Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Reverse (-)

3164911 .. 3167996

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG044400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAAGGGGGAAGTGCAGCTAGAACCAGTAGTTGCGGAACGGGAACCGAACCCTAGTAGTGACTTGGACCCTCTGCTCCAGAACACCAACCAGGACGACGACGAGTCGTCGTCTCCGGCGAGCTCCAGTGAGATTAGGAATGAAGACCTTGAGAATGGCTCCTCCATTGCTTGTTGTCGCATTTGCCTCGAAAGCGATGCTGAACCAGGGGATGAGTTGATTTCACCATGCTTGTGCAAAGGCACACAGCAGTTTGTGCATAGCTCCTGTCTTGATCACTGGCGCTCTGTTAAGGAAGGATTTGCTTTCTCGCACTGCACAACTTGCAAAGCCCAATTTCATCTTCGAGTTGAATCATATGAGGACAACTCTTGGCGTAAAATAAAATTCAGAATTTTTGTGGCAAGGGATGTTTTCCTTGTATTTGTGGCTGTACAAACAATAATTGCTGCAATTGGTGGCTTTGCATATCTGATGGACAAAGATGGTGCCTTCAGGAATTCATTCAGTGATGGTTGGGATCGTATCTTGTCAAAACACCCTATACCATTTTATTATTGCATAGGGGTCTTGGCGTTTTTTGTGCTGCTTGGGTTTTTTGGGCTTATACTACATTGTTCAGCCTTCAATAGCAATGACCCACGGATGGCTGGCTGCCAGAACTGTTGTTATGGATGGGGAATATTGGATTGTTTCCCTGCGTCTATGGAGGCATGCTTTGCCCTGGTTATTGTTTTTGTTGTCATCTTTGCTATTCTTGGCATAGCTTATGGTTTCCTGGCTGCTACTATGGCTATTCAGAGAATCTGGCAGAGACATTACCACATCCTGACCAAGAGGGAACTCACGAAGGTTAGTTGCAGACACTCAGTAGTTTTCCATGAACTATTATCTGAAAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

301

Amino Acids

33.89

Weight (kDa)

