Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Reverse (-)

3590148 .. 3593145

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG045900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAGGGGGAAGTGCAGCTAGAACCAGTTGTTGCGGAACGGGAACCGAACCCTAGCAGTGACTTGGACCCTCTGCTACAGAACACCAACCAGGACGACGACGACGACGACGAGTCGTTGTCTCCGGCGAGCTCCAGTGAGATTAGGAATGAAGACCTTGAGAATGGCTCCTCTATTGCTTGTTGTCGCATTTGCCTTGAAAGCGATGCTGAACCAGGGGATGAGTTGATTTCACCATGCTTGTGCAAAGGCACACAGCAGTTTGTGCATAGCTCCTGTCTTGATCACTGGCGCTCTGTTAAGGAAGGATTTGCTTTCTCACACTGCACAACTTGCAAAGCCCAATTTCATCTTCGAGTTGAATCATATGAGGACAACTCTTGGCGTAAAATAAAATTCAGAATTTTTGTGGCAAGGGATGTTTTCCTTGTATTTGTGGCTGTACAAACAATAATTACTGCAATTGGTGGCTTTGCATATCTGATGGACAAAGATGGCGCCTTCAGGAATTCATTCAGTGATGGTTGGGATCGTATCTTGTCAAAACACCCTATACCATTTTATTATTGCATAGGGGTCTTGGCGTTTTTTGTGCTGCTTGGGTTTTTTGGGCTTATACTACACTGTTCAGCCTTCAATAGCAATGACCCACGGATGACTGGCTGCCAGAACTGTTGTTATGGATGGGGAATATTGGATTGTTTCCCTGCGTCTATGGAGGCATGCTTTGCCCTGGTTATTGTTTTTGTTGTCATCTTTGCTATTCTTGGCATAGCTTATGGTTTCCTGGCTGCTACTATGGCTATTCAGAGAATCTGGCAGAGACATTACCACATCCTGACCAAGAGGGAACTCACGAAGGAGTACATAGTGGAGGACCTTCATGGTTGTTACACCCCACCAAAGTTGGATCCTGAACATGAAGAGCGTCTGAAAATGCTCAAGTTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

317

Amino Acids

35.91

Weight (kDa)

