976, 1313, 1322
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 3 cut(s) 226, 1124, 1303
AsuHPI GGTGA 1 cut(s) 830
AsuII TTCGAA 1 cut(s) 402
AvaII GGWCC 2 cut(s) 226, 1303
BaeGI GKGCMC 2 cut(s) 418, 836
BalI TGGCCA 1 cut(s) 245
BanII GRGCYC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 284, 316
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 836
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 3 cut(s) 988, 1300, 1309
BccI CCATC 2 cut(s) 235, 308
BceAI ACGGC 2 cut(s) 94, 396
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 2 cut(s) 590, 1107
BciVI GTATCC 1 cut(s) 601
BcuI ACTAGT 1 cut(s) 1208
BfaI CTAG 6 cut(s) 201, 257, 501, 692, 1209, 1317
BfmI CTRYAG 1 cut(s) 903
BfoI RGCGCY 1 cut(s) 412
BfuAI ACCTGC 2 cut(s) 607, 946
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 3 cut(s) 977, 1314, 1323
BlsI GCNGC 3 cut(s) 978, 1315, 1324
Bme1390I CCNGG 2 cut(s) 590, 1107
Bme18I GGWCC 2 cut(s) 226, 1303
BmgT120I GGNCC 3 cut(s) 226, 1124, 1303
BmiI GGNNCC 2 cut(s) 228, 354
BmrFI CCNGG 2 cut(s) 590, 1107
BmsI GCATC 3 cut(s) 60, 140, 1207
BpiI GAAGAC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 686
Bse118I RCCGGY 1 cut(s) 1168
Bse1I ACTGG 2 cut(s) 40, 609
Bse8I GATNNNNATC 1 cut(s) 999
BseBI CCWGG 2 cut(s) 590, 1107
BseGI GGATG 6 cut(s) 10, 51, 319, 598, 627, 1255
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 2 cut(s) 392, 686
BseMII CTCAG 2 cut(s) 70, 1086
BseNI ACTGG 2 cut(s) 40, 609
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 2 cut(s) 418, 836
BseXI GCAGC 3 cut(s) 988, 1300, 1309
BseYI CCCAGC 2 cut(s) 184, 979
BsgI GTGCAG 2 cut(s) 585, 974
BshFI GGCC 3 cut(s) 81, 245, 1126
BsiHKAI GWGCWC 1 cut(s) 836
BsiSI CCGG 1 cut(s) 1169
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 392, 686
BsmFI GGGAC 1 cut(s) 212
BsmI GAATGC 2 cut(s) 53, 770
BsnI GGCC 3 cut(s) 81, 245, 1126
Bsp119I TTCGAA 1 cut(s) 402
Bsp1286I GDGCHC 3 cut(s) 200, 418, 836
Bsp143I GATC 5 cut(s) 457, 580, 662, 989, 1291
BspACI CCGC 5 cut(s) 60, 418, 635, 728, 1073
BspANI GGCC 3 cut(s) 81, 245, 1126
BspCNI CTCAG 2 cut(s) 69, 1087
BspLI GGNNCC 2 cut(s) 228, 354
BspMI ACCTGC 2 cut(s) 607, 946
BspPI GGATC 2 cut(s) 452, 670
BspT104I TTCGAA 1 cut(s) 402
BsrFI RCCGGY 1 cut(s) 1168
BsrI ACTGG 2 cut(s) 40, 609
BssAI RCCGGY 1 cut(s) 1168
BssMI GATC 5 cut(s) 457, 580, 662, 989, 1291
BssNAI GTATAC 1 cut(s) 1266
BssNI GRCGYC 1 cut(s) 18
Bst1107I GTATAC 1 cut(s) 1266
Bst2UI CCWGG 2 cut(s) 590, 1107
Bst4CI ACNGT 3 cut(s) 192, 613, 1243
Bst6I CTCTTC 4 cut(s) 3, 152, 1010, 1128
BstACI GRCGYC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 418, 558
BstDEI CTNAG 6 cut(s) 56, 231, 722, 1095, 1295, 1307
BstF5I GGATG 6 cut(s) 10, 51, 319, 598, 627, 1255
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 5 cut(s) 460, 583, 665, 992, 1294
BstMBI GATC 5 cut(s) 457, 580, 662, 989, 1291
BstMWI GCNNNNNNNGC 5 cut(s) 57, 417, 973, 1319, 1322
BstNI CCWGG 2 cut(s) 590, 1107
BstNSI RCATGY 2 cut(s) 560, 1264
BstSCI CCNGG 2 cut(s) 588, 1105
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 2 cut(s) 418, 836
BstV1I GCAGC 3 cut(s) 988, 1300, 1309
