Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Reverse (-)

2878656 .. 2881974

Gene Structure 3319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1038000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAGGGGGAAGTGCAGCTGGGGCCAGCAGGTGAAAGGGAGGGAGGCCGAGACCCTACTGACATCGACCCTCTGCTACAGAACCAGGTTGACTCGTCGCCGGCAAGCTCGAGTGAGATCAACAATGAAGACCTTGAGTCTGGCTCTATTCCCTGCTGTCGAATTTGTCTCGAGAGCGATGCCGAACCAGAGGATGAATTGATTTCACCTTGCATGTGCAAAGGCACCCAGCAGTTTGTTCATAGGTCCTGTCTCGATCACTGGCGCTCTGTTAAAGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCGAATTTCACCTTCGAGTTGAAACATATGAGGACAATACCTGGCGTAAGATAAAATTCAGAGTTTTTGTGGCAAGGGATGTTTTCCTTGTATTTTTAGCAGTACAATCAATAATTGCTGCTATTGGTGGCTTTGCATTTGTCATGGACAAAGATGGTGCATTCAGGAATTCATTTAGTGATGGTTGGGACCGTATCTTGTCAAAACATCCTATACCATTTTATTATTGTATTGGTGTCCTAGGCTTTTTTGTACTGCTTGGATTTTTCGGGCTCATACTACACTGTTCATCGCTCAATAGCAATGACCCACGGATGGCTGGCTGCCAGAACTGTTGCTATGGTTGGGGAATTTTGGATTGTTTCCCAGCGTCTATGGAGGCTTGCTTTGCCCTGGTCATCGTTTTTGTTGTCATCTTTGCCATCCTTGGCATAGCTTATGGTTTCCTTGCCGCCACCATGGCTATTCAGCGGATCTGGCAGCGACATTACCATATCCTGACCAAGAGGGAGCTCACAAAGGAGTATATAGTGGAGGATCTTCATGGATGCTATACCCCACCGAAACTAGATCCCGAACATGAAGCACGTCTGAAAATGCTGAAGTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

309

Amino Acids

34.73

Weight (kDa)

