Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Reverse (-)

3696254 .. 3699254

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG046300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAGGGGGAAGTGCAGCTAGAACCAGTTGTTGCGGAACGGGAACCGAACCCTAGTAGTGACTTGGACCCTCTGCTACAGAACACCAACCAGGACGAGTCGTCGTCTCCGGCGAGCTCCAGTGAGATTAGGAATGAAGACCTTGAGAATGGCTCCTCTATTGCTTGTTGTCGCATTTGCCTTGAAAGCGATGCTGAACCAGGGGATGAGTTGATTTCACCATGCTTGTGCAAAGGCACACAGCAGTTTGTGCATAGCTCCTGTCTTGATCACTGGCGCTCTGTTAAGGAAGGATTTGCTTTCTCACACTGCACAACTTGCAAAGCCCAATTTCATCTTCGAGTTGAATCATATGAGGACAGCTCTTGGCGTAAAATAAAATTCAGAATTTTTGTGGCAAGGGATGTTTTCCTTGTATTTGTGGCTGTACAAACAATAATTACTGCAATTGGTGGCTTTGCATATCTGATGGACAAAGATGGCGCCTTCAGGAATTCATTCAGTGATGGTTGGGATCGTATCTTGTCAAAACACCCTATACCATTTTATTATTGCATAGGGGTCGTGGCGTTTTTTGTGCTGCTTGGGTTTTTTGGGCTTATACTACACTGTTCAGCCTTCAATAGCAATGACCCACGGATGGCTGGCTGCCAGAACTGTTGTTATGGATGGGGAATATTGGATTGTTTCCCTGCGTCTATGGAGGCATGCTTTGCCCTGGTTATAGTTTTTGTTGTCATCTTTGCTATTCTTGGCATAGCTTATGGTTTCCTGGCTGCTACTATGGCTATTCAGAGAATCTGGCAGAGACATTACCACATCCTGACCAAGAGGGAACTCACGAAGGAGTACATAGTGGAGGACCTTCATGGTTGTTACACCCCACCAAAGTTGGATCCTGAACATGAAGAGCGTCTGAAAATGCTCAAGTTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

312

Amino Acids

35.24

Weight (kDa)