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 662
BstXI CCANNNNNNTGG 1 cut(s) 1246
BstYI RGATCY 1 cut(s) 662
BstZ17I GTATAC 1 cut(s) 1266
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 3 cut(s) 81, 245, 1126
BtsCI GGATG 6 cut(s) 10, 51, 319, 598, 627, 1255
BtsIMutI CAGTG 3 cut(s) 602, 957, 1239
BveI ACCTGC 2 cut(s) 607, 946
Cac8I GCNNGC 2 cut(s) 418, 558
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 1168
Cfr13I GGNCC 3 cut(s) 226, 1124, 1303
Csp6I GTAC 2 cut(s) 741, 1253
CviAII CATG 7 cut(s) 97, 223, 391, 470, 557, 1246, 1261
CviQI GTAC 2 cut(s) 741, 1253
DdeI CTNAG 6 cut(s) 56, 231, 722, 1095, 1295, 1307
DpnI GATC 5 cut(s) 459, 582, 664, 991, 1293
DpnII GATC 5 cut(s) 457, 580, 662, 989, 1291
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 4 cut(s) 3, 152, 1010, 1128
EarI CTCTTC 4 cut(s) 3, 152, 1010, 1128
EciI GGCGGA 1 cut(s) 1088
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 226, 1303
Eco57I CTGAAG 2 cut(s) 62, 834
EcoO109I RGGNCCY 1 cut(s) 1124
EcoRII CCWGG 2 cut(s) 588, 1105
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 7 cut(s) 100, 226, 394, 473, 560, 1249, 1264
FaqI GGGAC 1 cut(s) 212
FatI CATG 7 cut(s) 96, 222, 390, 469, 556, 1245, 1260
FauI CCCGC 1 cut(s) 425
FblI GTMKAC 1 cut(s) 1265
Fnu4HI GCNGC 3 cut(s) 977, 1314, 1323
FokI GGATG 6 cut(s) 17, 38, 326, 605, 634, 1262
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 3 cut(s) 977, 1314, 1323
FspBI CTAG 6 cut(s) 201, 257, 501, 692, 1209, 1317
GlaI GCGC 1 cut(s) 410
GluI GCNGC 3 cut(s) 977, 1314, 1323
GsaI CCCAGC 2 cut(s) 188, 983
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 3 cut(s) 81, 245, 1126
HapII CCGG 1 cut(s) 1169
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 7 cut(s) 100, 226, 394, 473, 560, 1249, 1264
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 2 cut(s) 76, 1065
HindII GTYRAC 2 cut(s) 76, 1065
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 4 cut(s) 638, 925, 941, 1235
HpaII CCGG 1 cut(s) 1169
HphI GGTGA 1 cut(s) 830
Hpy166II GTNNAC 8 cut(s) 76, 220, 346, 834, 1065, 1239, 1266, 1303
Hpy188I TCNGA 5 cut(s) 42, 814, 878, 994, 1038
Hpy188III TCNNGA 4 cut(s) 154, 440, 527, 1289
Hpy8I GTNNAC 8 cut(s) 76, 220, 346, 834, 1065, 1239, 1266, 1303
HpyAV CCTTC 7 cut(s) 37, 310, 782, 809, 864, 1033, 1276
HpyCH4III ACNGT 3 cut(s) 192, 613, 1243
HpyCH4IV ACGT 2 cut(s) 18, 649
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 417, 973, 1319, 1322
HpyF3I CTNAG 6 cut(s) 56, 231, 722, 1095, 1295, 1307
HpySE526I ACGT 2 cut(s) 18, 649
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 7 cut(s) 100, 226, 394, 473, 560, 1249, 1264
HspAI GCGC 1 cut(s) 409
Kzo9I GATC 5 cut(s) 457, 580, 662, 989, 1291
LmnI GCTCC 1 cut(s) 1039
Lsp1109I GCAGC 3 cut(s) 988, 1300, 1309
LweI GCATC 3 cut(s) 60, 140, 1207
MaeI CTAG 6 cut(s) 201, 257, 501, 692, 1209, 1317
MaeII ACGT 2 cut(s) 18, 649
MaeIII GTNAC 4 cut(s) 283, 493, 805, 848
MalI GATC 5 cut(s) 459, 582, 664, 991, 1293
MboI GATC 5 cut(s) 457, 580, 662, 989, 1291
MboII GAAGA 6 cut(s) 20, 56, 169, 418, 997, 1145
MfeI CAATTG 1 cut(s) 1192