5.06

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	62 - 112	7.4e-11	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	537, 905, 918
AcsI	RAATTY	3 cut(s)	395, 402, 508
AcuI	CTGAAG	1 cut(s)	487
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	2 cut(s)	444, 866
AgsI	TTSAA	3 cut(s)	200, 362, 637
AhdI	GACNNNNNGTC	1 cut(s)	112
AjnI	CCWGG	4 cut(s)	90, 214, 732, 786
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	4 cut(s)	19, 132, 273, 776
AluI	AGCT	4 cut(s)	19, 132, 273, 776
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	2 cut(s)	126, 817
AlwI	GGATC	3 cut(s)	537, 905, 918
ApeKI	GCWGC	4 cut(s)	16, 595, 663, 791
ApoI	RAATTY	3 cut(s)	395, 402, 508
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	294, 500
AspS9I	GGNCC	2 cut(s)	67, 877
AsuHPI	GGTGA	1 cut(s)	225
AvaII	GGWCC	2 cut(s)	67, 877
BamHI	GGATCC	1 cut(s)	910
BanI	GGYRCC	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	28, 582, 650, 778
BccI	CCATC	4 cut(s)	478, 488, 515, 678
BciT130I	CCWGG	4 cut(s)	92, 216, 734, 788
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	2 cut(s)	126, 817
BfaI	CTAG	2 cut(s)	20, 54
BfmI	CTRYAG	1 cut(s)	77
BfoI	RGCGCY	2 cut(s)	295, 501
BisI	GCNGC	4 cut(s)	17, 596, 664, 792
BlsI	GCNGC	4 cut(s)	18, 597, 665, 793
Bme1390I	CCNGG	4 cut(s)	92, 216, 734, 788
Bme18I	GGWCC	2 cut(s)	67, 877
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	67, 877
BmiI	GGNNCC	5 cut(s)	45, 69, 169, 499, 912
BmrFI	CCNGG	4 cut(s)	92, 216, 734, 788
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	4 cut(s)	152, 184, 362, 394
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	2 cut(s)	179, 926
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	215, 650, 732
Bse1I	ACTGG	4 cut(s)	26, 135, 293, 664
Bse3DI	GCAATG	1 cut(s)	649
BseBI	CCWGG	4 cut(s)	92, 216, 734, 788
BseDI	CCNNGG	3 cut(s)	215, 650, 732
BseGI	GGATG	5 cut(s)	226, 424, 660, 689, 834
BseMI	GCAATG	1 cut(s)	649
BseNI	ACTGG	4 cut(s)	26, 135, 293, 664
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	4 cut(s)	28, 582, 650, 778
BsgI	GTGCAG	2 cut(s)	35, 310
BshNI	GGYRCC	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	126, 817
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	3 cut(s)	283, 529, 910
BspACI	CCGC	1 cut(s)	35
BspLI	GGNNCC	5 cut(s)	45, 69, 169, 499, 912
BspPI	GGATC	3 cut(s)	537, 905, 918
BspQI	GCTCTTC	1 cut(s)	918
BspT107I	GGYRCC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	649
BsrGI	TGTACA	1 cut(s)	442
BsrI	ACTGG	4 cut(s)	26, 135, 293, 664
BssECI	CCNNGG	3 cut(s)	215, 650, 732
BssMI	GATC	3 cut(s)	283, 529, 910
BssNI	GRCGYC	1 cut(s)	498
Bst2UI	CCWGG	4 cut(s)	92, 216, 734, 788
Bst4CI	ACNGT	2 cut(s)	626, 674
Bst6I	CTCTTC	1 cut(s)	918
BstACI	GRCGYC	1 cut(s)	498
BstAPI	GCANNNNNTGC	3 cut(s)	265, 333, 728
BstAUI	TGTACA	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	130, 724
BstDSI	CCRYGG	1 cut(s)	650
BstF5I	GGATG	5 cut(s)	226, 424, 660, 689, 834
BstH2I	RGCGCY	2 cut(s)	295, 501
BstHHI	GCGC	2 cut(s)	294, 500
BstKTI	GATC	3 cut(s)	286, 532, 913
BstMAI	GTCTC	2 cut(s)	126, 817
BstMBI	GATC	3 cut(s)	283, 529, 910
BstMWI	GCNNNNNNNGC	5 cut(s)	201, 265, 333, 728, 800
BstNI	CCWGG	4 cut(s)	92, 216, 734, 788
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	4 cut(s)	90, 214, 732, 786
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	28, 582, 650, 778
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	910
BtgI	CCRYGG	1 cut(s)	650
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	5 cut(s)	226, 424, 660, 689, 834
BtsI	GCAGTG	2 cut(s)	64, 322
BtsIMutI	CAGTG	6 cut(s)	64, 142, 286, 322, 523, 622
Cac8I	GCNNGC	2 cut(s)	130, 724
CfoI	GCGC	2 cut(s)	294, 500
Cfr13I	GGNCC	2 cut(s)	67, 877
CseI	GACGC	2 cut(s)	699, 917
Csp6I	GTAC	2 cut(s)	443, 865
CspCI	CAANNNNNGTGG	2 cut(s)	888, 923
CviAII	CATG	4 cut(s)	237, 723, 884, 920
CviQI	GTAC	2 cut(s)	443, 865
DinI	GGCGCC	1 cut(s)	499
DpnI	GATC	3 cut(s)	285, 531, 912
DpnII	GATC	3 cut(s)	283, 529, 910
DriI	GACNNNNNGTC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	918
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	918
Ecl136II	GAGCTC	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	67, 877
Eco53kI	GAGCTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	487
EcoICRI	GAGCTC	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	877
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	4 cut(s)	90, 214, 732, 786
EcoT38I	GRGCYC	1 cut(s)	134
EgeI	GGCGCC	1 cut(s)	499
EheI	GGCGCC	1 cut(s)	499
FaeI	CATG	4 cut(s)	240, 726, 887, 923
FatI	CATG	4 cut(s)	236, 722, 883, 919
