Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Reverse (-)

2109107 .. 2112186

Gene Structure 3080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAATCGGGAAGTGCAGCTGGAACCAGTAGTAGTAGGGGAACGGGAACCGAATGATCCTAGTGACTTGGACCCTCTGCTACAGAGCAGCCACGACGACGACGACGAGTCGTCGGCTCCGGCGAGCTCCAGTGAGATTAGAAATGAAGACATTGAGAATGGCTCCTCTGTTGCTTGTTGTCGCATTTGCCTCGAAAGCGATTCCGATGCAGGTGATGAGTTGATATCGCCGTGCTTGTGCAAAGGCACCCAGCAGTTTGTGCACATATCCTGTCTTGATCACTGGCGCTCGGTTAAGGAAGGATTTGCTTTCTCGCACTGCACCACTTGCAAAGCCCAATTTCATCTTCGAGTTGAATCGTATGAGGACAACACTTGGCGTAAAATGAAATTCAGAATTTTTGTGGCAAGGGATGTTATACTTGTATTTGTGGCTGTACAAACAGTAATTGCCGCAATTGGTGGCTTTGCATATCTGATGGACAAAGATGGTGGCTTCAGGAATTCGTTCAGTGATGGTTGGGATCGTATCTTGTCAAAGCACCCTATACCATTTTACTATTGCATAGCAATGACCCACGGATGGCTGGCTGCCAGAACTGTTGTTATGGATGGGGAATATTGGATTGTTTCCCTGCGTCTATGGAGGCATGCTTTGCCCTGGTTATTGTTTTTGTTGTCATCTTTGCTATTCTTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

234

Amino Acids

26.43

Weight (kDa)