5.48

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	57 - 107	7.2e-11	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	482
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	522, 890, 903
AcsI	RAATTY	3 cut(s)	380, 387, 493
AcuI	CTGAAG	1 cut(s)	472
AcyI	GRCGYC	1 cut(s)	483
AfaI	GTAC	2 cut(s)	429, 851
AfiI	CCNNNNNNNGG	1 cut(s)	640
AgsI	TTSAA	3 cut(s)	185, 347, 622
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	4 cut(s)	90, 199, 717, 771
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	5 cut(s)	19, 117, 258, 363, 761
AluI	AGCT	5 cut(s)	19, 117, 258, 363, 761
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	111, 802
AlwI	GGATC	3 cut(s)	522, 890, 903
ApeKI	GCWGC	4 cut(s)	16, 580, 648, 776
ApoI	RAATTY	3 cut(s)	380, 387, 493
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	279, 485
AspS9I	GGNCC	2 cut(s)	67, 862
AsuHPI	GGTGA	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	67, 862
BamHI	GGATCC	1 cut(s)	895
BanI	GGYRCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	4 cut(s)	28, 567, 635, 763
BccI	CCATC	5 cut(s)	463, 473, 500, 634, 663
BcgI	CGANNNNNNTGC	2 cut(s)	544, 578
BciT130I	CCWGG	4 cut(s)	92, 201, 719, 773
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	111, 802
BfaI	CTAG	2 cut(s)	20, 54
BfmI	CTRYAG	1 cut(s)	77
BfoI	RGCGCY	2 cut(s)	280, 486
BisI	GCNGC	4 cut(s)	17, 581, 649, 777
BlsI	GCNGC	4 cut(s)	18, 582, 650, 778
Bme1390I	CCNGG	4 cut(s)	92, 201, 719, 773
Bme18I	GGWCC	2 cut(s)	67, 862
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	67, 862
BmiI	GGNNCC	5 cut(s)	45, 69, 154, 484, 897
BmrFI	CCNGG	4 cut(s)	92, 201, 719, 773
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	144
BplI	GAGNNNNNCTC	4 cut(s)	137, 169, 347, 379
BpmI	CTGGAG	1 cut(s)	103
BpuEI	CTTGAG	2 cut(s)	164, 911
BsaHI	GRCGYC	1 cut(s)	483
BsaJI	CCNNGG	3 cut(s)	200, 635, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse1I	ACTGG	3 cut(s)	26, 120, 278
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	4 cut(s)	92, 201, 719, 773
BseDI	CCNNGG	3 cut(s)	200, 635, 717
BseGI	GGATG	5 cut(s)	211, 409, 645, 674, 819
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMI	GCAATG	1 cut(s)	634
BseNI	ACTGG	3 cut(s)	26, 120, 278
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	4 cut(s)	28, 567, 635, 763
BsgI	GTGCAG	2 cut(s)	35, 295
BshNI	GGYRCC	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	2 cut(s)	111, 802
BsmBI	CGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	268, 514, 895
BspACI	CCGC	1 cut(s)	35
BspLI	GGNNCC	5 cut(s)	45, 69, 154, 484, 897
BspPI	GGATC	3 cut(s)	522, 890, 903
BspQI	GCTCTTC	1 cut(s)	903
BspT107I	GGYRCC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	634
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	3 cut(s)	26, 120, 278
BssECI	CCNNGG	3 cut(s)	200, 635, 717
BssMI	GATC	3 cut(s)	268, 514, 895
BssNI	GRCGYC	1 cut(s)	483
Bst2UI	CCWGG	4 cut(s)	92, 201, 719, 773
Bst4CI	ACNGT	2 cut(s)	611, 659
Bst6I	CTCTTC	1 cut(s)	903
BstACI	GRCGYC	1 cut(s)	483
BstAPI	GCANNNNNTGC	3 cut(s)	250, 318, 713
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	3 cut(s)	115, 646, 709
BstDSI	CCRYGG	1 cut(s)	635
BstF5I	GGATG	5 cut(s)	211, 409, 645, 674, 819
BstH2I	RGCGCY	2 cut(s)	280, 486
BstHHI	GCGC	2 cut(s)	279, 485
BstKTI	GATC	3 cut(s)	271, 517, 898
BstMAI	GTCTC	2 cut(s)	111, 802
BstMBI	GATC	3 cut(s)	268, 514, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	186, 250, 318, 713, 785
BstNI	CCWGG	4 cut(s)	92, 201, 719, 773
BstNSI	RCATGY	1 cut(s)	711
BstSCI	CCNGG	4 cut(s)	90, 199, 717, 771
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	28, 567, 635, 763
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
BtgI	CCRYGG	1 cut(s)	635
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	5 cut(s)	211, 409, 645, 674, 819
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	5 cut(s)	127, 271, 307, 508, 607
Cac8I	GCNNGC	3 cut(s)	115, 646, 709
CfoI	GCGC	2 cut(s)	279, 485
Cfr13I	GGNCC	2 cut(s)	67, 862
CseI	GACGC	2 cut(s)	684, 902
Csp6I	GTAC	2 cut(s)	428, 850
CspCI	CAANNNNNGTGG	2 cut(s)	873, 908
CviAII	CATG	4 cut(s)	222, 708, 869, 905
CviQI	GTAC	2 cut(s)	428, 850
DinI	GGCGCC	1 cut(s)	484
DpnI	GATC	3 cut(s)	270, 516, 897
DpnII	GATC	3 cut(s)	268, 514, 895
DriI	GACNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	903
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	903
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	67, 862
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	862
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	4 cut(s)	90, 199, 717, 771
EcoT38I	GRGCYC	1 cut(s)	119