5.45

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	59 - 109	6.8e-11	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	488
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	528
AcsI	RAATTY	3 cut(s)	386, 393, 499
AcuI	CTGAAG	1 cut(s)	478
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	1 cut(s)	646
AgsI	TTSAA	2 cut(s)	353, 628
AhdI	GACNNNNNGTC	2 cut(s)	103, 106
AjnI	CCWGG	4 cut(s)	90, 205, 723, 777
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	4 cut(s)	19, 123, 264, 767
AluI	AGCT	4 cut(s)	19, 123, 264, 767
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	117, 808
AlwI	GGATC	1 cut(s)	528
ApeKI	GCWGC	5 cut(s)	16, 449, 586, 654, 782
ApoI	RAATTY	3 cut(s)	386, 393, 499
Asp700I	GAANNNNTTC	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	5 cut(s)	28, 436, 573, 641, 769
BccI	CCATC	5 cut(s)	469, 479, 506, 640, 669
BcgI	CGANNNNNNTGC	4 cut(s)	169, 179, 203, 213
BciT130I	CCWGG	4 cut(s)	92, 207, 725, 779
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	117, 808
BfaI	CTAG	2 cut(s)	20, 54
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	5 cut(s)	17, 450, 587, 655, 783
BlsI	GCNGC	5 cut(s)	18, 451, 588, 656, 784
Bme1390I	CCNGG	4 cut(s)	92, 207, 725, 779
Bme18I	GGWCC	1 cut(s)	67
BmeRI	GACNNNNNGTC	2 cut(s)	103, 106
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	4 cut(s)	45, 69, 160, 490
BmrFI	CCNGG	4 cut(s)	92, 207, 725, 779
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	4 cut(s)	143, 175, 353, 385
BpmI	CTGGAG	2 cut(s)	62, 109
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	206, 641, 723
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse1I	ACTGG	3 cut(s)	26, 126, 284
Bse3DI	GCAATG	2 cut(s)	165, 640
BseBI	CCWGG	4 cut(s)	92, 207, 725, 779
BseDI	CCNNGG	3 cut(s)	206, 641, 723
BseGI	GGATG	5 cut(s)	217, 415, 651, 680, 825
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMI	GCAATG	2 cut(s)	165, 640
BseMII	CTCAG	1 cut(s)	882
BseNI	ACTGG	3 cut(s)	26, 126, 284
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	5 cut(s)	28, 436, 573, 641, 769
BsgI	GTGCAG	2 cut(s)	35, 301
BshNI	GGYRCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	2 cut(s)	117, 808
BsmBI	CGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	433
Bsp143I	GATC	2 cut(s)	274, 520
BspACI	CCGC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	881
BspLI	GGNNCC	4 cut(s)	45, 69, 160, 490
BspPI	GGATC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	488
BsrDI	GCAATG	2 cut(s)	165, 640
BsrGI	TGTACA	1 cut(s)	433
BsrI	ACTGG	3 cut(s)	26, 126, 284
BssECI	CCNNGG	3 cut(s)	206, 641, 723
BssMI	GATC	2 cut(s)	274, 520
Bst2UI	CCWGG	4 cut(s)	92, 207, 725, 779
Bst4CI	ACNGT	1 cut(s)	665
BstAPI	GCANNNNNTGC	3 cut(s)	256, 324, 719
BstAUI	TGTACA	1 cut(s)	433
BstC8I	GCNNGC	3 cut(s)	121, 652, 715
BstDEI	CTNAG	1 cut(s)	868
BstDSI	CCRYGG	1 cut(s)	641
BstF5I	GGATG	5 cut(s)	217, 415, 651, 680, 825
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	277, 523
BstMAI	GTCTC	2 cut(s)	117, 808
BstMBI	GATC	2 cut(s)	274, 520
BstMWI	GCNNNNNNNGC	5 cut(s)	192, 256, 324, 719, 791
BstNI	CCWGG	4 cut(s)	92, 207, 725, 779
BstNSI	RCATGY	1 cut(s)	717
BstSCI	CCNGG	4 cut(s)	90, 205, 723, 777
BstV1I	GCAGC	5 cut(s)	28, 436, 573, 641, 769
BstV2I	GAAGAC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	641
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	5 cut(s)	217, 415, 651, 680, 825
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	4 cut(s)	133, 277, 313, 514
Cac8I	GCNNGC	3 cut(s)	121, 652, 715
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	690
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	3 cut(s)	228, 714, 881
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	1 cut(s)	868
DpnI	GATC	2 cut(s)	276, 522
DpnII	GATC	2 cut(s)	274, 520
DriI	GACNNNNNGTC	2 cut(s)	103, 106
Eam1105I	GACNNNNNGTC	2 cut(s)	103, 106
Ecl136II	GAGCTC	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	499
EcoRII	CCWGG	4 cut(s)	90, 205, 723, 777
EcoT38I	GRGCYC	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	3 cut(s)	231, 717, 884
FatI	CATG	3 cut(s)	227, 713, 880
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	5 cut(s)	17, 450, 587, 655, 783
FokI	GGATG	5 cut(s)	224, 422, 658, 687, 812
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	5 cut(s)	17, 450, 587, 655, 783
FspBI	CTAG	2 cut(s)	20, 54
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	5 cut(s)	17, 450, 587, 655, 783
GsuI	CTGGAG	2 cut(s)	62, 109
HaeII	RGCGCY	1 cut(s)	286
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	690
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	3 cut(s)	231, 717, 884
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	3 cut(s)	104, 353, 804
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	216
Hpy188I	TCNGA	4 cut(s)	392, 474, 801, 895
Hpy188III	TCNNGA	5 cut(s)	79, 272, 496, 829, 847
Hpy99I	CGWCG	3 cut(s)	101, 104, 112
HpyAV	CCTTC	4 cut(s)	290, 502, 634, 844
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4V	TGCA	9 cut(s)	16, 237, 259, 318, 327, 452, 467, 561, 861
HpyF10VI	GCNNNNNNNGC	5 cut(s)	192, 256, 324, 719, 791
HpyF3I	CTNAG	1 cut(s)	868
Hsp92II	CATG	3 cut(s)	231, 717, 884
HspAI	GCGC	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	274, 520
LmnI	GCTCC	4 cut(s)	81, 128, 164, 269
Lsp1109I	GCAGC	5 cut(s)	28, 436, 573, 641, 769
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	20, 54
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	2 cut(s)	276, 522
MboI	GATC	2 cut(s)	274, 520
MboII	GAAGA	2 cut(s)	155, 335
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	6 cut(s)	335, 386, 393, 444, 453, 499
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	6 cut(s)	81, 172, 197, 355, 703, 831
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	2 cut(s)	291, 904
MslI	CAYNNNNRTG	1 cut(s)	232
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	4 cut(s)	92, 207, 725, 779
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	4 cut(s)	92, 207, 725, 779
MwoI	GCNNNNNNNGC	5 cut(s)	192, 256, 324, 719, 791
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	2 cut(s)	274, 520
NlaIII	CATG	3 cut(s)	231, 717, 884
NlaIV	GGNNCC	4 cut(s)	45, 69, 160, 490
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	717
PaeI	GCATGC	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	353, 804
PkrI	GCNGC	5 cut(s)	18, 451, 588, 656, 784
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	125
Psp6I	CCWGG	4 cut(s)	90, 205, 723, 777
PspGI	CCWGG	4 cut(s)	90, 205, 723, 777
PspN4I	GGNNCC	4 cut(s)	45, 69, 160, 490
PspPI	GGNCC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	291, 904
SatI	GCNGC	5 cut(s)	17, 450, 587, 655, 783
Sau3AI	GATC	2 cut(s)	274, 520
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	4 cut(s)	92, 207, 725, 779
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	6 cut(s)	21, 125, 150, 266, 769, 855
SfaNI	GCATC	1 cut(s)	187
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	717
Sse9I	AATT	6 cut(s)	335, 386, 393, 444, 453, 499
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	2 cut(s)	20, 54
SstI	GAGCTC	1 cut(s)	125
StyD4I	CCNGG	4 cut(s)	90, 205, 723, 777
TaaI	ACNGT	1 cut(s)	665
TaqI	TCGA	2 cut(s)	189, 346
TasI	AATT	6 cut(s)	335, 386, 393, 444, 453, 499
TatI	WGTACW	1 cut(s)	433
TfiI	GAWTC	2 cut(s)	353, 804
Tru1I	TTAA	2 cut(s)	291, 904
Tru9I	TTAA	2 cut(s)	291, 904
TscAI	CASTG	4 cut(s)	133, 284, 320, 514
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	5 cut(s)	16, 449, 586, 654, 782
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	17, 156, 329, 492, 897
TspGWI	ACGGA	1 cut(s)	658
TspRI	CASTG	4 cut(s)	133, 284, 320, 514
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	3 cut(s)	386, 393, 499
XceI	RCATGY	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	2 cut(s)	20, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.