5.58

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	53 - 103	1.1e-11	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	2 cut(s)	20, 314
AccB1I	GGYRCC	1 cut(s)	224
AciI	CCGC	2 cut(s)	765, 784
AclWI	GGATC	3 cut(s)	794, 858, 878
AcsI	RAATTY	5 cut(s)	162, 317, 368, 481, 663
AfaI	GTAC	2 cut(s)	417, 567
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	1 cut(s)	335
AhdI	GACNNNNNGTC	1 cut(s)	136
AjiI	CACGTC	1 cut(s)	902
AjnI	CCWGG	3 cut(s)	84, 353, 705
AluBI	AGCT	4 cut(s)	19, 108, 749, 826
AluI	AGCT	4 cut(s)	19, 108, 749, 826
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	3 cut(s)	45, 173, 257
AlwI	GGATC	3 cut(s)	794, 858, 878
Ama87I	CYCGRG	2 cut(s)	109, 170
AoxI	GGCC	2 cut(s)	23, 46
ApeKI	GCWGC	4 cut(s)	16, 431, 636, 793
ApoI	RAATTY	5 cut(s)	162, 317, 368, 481, 663
AspA2I	CCTAGG	1 cut(s)	553
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	3 cut(s)	23, 246, 502
AsuHPI	GGTGA	3 cut(s)	44, 198, 314
AvaI	CYCGRG	2 cut(s)	109, 170
AvaII	GGWCC	2 cut(s)	246, 502
AvrII	CCTAGG	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	588, 828
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	4 cut(s)	28, 418, 623, 805
BccI	CCATC	4 cut(s)	461, 488, 622, 743
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	3 cut(s)	86, 355, 707
BcoDI	GTCTC	3 cut(s)	45, 173, 257
BfaI	CTAG	2 cut(s)	554, 881
BfmI	CTRYAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	268
BfuAI	ACCTGC	2 cut(s)	20, 314
BglI	GCCNNNNNGGC	1 cut(s)	773
BisI	GCNGC	5 cut(s)	17, 432, 637, 765, 794
BlnI	CCTAGG	1 cut(s)	553
BlsI	GCNGC	5 cut(s)	18, 433, 638, 766, 795
Bme1390I	CCNGG	3 cut(s)	86, 355, 707
Bme18I	GGWCC	2 cut(s)	246, 502
BmeRI	GACNNNNNGTC	1 cut(s)	136
BmeT110I	CYCGRG	2 cut(s)	109, 170
BmgBI	CACGTC	1 cut(s)	902
BmgT120I	GGNCC	3 cut(s)	23, 246, 502
BmiI	GGNNCC	3 cut(s)	24, 226, 503
BmrFI	CCNGG	3 cut(s)	86, 355, 707
BmsI	GCATC	2 cut(s)	169, 851
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpuEI	CTTGAG	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	5 cut(s)	553, 623, 705, 739, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	3 cut(s)	86, 355, 707
BseDI	CCNNGG	5 cut(s)	553, 623, 705, 739, 771
BseGI	GGATG	6 cut(s)	199, 397, 520, 633, 735, 866
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	622
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	4 cut(s)	28, 418, 623, 805
BseYI	CCCAGC	3 cut(s)	19, 228, 679
BsgI	GTGCAG	2 cut(s)	35, 283
BshFI	GGCC	2 cut(s)	25, 48
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	2 cut(s)	109, 170
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	3 cut(s)	45, 173, 257
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	25, 48
Bso31I	GGTCTC	1 cut(s)	45
BsoBI	CYCGRG	2 cut(s)	109, 170
Bsp1286I	GDGCHC	2 cut(s)	588, 828
Bsp143I	GATC	5 cut(s)	117, 256, 786, 850, 883
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	2 cut(s)	765, 784
BspANI	GGCC	2 cut(s)	25, 48
BspLI	GGNNCC	3 cut(s)	24, 226, 503
BspMI	ACCTGC	2 cut(s)	20, 314
BspPI	GGATC	3 cut(s)	794, 858, 878
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	5 cut(s)	553, 623, 705, 739, 771
BssMI	GATC	5 cut(s)	117, 256, 786, 850, 883
BssT1I	CCWWGG	3 cut(s)	553, 739, 771
Bst2UI	CCWGG	3 cut(s)	86, 355, 707
Bst4CI	ACNGT	3 cut(s)	506, 599, 647
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstC8I	GCNNGC	5 cut(s)	27, 102, 106, 634, 697
BstDSI	CCRYGG	2 cut(s)	623, 771
BstF5I	GGATG	6 cut(s)	199, 397, 520, 633, 735, 866
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	5 cut(s)	120, 259, 789, 853, 886
BstMAI	GTCTC	3 cut(s)	45, 173, 257
BstMBI	GATC	5 cut(s)	117, 256, 786, 850, 883
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 306, 701, 773, 790
BstNI	CCWGG	3 cut(s)	86, 355, 707
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	84, 353, 705
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	28, 418, 623, 805
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	3 cut(s)	786, 850, 883
BstYI	RGATCY	3 cut(s)	786, 850, 883
BsuRI	GGCC	2 cut(s)	25, 48
BtgI	CCRYGG	2 cut(s)	623, 771
BtgZI	GCGATG	2 cut(s)	192, 588
BtrI	CACGTC	1 cut(s)	902
BtsCI	GGATG	6 cut(s)	199, 397, 520, 633, 735, 866
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	3 cut(s)	259, 295, 595
BveI	ACCTGC	2 cut(s)	20, 314
Cac8I	GCNNGC	5 cut(s)	27, 102, 106, 634, 697
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	3 cut(s)	23, 246, 502
CseI	GACGC	1 cut(s)	672
CsiI	ACCWGGT	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	416, 566
CviAII	CATG	5 cut(s)	214, 457, 772, 857, 893
CviQI	GTAC	2 cut(s)	416, 566
DpnI	GATC	5 cut(s)	119, 258, 788, 852, 885
DpnII	GATC	5 cut(s)	117, 256, 786, 850, 883
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	826
Eco130I	CCWWGG	3 cut(s)	553, 739, 771
Eco24I	GRGCYC	2 cut(s)	588, 828
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	246, 502
Eco53kI	GAGCTC	1 cut(s)	826
Eco88I	CYCGRG	2 cut(s)	109, 170