EgeI	GGCGCC	1 cut(s)	484
EheI	GGCGCC	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	4 cut(s)	225, 711, 872, 908
FatI	CATG	4 cut(s)	221, 707, 868, 904
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	4 cut(s)	17, 581, 649, 777
FokI	GGATG	5 cut(s)	218, 416, 652, 681, 806
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	17, 581, 649, 777
FspBI	CTAG	2 cut(s)	20, 54
GlaI	GCGC	2 cut(s)	278, 484
GluI	GCNGC	4 cut(s)	17, 581, 649, 777
GsuI	CTGGAG	1 cut(s)	103
HaeII	RGCGCY	2 cut(s)	280, 486
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	2 cut(s)	684, 902
HhaI	GCGC	2 cut(s)	279, 485
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	4 cut(s)	225, 711, 872, 908
Hin6I	GCGC	2 cut(s)	277, 483
HinP1I	GCGC	2 cut(s)	277, 483
HinfI	GANTC	3 cut(s)	98, 347, 798
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	210
Hpy188I	TCNGA	4 cut(s)	386, 468, 795, 918
Hpy188III	TCNNGA	5 cut(s)	266, 490, 823, 841, 899
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	5 cut(s)	284, 496, 628, 838, 875
HpyCH4III	ACNGT	2 cut(s)	611, 659
HpyCH4V	TGCA	8 cut(s)	16, 231, 253, 312, 321, 446, 461, 555
HpyF10VI	GCNNNNNNNGC	5 cut(s)	186, 250, 318, 713, 785
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	225, 711, 872, 908
HspAI	GCGC	2 cut(s)	277, 483
KasI	GGCGCC	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	268, 514, 895
LguI	GCTCTTC	1 cut(s)	903
LmnI	GCTCC	3 cut(s)	122, 158, 263
Lsp1109I	GCAGC	4 cut(s)	28, 567, 635, 763
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	20, 54
MaeIII	GTNAC	2 cut(s)	59, 875
MalI	GATC	3 cut(s)	270, 516, 897
MboI	GATC	3 cut(s)	268, 514, 895
MboII	GAAGA	3 cut(s)	149, 329, 920
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	6 cut(s)	329, 380, 387, 438, 447, 493
Mly113I	GGCGCC	1 cut(s)	483
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	873
MnlI	CCTC	6 cut(s)	81, 166, 349, 697, 825, 853
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	226
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	4 cut(s)	92, 201, 719, 773
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	4 cut(s)	92, 201, 719, 773
MwoI	GCNNNNNNNGC	5 cut(s)	186, 250, 318, 713, 785
NarI	GGCGCC	1 cut(s)	483
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	3 cut(s)	268, 514, 895
NlaIII	CATG	4 cut(s)	225, 711, 872, 908
NlaIV	GGNNCC	5 cut(s)	45, 69, 154, 484, 897
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	711
PaeI	GCATGC	1 cut(s)	711
PciSI	GCTCTTC	1 cut(s)	903
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	2 cut(s)	347, 798
PkrI	GCNGC	4 cut(s)	18, 582, 650, 778
PleI	GAGTC	1 cut(s)	106
PluTI	GGCGCC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	862
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	862
Psp6I	CCWGG	4 cut(s)	90, 199, 717, 771
PspGI	CCWGG	4 cut(s)	90, 199, 717, 771
PspN4I	GGNNCC	5 cut(s)	45, 69, 154, 484, 897
PspPI	GGNCC	2 cut(s)	67, 862
PspPPI	RGGWCCY	1 cut(s)	862
PsuI	RGATCY	1 cut(s)	895
RsaI	GTAC	2 cut(s)	429, 851
RsaNI	GTAC	2 cut(s)	428, 850
RseI	CAYNNNNRTG	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	903
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	17, 581, 649, 777
Sau3AI	GATC	3 cut(s)	268, 514, 895
Sau96I	GGNCC	2 cut(s)	67, 862
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	4 cut(s)	92, 201, 719, 773
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	7 cut(s)	21, 119, 144, 260, 365, 763, 867
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	77
SfoI	GGCGCC	1 cut(s)	484
SinI	GGWCC	2 cut(s)	67, 862
SmiMI	CAYNNNNRTG	1 cut(s)	226
SmlI	CTYRAG	2 cut(s)	143, 926
SmoI	CTYRAG	2 cut(s)	143, 926
SphI	GCATGC	1 cut(s)	711
Sse9I	AATT	6 cut(s)	329, 380, 387, 438, 447, 493
SsiI	CCGC	1 cut(s)	35
SspDI	GGCGCC	1 cut(s)	482
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	2 cut(s)	20, 54
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	4 cut(s)	90, 199, 717, 771
TaaI	ACNGT	2 cut(s)	611, 659
TaqI	TCGA	1 cut(s)	340
TasI	AATT	6 cut(s)	329, 380, 387, 438, 447, 493
TatI	WGTACW	2 cut(s)	427, 849
TfiI	GAWTC	2 cut(s)	347, 798
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	5 cut(s)	127, 278, 314, 508, 614
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	4 cut(s)	16, 580, 648, 776
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	6 cut(s)	17, 150, 323, 486, 857, 921
TspGWI	ACGGA	1 cut(s)	652
TspRI	CASTG	5 cut(s)	127, 278, 314, 508, 614
VpaK11BI	GGWCC	2 cut(s)	67, 862
XapI	RAATTY	3 cut(s)	380, 387, 493
XceI	RCATGY	1 cut(s)	711
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	2 cut(s)	20, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.