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 3 cut(s) 200, 418, 836
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 3 cut(s) 506, 1110, 1192
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 1 cut(s) 1244
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 245
MseI TTAA 4 cut(s) 138, 378, 485, 753
MslI CAYNNNNRTG 3 cut(s) 279, 576, 1244
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 2 cut(s) 60, 979
MspI CCGG 1 cut(s) 1169
MspR9I CCNGG 2 cut(s) 590, 1107
MunI CAATTG 1 cut(s) 1192
Mva1269I GAATGC 2 cut(s) 53, 770
MvaI CCWGG 2 cut(s) 590, 1107
MwoI GCNNNNNNNGC 5 cut(s) 57, 417, 973, 1319, 1322
NdeII GATC 5 cut(s) 457, 580, 662, 989, 1291
NlaIII CATG 7 cut(s) 100, 226, 394, 473, 560, 1249, 1264
NlaIV GGNNCC 2 cut(s) 228, 354
NmuCI GTSAC 3 cut(s) 493, 805, 848
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 2 cut(s) 560, 1264
NspV TTCGAA 1 cut(s) 402
PaeI GCATGC 1 cut(s) 560
PciI ACATGT 1 cut(s) 1260
PctI GAATGC 2 cut(s) 53, 770
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 3 cut(s) 638, 925, 941
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 978, 1315, 1324
PleI GAGTC 1 cut(s) 1243
PpsI GAGTC 1 cut(s) 1243
PscI ACATGT 1 cut(s) 1260
PsiI TTATAA 2 cut(s) 213, 447
Psp6I CCWGG 2 cut(s) 588, 1105
PspFI CCCAGC 2 cut(s) 184, 979
PspGI CCWGG 2 cut(s) 588, 1105
PspN4I GGNNCC 2 cut(s) 228, 354
PspPI GGNCC 3 cut(s) 226, 1124, 1303
PsuI RGATCY 1 cut(s) 662
PsyI GACNNNGTC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 979
RsaI GTAC 2 cut(s) 742, 1254
RsaNI GTAC 2 cut(s) 741, 1253
RseI CAYNNNNRTG 3 cut(s) 279, 576, 1244
SaqAI TTAA 4 cut(s) 138, 378, 485, 753
SatI GCNGC 3 cut(s) 977, 1314, 1323
Sau3AI GATC 5 cut(s) 457, 580, 662, 989, 1291
Sau96I GGNCC 3 cut(s) 226, 1124, 1303
SchI GAGTC 1 cut(s) 1244
ScrFI CCNGG 2 cut(s) 590, 1107
SduI GDGCHC 3 cut(s) 200, 418, 836
SfaNI GCATC 3 cut(s) 60, 140, 1207
SfcI CTRYAG 1 cut(s) 903
SfuI TTCGAA 1 cut(s) 402
SinI GGWCC 2 cut(s) 226, 1303
SmiMI CAYNNNNRTG 3 cut(s) 279, 576, 1244
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SpeI ACTAGT 1 cut(s) 1208
SphI GCATGC 1 cut(s) 560
Sse9I AATT 3 cut(s) 506, 1110, 1192
SsiI CCGC 5 cut(s) 60, 418, 635, 728, 1073
SspMI CTAG 6 cut(s) 201, 257, 501, 692, 1209, 1317
StyD4I CCNGG 2 cut(s) 588, 1105
TaaI ACNGT 3 cut(s) 192, 613, 1243
TaiI ACGT 2 cut(s) 21, 652
TaqI TCGA 1 cut(s) 402
TasI AATT 3 cut(s) 506, 1110, 1192
TatI WGTACW 1 cut(s) 1252
TfiI GAWTC 3 cut(s) 638, 925, 941
Tru1I TTAA 4 cut(s) 138, 378, 485, 753
Tru9I TTAA 4 cut(s) 138, 378, 485, 753
TscAI CASTG 3 cut(s) 609, 957, 1246
TseFI GTSAC 3 cut(s) 493, 805, 848
TseI GCWGC 3 cut(s) 976, 1313, 1322
Tsp45I GTSAC 3 cut(s) 493, 805, 848
TspDTI ATGAA 9 cut(s) 21, 263, 418, 465, 538, 560, 609, 638, 1191
TspGWI ACGGA 2 cut(s) 132, 1082
TspRI CASTG 3 cut(s) 609, 957, 1246
Tth111I GACNNNGTC 1 cut(s) 224
VneI GTGCAC 1 cut(s) 832
VpaK11BI GGWCC 2 cut(s) 226, 1303
XceI RCATGY 2 cut(s) 560, 1264
XmiI GTMKAC 1 cut(s) 1265
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 6 cut(s) 201, 257, 501, 692, 1209, 1317
ZraI GACGTC 1 cut(s) 19
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.