Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000197.1

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Forward (+)

40938 .. 43245

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000197.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgaagggggaagtgcagctagaaccagttgttgcggaacgggaacccaaccctagtagtgacttggaccctctgctacagaacaccaaccaggacgacgacgacgacgagtcgtcgtctccggcgagctccagtgagattaggaatgaagaccttgagaatggctcctctattgcttgttgtcgcatttgccttgaaagcgatgctgaaccaggggatgagttgatttcaccatgcttgtgcaaaggcacacagcagtttgtgcatagctcctgtcttgatcactggcgctctgttaaggaaggatttgctttctcgcactgcacaacttgcaaagcccaatttcatcttcgagttgaatcatatgaggacaactcttggcgtaaaataaaattcagaatttttgtggcaagggatgttttccttgtatttgtggctgtacaaacaataattactgcaattggtggctttgcatatctgatggacaaagatggcgccttcaggaattcattcagtgatggttgggatcgtatcttgtcaaaacaccctataccattttattattgcataggggtcttggcgttttttgtgctgcttgggttttttgggcttatactacactgttcagccttcaatagcaatgacccacggatggctggctgccagaactgttgttatggatggggaatattggattgtttccctgcgtctatggaggcatgctttgccctggttattgtttttgttgtcatctttgctattcttggcatagcttatggtttcctggctgctactatggctattcagagaatctggcagagacattaccacatcctgaccaagagggaactcacgaaggagtacatagtggaggaccttcatggttgttacaccccaccaaagttggatcctgaacatgaagagcgtctgaaaatgctcaagttattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

316

Amino Acids

35.74

Weight (kDa)