5.02

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	60 - 110	1.9e-10	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	245
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	2 cut(s)	50, 531
AcsI	RAATTY	3 cut(s)	389, 396, 502
AcuI	CTGAAG	1 cut(s)	481
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	582
AgsI	TTSAA	1 cut(s)	356
AhdI	GACNNNNNGTC	2 cut(s)	106, 109
AjnI	CCWGG	1 cut(s)	659
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	2 cut(s)	19, 126
AluI	AGCT	2 cut(s)	19, 126
Alw21I	GWGCWC	2 cut(s)	128, 264
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	50, 531
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	3 cut(s)	16, 87, 590
ApoI	RAATTY	3 cut(s)	389, 396, 502
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	128, 264
BbvI	GCAGC	3 cut(s)	28, 99, 577
BccI	CCATC	5 cut(s)	472, 482, 509, 576, 605
BceAI	ACGGC	1 cut(s)	214
BcgI	CGANNNNNNTGC	4 cut(s)	172, 188, 206, 222
BciT130I	CCWGG	1 cut(s)	661
BclI	TGATCA	1 cut(s)	277
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	289
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	4 cut(s)	17, 88, 453, 591
BlsI	GCNGC	4 cut(s)	18, 89, 454, 592
Bme1390I	CCNGG	1 cut(s)	661
Bme18I	GGWCC	1 cut(s)	70
BmeRI	GACNNNNNGTC	2 cut(s)	106, 109
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	6 cut(s)	24, 48, 72, 117, 163, 247
BmrFI	CCNGG	1 cut(s)	661
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	577, 659
Bsc4I	CCNNNNNNNGG	1 cut(s)	582
Bse1I	ACTGG	3 cut(s)	26, 129, 287
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	2 cut(s)	577, 659
BseGI	GGATG	3 cut(s)	418, 587, 616
BseLI	CCNNNNNNNGG	1 cut(s)	582
BseMI	GCAATG	1 cut(s)	576
BseNI	ACTGG	3 cut(s)	26, 129, 287
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	28, 99, 577
BseYI	CCCAGC	1 cut(s)	249
BsgI	GTGCAG	2 cut(s)	35, 304
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	2 cut(s)	128, 264
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	582
Bsp1286I	GDGCHC	2 cut(s)	128, 264
Bsp1407I	TGTACA	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	55, 277, 523
BspACI	CCGC	1 cut(s)	453
BspLI	GGNNCC	6 cut(s)	24, 48, 72, 117, 163, 247
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	50, 531
BspT107I	GGYRCC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	576
BsrGI	TGTACA	1 cut(s)	436
BsrI	ACTGG	3 cut(s)	26, 129, 287
BssECI	CCNNGG	2 cut(s)	577, 659
BssMI	GATC	3 cut(s)	55, 277, 523
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	2 cut(s)	445, 601
BstAPI	GCANNNNNTGC	3 cut(s)	259, 327, 655
BstAUI	TGTACA	1 cut(s)	436
BstC8I	GCNNGC	3 cut(s)	124, 588, 651
BstDSI	CCRYGG	1 cut(s)	577
BstF5I	GGATG	3 cut(s)	418, 587, 616
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	3 cut(s)	58, 280, 526
BstMBI	GATC	3 cut(s)	55, 277, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 259, 327, 655
BstNI	CCWGG	1 cut(s)	661
BstNSI	RCATGY	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	659
BstSFI	CTRYAG	1 cut(s)	80
BstSLI	GKGCMC	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	28, 99, 577
BstV2I	GAAGAC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	577
BtsCI	GGATG	3 cut(s)	418, 587, 616
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	4 cut(s)	136, 280, 316, 517
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	124, 588, 651
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	1 cut(s)	437
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	1 cut(s)	650
CviQI	GTAC	1 cut(s)	437
DpnI	GATC	3 cut(s)	57, 279, 525
DpnII	GATC	3 cut(s)	55, 277, 523
DriI	GACNNNNNGTC	2 cut(s)	106, 109
Eam1105I	GACNNNNNGTC	2 cut(s)	106, 109
Ecl136II	GAGCTC	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	481
EcoICRI	GAGCTC	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	659
EcoRV	GATATC	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	128
FaeI	CATG	1 cut(s)	653
FatI	CATG	1 cut(s)	649
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	17, 88, 453, 591
FokI	GGATG	3 cut(s)	425, 594, 623
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	4 cut(s)	17, 88, 453, 591
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	4 cut(s)	17, 88, 453, 591
GsaI	CCCAGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	289
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	653
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	4 cut(s)	4, 107, 200, 356
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	205, 395, 477
Hpy188III	TCNNGA	3 cut(s)	8, 275, 499
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	5 cut(s)	98, 101, 104, 107, 115
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	445, 601
HpyCH4V	TGCA	8 cut(s)	16, 209, 240, 262, 321, 330, 470, 564
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 259, 327, 655
Hsp92II	CATG	1 cut(s)	653
HspAI	GCGC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	55, 277, 523
LmnI	GCTCC	3 cut(s)	121, 131, 167
Lsp1109I	GCAGC	3 cut(s)	28, 99, 577
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	3 cut(s)	57, 279, 525
MboI	GATC	3 cut(s)	55, 277, 523
MboII	GAAGA	2 cut(s)	158, 338
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	128, 264
MluCI	AATT	6 cut(s)	338, 389, 396, 447, 456, 502
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	5 cut(s)	84, 175, 200, 358, 639
MroXI	GAANNNNTTC	1 cut(s)	506
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	661
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	4 cut(s)	195, 259, 327, 655
NdeII	GATC	3 cut(s)	55, 277, 523
NlaIII	CATG	1 cut(s)	653
NlaIV	GGNNCC	6 cut(s)	24, 48, 72, 117, 163, 247
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	653
PaeI	GCATGC	1 cut(s)	653
PaqCI	CACCTGC	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 102, 119
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	4, 200, 356
PkrI	GCNGC	4 cut(s)	18, 89, 454, 592
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	6 cut(s)	24, 48, 72, 117, 163, 247
PspPI	GGNCC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	17, 88, 453, 591
Sau3AI	GATC	3 cut(s)	55, 277, 523
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	661
SduI	GDGCHC	2 cut(s)	128, 264
SetI	ASST	3 cut(s)	21, 128, 214
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	569
SphI	GCATGC	1 cut(s)	653
Sse9I	AATT	6 cut(s)	338, 389, 396, 447, 456, 502
SsiI	CCGC	1 cut(s)	453
SspI	AATATT	1 cut(s)	620
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	659
TaaI	ACNGT	2 cut(s)	445, 601
TaqI	TCGA	2 cut(s)	192, 349
TasI	AATT	6 cut(s)	338, 389, 396, 447, 456, 502
TatI	WGTACW	1 cut(s)	436
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	3 cut(s)	4, 200, 356
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	4 cut(s)	136, 287, 323, 517
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	3 cut(s)	16, 87, 590
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	4 cut(s)	17, 159, 332, 401
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	4 cut(s)	136, 287, 323, 517
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	3 cut(s)	389, 396, 502
XceI	RCATGY	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.