Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Reverse (-)

38160667 .. 38162593

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTGTAAACGAATTTTTCTCTGGGTTTCACAAGAGGAGGAAGAAGAGAAGAAGCAATGGGAGGCTCTCAGGCAAAAAGGGGATGAGTTGATCTCACCATGCTTTTGCAAAGGCACCCAGCAGTTTGTGCATACATCCTGTCTTGATCACTGGCGCTCGGTTAAGGGAATTACCGCAATTGGTGGCTTTGCATATTTGATGGACAAAGATGGTGGCTTCAGGAATTCATTCAGTGATGGTTGGGATCGTATATTGTCAAAGCACTCTATACCATTTTACTATTGCATAGCATCGATAGCATCGACAGCAGTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

106

Amino Acids

12.07

Weight (kDa)

6.81

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	26 - 53	5.6e-08	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	252
AcsI	RAATTY	2 cut(s)	12, 223
AcuI	CTGAAG	1 cut(s)	202
AlwI	GGATC	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	12, 223
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	113
BccI	CCATC	3 cut(s)	193, 203, 230
BclI	TGATCA	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	115
BmsI	GCATC	2 cut(s)	299, 308
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bsa29I	ATCGAT	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	293
BseGI	GGATG	2 cut(s)	88, 134
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	293
Bsp143I	GATC	3 cut(s)	90, 145, 244
BspACI	CCGC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	81
BspDI	ATCGAT	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	3 cut(s)	90, 145, 244
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	88, 134
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	93, 148, 247
BstMBI	GATC	3 cut(s)	90, 145, 244
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 296, 305
Bsu15I	ATCGAT	1 cut(s)	293
BsuTUI	ATCGAT	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	88, 134
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	3 cut(s)	148, 238, 315
CfoI	GCGC	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	293
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	3 cut(s)	65, 186, 216
CviKI_1	RGCY	3 cut(s)	65, 186, 216
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	92, 147, 246
DpnII	GATC	3 cut(s)	90, 145, 244
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	223
FaeI	CATG	1 cut(s)	102
FaiI	YATR	7 cut(s)	100, 132, 193, 251, 269, 287, 316
FatI	CATG	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	145
FokI	GGATG	2 cut(s)	95, 121
GlaI	GCGC	1 cut(s)	155
GsaI	CCCAGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	157
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188III	TCNNGA	2 cut(s)	143, 220
Hpy8I	GTNNAC	1 cut(s)	8
HpyCH4V	TGCA	4 cut(s)	108, 130, 191, 285
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 296, 305
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	1 cut(s)	102
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	90, 145, 244
LpnPI	CCDG	6 cut(s)	7, 55, 131, 136, 151, 205
LweI	GCATC	2 cut(s)	299, 308
MalI	GATC	3 cut(s)	92, 147, 246
MboI	GATC	3 cut(s)	90, 145, 244
MboII	GAAGA	3 cut(s)	53, 56, 61
MfeI	CAATTG	1 cut(s)	177
MluCI	AATT	4 cut(s)	12, 168, 177, 223
MnlI	CCTC	3 cut(s)	28, 31, 55
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	162
MunI	CAATTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	127, 296, 305
NdeII	GATC	3 cut(s)	90, 145, 244
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	90, 145, 244
SfaNI	GCATC	2 cut(s)	299, 308
Sse9I	AATT	4 cut(s)	12, 168, 177, 223
SsiI	CCGC	1 cut(s)	174
TaqI	TCGA	2 cut(s)	293, 302
TasI	AATT	4 cut(s)	12, 168, 177, 223
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	3 cut(s)	155, 238, 315
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	3 cut(s)	155, 238, 315
XapI	RAATTY	2 cut(s)	12, 223
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.