EcoICRI	GAGCTC	1 cut(s)	826
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	3 cut(s)	84, 353, 705
EcoT14I	CCWWGG	3 cut(s)	553, 739, 771
EcoT38I	GRGCYC	2 cut(s)	588, 828
ErhI	CCWWGG	3 cut(s)	553, 739, 771
FaeI	CATG	5 cut(s)	217, 460, 775, 860, 896
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	5 cut(s)	213, 456, 771, 856, 892
FauNDI	CATATG	1 cut(s)	340
Fnu4HI	GCNGC	5 cut(s)	17, 432, 637, 765, 794
FokI	GGATG	6 cut(s)	206, 404, 507, 640, 722, 873
FriOI	GRGCYC	2 cut(s)	588, 828
Fsp4HI	GCNGC	5 cut(s)	17, 432, 637, 765, 794
FspBI	CTAG	2 cut(s)	554, 881
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	5 cut(s)	17, 432, 637, 765, 794
GsaI	CCCAGC	3 cut(s)	23, 232, 683
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	25, 48
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	672
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	217, 460, 775, 860, 896
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	92, 137
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	3 cut(s)	44, 198, 314
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	374, 906
Hpy188III	TCNNGA	6 cut(s)	170, 172, 254, 478, 811, 887
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	272, 298, 335
HpyCH4III	ACNGT	3 cut(s)	506, 599, 647
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	7 cut(s)	16, 213, 219, 300, 309, 449, 473
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 306, 701, 773, 790
HpySE526I	ACGT	1 cut(s)	901
Hsp92II	CATG	5 cut(s)	217, 460, 775, 860, 896
HspAI	GCGC	1 cut(s)	265
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	5 cut(s)	117, 256, 786, 850, 883
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	4 cut(s)	28, 418, 623, 805
LweI	GCATC	2 cut(s)	169, 851
MabI	ACCWGGT	1 cut(s)	84
MaeI	CTAG	2 cut(s)	554, 881
MaeII	ACGT	1 cut(s)	901
MalI	GATC	5 cut(s)	119, 258, 788, 852, 885
MboI	GATC	5 cut(s)	117, 256, 786, 850, 883
MboII	GAAGA	2 cut(s)	140, 845
MflI	RGATCY	3 cut(s)	786, 850, 883
MhlI	GDGCHC	2 cut(s)	588, 828
MluCI	AATT	7 cut(s)	162, 197, 317, 368, 426, 481, 663
MlyI	GAGTC	2 cut(s)	86, 146
MnlI	CCTC	8 cut(s)	34, 38, 81, 184, 337, 685, 813, 841
MroNI	GCCGGC	1 cut(s)	100
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	19, 784
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	3 cut(s)	86, 355, 707
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	3 cut(s)	86, 355, 707
MwoI	GCNNNNNNNGC	5 cut(s)	22, 306, 701, 773, 790
NaeI	GCCGGC	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	5 cut(s)	117, 256, 786, 850, 883
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	5 cut(s)	217, 460, 775, 860, 896
NlaIV	GGNNCC	3 cut(s)	24, 226, 503
NmeAIII	GCCGAG	1 cut(s)	74
NspI	RCATGY	1 cut(s)	217
PaeR7I	CTCGAG	2 cut(s)	109, 170
PaqCI	CACCTGC	1 cut(s)	20
PctI	GAATGC	1 cut(s)	473
PdiI	GCCGGC	1 cut(s)	102
PkrI	GCNGC	5 cut(s)	18, 433, 638, 766, 795
PleI	GAGTC	2 cut(s)	86, 145
PpsI	GAGTC	2 cut(s)	86, 145
PpuMI	RGGWCCY	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	828
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	3 cut(s)	84, 353, 705
PspFI	CCCAGC	3 cut(s)	19, 228, 679
PspGI	CCWGG	3 cut(s)	84, 353, 705
PspN4I	GGNNCC	3 cut(s)	24, 226, 503
PspPI	GGNCC	3 cut(s)	23, 246, 502
PspPPI	RGGWCCY	1 cut(s)	246
PspXI	VCTCGAGB	1 cut(s)	109
PsuI	RGATCY	3 cut(s)	786, 850, 883
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	417, 567
RsaNI	GTAC	2 cut(s)	416, 566
SacI	GAGCTC	1 cut(s)	828
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	5 cut(s)	17, 432, 637, 765, 794
Sau3AI	GATC	5 cut(s)	117, 256, 786, 850, 883
Sau96I	GGNCC	3 cut(s)	23, 246, 502
SchI	GAGTC	2 cut(s)	86, 146
ScrFI	CCNGG	3 cut(s)	86, 355, 707
SduI	GDGCHC	2 cut(s)	588, 828
SexAI	ACCWGGT	1 cut(s)	84
SfaNI	GCATC	2 cut(s)	169, 851
SfcI	CTRYAG	1 cut(s)	77
Sfr274I	CTCGAG	2 cut(s)	109, 170
SinI	GGWCC	2 cut(s)	246, 502
SlaI	CTCGAG	2 cut(s)	109, 170
SmlI	CTYRAG	3 cut(s)	109, 134, 170
SmoI	CTYRAG	3 cut(s)	109, 134, 170
Sse9I	AATT	7 cut(s)	162, 197, 317, 368, 426, 481, 663
SsiI	CCGC	2 cut(s)	765, 784
SspMI	CTAG	2 cut(s)	554, 881
SstI	GAGCTC	1 cut(s)	828
StyD4I	CCNGG	3 cut(s)	84, 353, 705
StyI	CCWWGG	3 cut(s)	553, 739, 771
TaaI	ACNGT	3 cut(s)	506, 599, 647
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	6 cut(s)	66, 110, 160, 171, 255, 328
TasI	AATT	7 cut(s)	162, 197, 317, 368, 426, 481, 663
TatI	WGTACW	2 cut(s)	415, 565
TauI	GCSGC	1 cut(s)	767
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	3 cut(s)	266, 302, 602
TseI	GCWGC	4 cut(s)	16, 431, 636, 793
TspDTI	ATGAA	8 cut(s)	17, 141, 210, 230, 474, 591, 845, 909
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	3 cut(s)	266, 302, 602
VpaK11BI	GGWCC	2 cut(s)	246, 502
XapI	RAATTY	5 cut(s)	162, 317, 368, 481, 663
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	2 cut(s)	109, 170
XmaJI	CCTAGG	1 cut(s)	553
XspI	CTAG	2 cut(s)	554, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.