5.13

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	534, 902, 915
AcsI	RAATTY	3 cut(s)	392, 399, 505
AcuI	CTGAAG	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	495
AfaI	GTAC	2 cut(s)	441, 863
AfiI	CCNNNNNNNGG	1 cut(s)	652
AgsI	TTSAA	3 cut(s)	197, 359, 634
AhdI	GACNNNNNGTC	2 cut(s)	109, 112
AjnI	CCWGG	4 cut(s)	90, 211, 729, 783
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	19, 129, 270, 773
AluI	AGCT	4 cut(s)	19, 129, 270, 773
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	2 cut(s)	123, 814
AlwI	GGATC	3 cut(s)	534, 902, 915
ApeKI	GCWGC	4 cut(s)	16, 592, 660, 788
ApoI	RAATTY	3 cut(s)	392, 399, 505
Asp700I	GAANNNNTTC	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	291, 497
AspS9I	GGNCC	2 cut(s)	67, 874
AsuHPI	GGTGA	1 cut(s)	222
AvaII	GGWCC	2 cut(s)	67, 874
BamHI	GGATCC	1 cut(s)	907
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	4 cut(s)	28, 579, 647, 775
BccI	CCATC	5 cut(s)	475, 485, 512, 646, 675
BciT130I	CCWGG	4 cut(s)	92, 213, 731, 785
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	123, 814
BfaI	CTAG	2 cut(s)	20, 54
BfmI	CTRYAG	1 cut(s)	77
BfoI	RGCGCY	2 cut(s)	292, 498
BisI	GCNGC	4 cut(s)	17, 593, 661, 789
BlsI	GCNGC	4 cut(s)	18, 594, 662, 790
Bme1390I	CCNGG	4 cut(s)	92, 213, 731, 785
Bme18I	GGWCC	2 cut(s)	67, 874
BmeRI	GACNNNNNGTC	2 cut(s)	109, 112
BmgT120I	GGNCC	2 cut(s)	67, 874
BmiI	GGNNCC	5 cut(s)	45, 69, 166, 496, 909
BmrFI	CCNGG	4 cut(s)	92, 213, 731, 785
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	156
BplI	GAGNNNNNCTC	4 cut(s)	149, 181, 359, 391
BpmI	CTGGAG	1 cut(s)	115
BpuEI	CTTGAG	2 cut(s)	176, 923
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	212, 647, 729
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	3 cut(s)	26, 132, 290
Bse3DI	GCAATG	1 cut(s)	646
BseBI	CCWGG	4 cut(s)	92, 213, 731, 785
BseDI	CCNNGG	3 cut(s)	212, 647, 729
BseGI	GGATG	5 cut(s)	223, 421, 657, 686, 831
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	1 cut(s)	646
BseNI	ACTGG	3 cut(s)	26, 132, 290
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	4 cut(s)	28, 579, 647, 775
BsgI	GTGCAG	2 cut(s)	35, 307
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	2 cut(s)	123, 814
BsmBI	CGTCTC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	280, 526, 907
BspACI	CCGC	1 cut(s)	35
BspLI	GGNNCC	5 cut(s)	45, 69, 166, 496, 909
BspPI	GGATC	3 cut(s)	534, 902, 915
BspQI	GCTCTTC	1 cut(s)	915
BspT107I	GGYRCC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	646
BsrGI	TGTACA	1 cut(s)	439
BsrI	ACTGG	3 cut(s)	26, 132, 290
BssECI	CCNNGG	3 cut(s)	212, 647, 729
BssMI	GATC	3 cut(s)	280, 526, 907
BssNI	GRCGYC	1 cut(s)	495
Bst2UI	CCWGG	4 cut(s)	92, 213, 731, 785
Bst4CI	ACNGT	2 cut(s)	623, 671
Bst6I	CTCTTC	1 cut(s)	915
BstACI	GRCGYC	1 cut(s)	495
BstAPI	GCANNNNNTGC	3 cut(s)	262, 330, 725
BstAUI	TGTACA	1 cut(s)	439
BstC8I	GCNNGC	3 cut(s)	127, 658, 721
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	5 cut(s)	223, 421, 657, 686, 831
BstH2I	RGCGCY	2 cut(s)	292, 498
BstHHI	GCGC	2 cut(s)	291, 497
BstKTI	GATC	3 cut(s)	283, 529, 910
BstMAI	GTCTC	2 cut(s)	123, 814
BstMBI	GATC	3 cut(s)	280, 526, 907
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 262, 330, 725, 797
BstNI	CCWGG	4 cut(s)	92, 213, 731, 785
BstNSI	RCATGY	1 cut(s)	723
BstSCI	CCNGG	4 cut(s)	90, 211, 729, 783
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	28, 579, 647, 775
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	907
BtgI	CCRYGG	1 cut(s)	647
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	5 cut(s)	223, 421, 657, 686, 831
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	5 cut(s)	139, 283, 319, 520, 619
Cac8I	GCNNGC	3 cut(s)	127, 658, 721
CfoI	GCGC	2 cut(s)	291, 497
Cfr13I	GGNCC	2 cut(s)	67, 874
CseI	GACGC	2 cut(s)	696, 914
Csp6I	GTAC	2 cut(s)	440, 862
CspCI	CAANNNNNGTGG	2 cut(s)	885, 920
CviAII	CATG	4 cut(s)	234, 720, 881, 917
CviQI	GTAC	2 cut(s)	440, 862
DinI	GGCGCC	1 cut(s)	496
DpnI	GATC	3 cut(s)	282, 528, 909
DpnII	GATC	3 cut(s)	280, 526, 907
DriI	GACNNNNNGTC	2 cut(s)	109, 112
Eam1104I	CTCTTC	1 cut(s)	915
Eam1105I	GACNNNNNGTC	2 cut(s)	109, 112
EarI	CTCTTC	1 cut(s)	915
Ecl136II	GAGCTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	67, 874
Eco53kI	GAGCTC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	484
EcoICRI	GAGCTC	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	874
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	4 cut(s)	90, 211, 729, 783
EcoT38I	GRGCYC	1 cut(s)	131
EgeI	GGCGCC	1 cut(s)	496
EheI	GGCGCC	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	4 cut(s)	237, 723, 884, 920