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	4 cut(s)	17, 596, 664, 792
FokI	GGATG	5 cut(s)	233, 431, 667, 696, 821
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	4 cut(s)	17, 596, 664, 792
FspBI	CTAG	2 cut(s)	20, 54
GlaI	GCGC	2 cut(s)	293, 499
GluI	GCNGC	4 cut(s)	17, 596, 664, 792
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	2 cut(s)	295, 501
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	2 cut(s)	699, 917
HhaI	GCGC	2 cut(s)	294, 500
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	4 cut(s)	240, 726, 887, 923
Hin6I	GCGC	2 cut(s)	292, 498
HinP1I	GCGC	2 cut(s)	292, 498
HinfI	GANTC	3 cut(s)	113, 362, 813
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	225
Hpy188I	TCNGA	4 cut(s)	401, 483, 810, 933
Hpy188III	TCNNGA	5 cut(s)	281, 505, 838, 856, 914
Hpy99I	CGWCG	5 cut(s)	101, 104, 107, 110, 113
HpyAV	CCTTC	5 cut(s)	299, 511, 643, 853, 890
HpyCH4III	ACNGT	2 cut(s)	626, 674
HpyCH4V	TGCA	8 cut(s)	16, 246, 268, 327, 336, 461, 476, 570
HpyF10VI	GCNNNNNNNGC	5 cut(s)	201, 265, 333, 728, 800
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	240, 726, 887, 923
HspAI	GCGC	2 cut(s)	292, 498
KasI	GGCGCC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	283, 529, 910
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	3 cut(s)	137, 173, 278
Lsp1109I	GCAGC	4 cut(s)	28, 582, 650, 778
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	20, 54
MaeIII	GTNAC	2 cut(s)	59, 890
MalI	GATC	3 cut(s)	285, 531, 912
MboI	GATC	3 cut(s)	283, 529, 910
MboII	GAAGA	3 cut(s)	164, 344, 935
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	6 cut(s)	344, 395, 402, 453, 462, 508
Mly113I	GGCGCC	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	888
MnlI	CCTC	6 cut(s)	81, 181, 364, 712, 840, 868
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	241
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	4 cut(s)	92, 216, 734, 788
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	4 cut(s)	92, 216, 734, 788
MwoI	GCNNNNNNNGC	5 cut(s)	201, 265, 333, 728, 800
NarI	GGCGCC	1 cut(s)	498
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	3 cut(s)	283, 529, 910
NlaIII	CATG	4 cut(s)	240, 726, 887, 923
NlaIV	GGNNCC	5 cut(s)	45, 69, 169, 499, 912
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	726
PaeI	GCATGC	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	918
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 105, 108
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	362, 813
PkrI	GCNGC	4 cut(s)	18, 597, 665, 793
PleI	GAGTC	1 cut(s)	121
PluTI	GGCGCC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	121
PpuMI	RGGWCCY	1 cut(s)	877
Psp124BI	GAGCTC	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	877
Psp6I	CCWGG	4 cut(s)	90, 214, 732, 786
PspGI	CCWGG	4 cut(s)	90, 214, 732, 786
PspN4I	GGNNCC	5 cut(s)	45, 69, 169, 499, 912
PspPI	GGNCC	2 cut(s)	67, 877
PspPPI	RGGWCCY	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	910
RsaI	GTAC	2 cut(s)	444, 866
RsaNI	GTAC	2 cut(s)	443, 865
RseI	CAYNNNNRTG	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	134
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	17, 596, 664, 792
Sau3AI	GATC	3 cut(s)	283, 529, 910
Sau96I	GGNCC	2 cut(s)	67, 877
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	4 cut(s)	92, 216, 734, 788
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	6 cut(s)	21, 134, 159, 275, 778, 882
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	77
SfoI	GGCGCC	1 cut(s)	499
SinI	GGWCC	2 cut(s)	67, 877
SmiMI	CAYNNNNRTG	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	158, 941
SmoI	CTYRAG	2 cut(s)	158, 941
SphI	GCATGC	1 cut(s)	726
Sse9I	AATT	6 cut(s)	344, 395, 402, 453, 462, 508
SsiI	CCGC	1 cut(s)	35
SspDI	GGCGCC	1 cut(s)	497
SspI	AATATT	1 cut(s)	693
SspMI	CTAG	2 cut(s)	20, 54
SstI	GAGCTC	1 cut(s)	134
StyD4I	CCNGG	4 cut(s)	90, 214, 732, 786
TaaI	ACNGT	2 cut(s)	626, 674
TaqI	TCGA	1 cut(s)	355
TasI	AATT	6 cut(s)	344, 395, 402, 453, 462, 508
TatI	WGTACW	2 cut(s)	442, 864
TfiI	GAWTC	2 cut(s)	362, 813
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	6 cut(s)	64, 142, 293, 329, 523, 629
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	4 cut(s)	16, 595, 663, 791
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	6 cut(s)	17, 165, 338, 501, 872, 936
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	6 cut(s)	64, 142, 293, 329, 523, 629
VpaK11BI	GGWCC	2 cut(s)	67, 877
XapI	RAATTY	3 cut(s)	395, 402, 508
XceI	RCATGY	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	2 cut(s)	20, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.