Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000197.1

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Forward (+)

36230 .. 37992

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000197.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgaagggggaagtgcagctagaaccagttgttgcggaacgggaacccaaccctagtagtgacttggaccctctgctacagaacaccaaccaggacgacgacgacgacgagtcgtcgtctccggcgagctccagtgagattaggaatgaagaccttgagaatggctcctctattgcttgttgtcgcatttgccttgaaagcgatgctgaaccaggggatgagttgatttcaccatgcttgtgcaaaggcacacagcagtttgtcaggaaaagacatagtgttacgtcgagtaaggtgcgtcccaatcggactccagaagccgatttcacgtctactagtcacttttcattttccacctttagcactatccaattgttcttcaaattggactgccatctgttctgcatcatcttcagaccagtcaaaaaggccgaagactcgagccatgactattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

151

Amino Acids

16.88

Weight (kDa)

4.63

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	332
AciI	CCGC	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	397
AgsI	TTSAA	2 cut(s)	197, 382
AhdI	GACNNNNNGTC	2 cut(s)	109, 112
AhlI	ACTAGT	1 cut(s)	335
AjiI	CACGTC	1 cut(s)	330
AjnI	CCWGG	2 cut(s)	90, 211
AluBI	AGCT	2 cut(s)	19, 129
AluI	AGCT	2 cut(s)	19, 129
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	123
Ama87I	CYCGRG	1 cut(s)	439
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	222
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	2 cut(s)	156, 441
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	402
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	2 cut(s)	92, 213
BcoDI	GTCTC	1 cut(s)	123
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	3 cut(s)	20, 54, 336
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	92, 213
Bme18I	GGWCC	1 cut(s)	67
BmeRI	GACNNNNNGTC	2 cut(s)	109, 112
BmeT110I	CYCGRG	1 cut(s)	439
BmgBI	CACGTC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	45, 69, 166
BmrFI	CCNGG	2 cut(s)	92, 213
BmsI	GCATC	2 cut(s)	193, 414
BpiI	GAAGAC	2 cut(s)	156, 441
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	2 cut(s)	115, 297
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	212
Bse1I	ACTGG	3 cut(s)	26, 132, 419
BseBI	CCWGG	2 cut(s)	92, 213
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	223
BseNI	ACTGG	3 cut(s)	26, 132, 419
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	431
BspLI	GGNNCC	3 cut(s)	45, 69, 166
BsrI	ACTGG	3 cut(s)	26, 132, 419
BssECI	CCNNGG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	92, 213
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	2 cut(s)	92, 213
BstSCI	CCNGG	2 cut(s)	90, 211
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	2 cut(s)	156, 441
BsuRI	GGCC	1 cut(s)	431
BtgZI	GCGATG	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	287
CviAII	CATG	2 cut(s)	234, 446
CviJI	RGCY	6 cut(s)	19, 129, 165, 320, 431, 444
CviKI_1	RGCY	6 cut(s)	19, 129, 165, 320, 431, 444
DriI	GACNNNNNGTC	2 cut(s)	109, 112
Eam1105I	GACNNNNNGTC	2 cut(s)	109, 112
Ecl136II	GAGCTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	439
EcoICRI	GAGCTC	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	90, 211
EcoT38I	GRGCYC	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	2 cut(s)	237, 449
FaiI	YATR	3 cut(s)	235, 276, 447
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	2 cut(s)	233, 445
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	3 cut(s)	20, 54, 336
GluI	GCNGC	1 cut(s)	17
GsuI	CTGGAG	2 cut(s)	115, 297
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	237, 449
HinfI	GANTC	3 cut(s)	110, 310, 437
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	222
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	309, 416
Hpy188III	TCNNGA	2 cut(s)	265, 314
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	6 cut(s)	101, 104, 107, 110, 118, 289
HpyCH4IV	ACGT	2 cut(s)	284, 329
HpyCH4V	TGCA	3 cut(s)	16, 243, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	284, 329
Hsp92II	CATG	2 cut(s)	237, 449
LmnI	GCTCC	2 cut(s)	134, 170
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	193, 414
MaeI	CTAG	3 cut(s)	20, 54, 336
MaeII	ACGT	2 cut(s)	284, 329
MaeIII	GTNAC	3 cut(s)	59, 280, 338
MboII	GAAGA	4 cut(s)	161, 370, 403, 446
MfeI	CAATTG	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	2 cut(s)	371, 383
MlyI	GAGTC	3 cut(s)	119, 304, 431
MnlI	CCTC	2 cut(s)	81, 178
MslI	CAYNNNNRTG	1 cut(s)	238
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	92, 213
MunI	CAATTG	1 cut(s)	371
MvaI	CCWGG	2 cut(s)	92, 213
MwoI	GCNNNNNNNGC	1 cut(s)	198
NlaIII	CATG	2 cut(s)	237, 449
NlaIV	GGNNCC	3 cut(s)	45, 69, 166
NmuCI	GTSAC	2 cut(s)	59, 338
PaeR7I	CTCGAG	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 105, 122
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	3 cut(s)	118, 304, 431
PpsI	GAGTC	3 cut(s)	118, 304, 431
Psp124BI	GAGCTC	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	90, 211
PspGI	CCWGG	2 cut(s)	90, 211
PspN4I	GGNNCC	3 cut(s)	45, 69, 166
PspPI	GGNCC	1 cut(s)	67
PspXI	VCTCGAGB	1 cut(s)	439
RseI	CAYNNNNRTG	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	131
SatI	GCNGC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	3 cut(s)	119, 304, 431
ScrFI	CCNGG	2 cut(s)	92, 213
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	7 cut(s)	21, 131, 156, 287, 297, 332, 359
SfaNI	GCATC	2 cut(s)	193, 414
SfcI	CTRYAG	1 cut(s)	77
Sfr274I	CTCGAG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	155, 439
SmoI	CTYRAG	2 cut(s)	155, 439
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	2 cut(s)	371, 383
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	3 cut(s)	20, 54, 336
SstI	GAGCTC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	90, 211
TaiI	ACGT	2 cut(s)	287, 332
TaqI	TCGA	2 cut(s)	287, 440
TasI	AATT	2 cut(s)	371, 383
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	59, 338
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	2 cut(s)	59, 338
TspDTI	ATGAA	3 cut(s)	17, 162, 336
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	67
XhoI	CTCGAG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	3 cut(s)	20, 54, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.