FatI	CATG	4 cut(s)	233, 719, 880, 916
FauNDI	CATATG	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	4 cut(s)	17, 593, 661, 789
FokI	GGATG	5 cut(s)	230, 428, 664, 693, 818
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	17, 593, 661, 789
FspBI	CTAG	2 cut(s)	20, 54
GlaI	GCGC	2 cut(s)	290, 496
GluI	GCNGC	4 cut(s)	17, 593, 661, 789
GsuI	CTGGAG	1 cut(s)	115
HaeII	RGCGCY	2 cut(s)	292, 498
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	2 cut(s)	696, 914
HhaI	GCGC	2 cut(s)	291, 497
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	4 cut(s)	237, 723, 884, 920
Hin6I	GCGC	2 cut(s)	289, 495
HinP1I	GCGC	2 cut(s)	289, 495
HinfI	GANTC	3 cut(s)	110, 359, 810
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	222
Hpy188I	TCNGA	4 cut(s)	398, 480, 807, 930
Hpy188III	TCNNGA	5 cut(s)	278, 502, 835, 853, 911
Hpy99I	CGWCG	5 cut(s)	101, 104, 107, 110, 118
HpyAV	CCTTC	5 cut(s)	296, 508, 640, 850, 887
HpyCH4III	ACNGT	2 cut(s)	623, 671
HpyCH4V	TGCA	8 cut(s)	16, 243, 265, 324, 333, 458, 473, 567
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 262, 330, 725, 797
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	4 cut(s)	237, 723, 884, 920
HspAI	GCGC	2 cut(s)	289, 495
KasI	GGCGCC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	280, 526, 907
LguI	GCTCTTC	1 cut(s)	915
LmnI	GCTCC	3 cut(s)	134, 170, 275
Lsp1109I	GCAGC	4 cut(s)	28, 579, 647, 775
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	20, 54
MaeIII	GTNAC	2 cut(s)	59, 887
MalI	GATC	3 cut(s)	282, 528, 909
MboI	GATC	3 cut(s)	280, 526, 907
MboII	GAAGA	3 cut(s)	161, 341, 932
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	907
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	6 cut(s)	341, 392, 399, 450, 459, 505
Mly113I	GGCGCC	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	885
MnlI	CCTC	6 cut(s)	81, 178, 361, 709, 837, 865
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	238
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	4 cut(s)	92, 213, 731, 785
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	4 cut(s)	92, 213, 731, 785
MwoI	GCNNNNNNNGC	5 cut(s)	198, 262, 330, 725, 797
NarI	GGCGCC	1 cut(s)	495
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	3 cut(s)	280, 526, 907
NlaIII	CATG	4 cut(s)	237, 723, 884, 920
NlaIV	GGNNCC	5 cut(s)	45, 69, 166, 496, 909
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	723
PaeI	GCATGC	1 cut(s)	723
PciSI	GCTCTTC	1 cut(s)	915
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 105, 122
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	359, 810
PkrI	GCNGC	4 cut(s)	18, 594, 662, 790
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	874
Psp124BI	GAGCTC	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	874
Psp6I	CCWGG	4 cut(s)	90, 211, 729, 783
PspGI	CCWGG	4 cut(s)	90, 211, 729, 783
PspN4I	GGNNCC	5 cut(s)	45, 69, 166, 496, 909
PspPI	GGNCC	2 cut(s)	67, 874
PspPPI	RGGWCCY	1 cut(s)	874
PsuI	RGATCY	1 cut(s)	907
RsaI	GTAC	2 cut(s)	441, 863
RsaNI	GTAC	2 cut(s)	440, 862
RseI	CAYNNNNRTG	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	17, 593, 661, 789
Sau3AI	GATC	3 cut(s)	280, 526, 907
Sau96I	GGNCC	2 cut(s)	67, 874
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	4 cut(s)	92, 213, 731, 785
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	6 cut(s)	21, 131, 156, 272, 775, 879
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	77
SfoI	GGCGCC	1 cut(s)	496
SinI	GGWCC	2 cut(s)	67, 874
SmiMI	CAYNNNNRTG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	155, 938
SmoI	CTYRAG	2 cut(s)	155, 938
SphI	GCATGC	1 cut(s)	723
Sse9I	AATT	6 cut(s)	341, 392, 399, 450, 459, 505
SsiI	CCGC	1 cut(s)	35
SspDI	GGCGCC	1 cut(s)	494
SspI	AATATT	1 cut(s)	690
SspMI	CTAG	2 cut(s)	20, 54
SstI	GAGCTC	1 cut(s)	131
StyD4I	CCNGG	4 cut(s)	90, 211, 729, 783
TaaI	ACNGT	2 cut(s)	623, 671
TaqI	TCGA	1 cut(s)	352
TasI	AATT	6 cut(s)	341, 392, 399, 450, 459, 505
TatI	WGTACW	2 cut(s)	439, 861
TfiI	GAWTC	2 cut(s)	359, 810
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	5 cut(s)	139, 290, 326, 520, 626
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	4 cut(s)	16, 592, 660, 788
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	6 cut(s)	17, 162, 335, 498, 869, 933
TspGWI	ACGGA	1 cut(s)	664
TspRI	CASTG	5 cut(s)	139, 290, 326, 520, 626
VpaK11BI	GGWCC	2 cut(s)	67, 874
XapI	RAATTY	3 cut(s)	392, 399, 505
XceI	RCATGY	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	2 cut(s)	20, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.