Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Forward (+)

14920269 .. 14920875

Gene Structure 607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCTTCGTTCTCCAACCCGCAGTCCAAATCGAGCTGGACTACCTCCCTAGATGTGATCAGCGCCATCTCACCACACCGCCATCACCTCTGCACTCAACAAGAAACGGAGATCAAAAACCCAAAACCCAAATCTTTATCCTCCGATGAAGTCTCCGAACACCAACCAGACGACGAGTCGTCGTCTCCGGCGAGCTCCGGTGAGATTAGGAATGAAGACCTTGAGAATGGATCCTCCATTGCTTGTTGTCGCATTTGCCTTGAAAGCGATGCTGAACCGGGGGATGAGTTGATTTCACCATGCTTGTGCAAAGGCACACAACAGTTTGTGCATAGCTCTGTCTTGATCACCGGCGCTCTATTAAGGAAGGATTTGCTTTCTCGCACCGCACAACTTGCAAAGCCCAATTTCATCTTCAAGTTGAATCATATGAGGACAACTCTTGGCGTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

151

Amino Acids

16.53

Weight (kDa)

5.83

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	83 - 114	9.3e-08	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 79, 387
AclWI	GGATC	2 cut(s)	225, 238
AgsI	TTSAA	3 cut(s)	263, 418, 424
AhdI	GACNNNNNGTC	2 cut(s)	175, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	3 cut(s)	36, 195, 336
AluI	AGCT	3 cut(s)	36, 195, 336
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	2 cut(s)	157, 189
AlwI	GGATC	2 cut(s)	225, 238
AspLEI	GCGC	2 cut(s)	65, 356
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	5 cut(s)	63, 77, 212, 288, 340
BamHI	GGATCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	197
BccI	CCATC	2 cut(s)	74, 90
BclI	TGATCA	2 cut(s)	57, 345
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	157, 189
BfaI	CTAG	1 cut(s)	50
BfoI	RGCGCY	2 cut(s)	66, 357
Bme1390I	CCNGG	1 cut(s)	279
BmeRI	GACNNNNNGTC	2 cut(s)	175, 178
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	424, 456
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	197
Bse118I	RCCGGY	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	237
BsgI	GTGCAG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	197
BsiSI	CCGG	4 cut(s)	188, 198, 278, 351
BsmAI	GTCTC	2 cut(s)	157, 189
BsmBI	CGTCTC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	4 cut(s)	57, 111, 230, 345
BspACI	CCGC	3 cut(s)	20, 79, 387
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	225, 238
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	4 cut(s)	57, 111, 230, 345
Bst4CI	ACNGT	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	289
BstH2I	RGCGCY	2 cut(s)	66, 357
BstHHI	GCGC	2 cut(s)	65, 356
BstKTI	GATC	4 cut(s)	60, 114, 233, 348
BstMAI	GTCTC	2 cut(s)	157, 189
BstMBI	GATC	4 cut(s)	57, 111, 230, 345
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 395
BstSCI	CCNGG	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	2 cut(s)	65, 356
Cfr10I	RCCGGY	1 cut(s)	350
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	4 cut(s)	36, 195, 336, 403
CviKI_1	RGCY	4 cut(s)	36, 195, 336, 403
DpnI	GATC	4 cut(s)	59, 113, 232, 347
DpnII	GATC	4 cut(s)	57, 111, 230, 345
DriI	GACNNNNNGTC	2 cut(s)	175, 178
Eam1105I	GACNNNNNGTC	2 cut(s)	175, 178
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	197
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	1 cut(s)	303
FaiI	YATR	4 cut(s)	301, 333, 429, 431
FatI	CATG	1 cut(s)	299
FauI	CCCGC	1 cut(s)	27
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	2 cut(s)	57, 345
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	197
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	2 cut(s)	64, 355
HaeII	RGCGCY	2 cut(s)	66, 357
HapII	CCGG	4 cut(s)	188, 198, 278, 351
HhaI	GCGC	2 cut(s)	65, 356
Hin1II	CATG	1 cut(s)	303
Hin6I	GCGC	2 cut(s)	63, 354
HinP1I	GCGC	2 cut(s)	63, 354
HinfI	GANTC	2 cut(s)	176, 424
HpaII	CCGG	4 cut(s)	188, 198, 278, 351
HphI	GGTGA	5 cut(s)	63, 77, 212, 288, 340
Hpy188I	TCNGA	2 cut(s)	145, 157
Hpy188III	TCNNGA	1 cut(s)	343
Hpy99I	CGWCG	2 cut(s)	176, 184
HpyAV	CCTTC	2 cut(s)	15, 361
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4V	TGCA	4 cut(s)	93, 309, 331, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 395
Hsp92II	CATG	1 cut(s)	303
HspAI	GCGC	2 cut(s)	63, 354
Ksp22I	TGATCA	2 cut(s)	57, 345
Kzo9I	GATC	4 cut(s)	57, 111, 230, 345
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	6 cut(s)	22, 180, 201, 211, 291, 364
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	50
MalI	GATC	4 cut(s)	59, 113, 232, 347
MboI	GATC	4 cut(s)	57, 111, 230, 345
MboII	GAAGA	2 cut(s)	227, 406
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	5 cut(s)	55, 98, 151, 244, 426
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	304
MspI	CCGG	4 cut(s)	188, 198, 278, 351
MspR9I	CCNGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	264, 395
NciI	CCSGG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	4 cut(s)	57, 111, 230, 345
NlaIII	CATG	1 cut(s)	303
NlaIV	GGNNCC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	304
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	362
Sau3AI	GATC	4 cut(s)	57, 111, 230, 345
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	6 cut(s)	38, 47, 90, 197, 222, 338
SfaNI	GCATC	1 cut(s)	259
SgrAI	CRCCGGYG	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	3 cut(s)	20, 79, 387
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	406
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	162, 228, 400
TspGWI	ACGGA	1 cut(s)	122
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.