Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Reverse (-)

14033956 .. 14036776

Gene Structure 2821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1178300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAAGGGGAAGTGCAGCTGGAGCCAACAGGTGAAGGGGAGCGAGACCGAGACCCTACTGACATCGAGCCTCTGCTACCGAACCAGGACGATTCGTCGCCGGCAAGCTCGAGTGAGATCAACAACGAAGACCTTGAGTCTGGCTCTTTCCCTTGCTGTCGCATTTGTCTCGAAAGCGATGCCGAACCAGAGGATGAATTGATTTCACCTTGCATGTGCAAAGGCACCCAGCAGTTTGTTCATAGGTCCTGTCTCGATCACTGGCGCTCCATTAAAGAAGGATTTGCTTTCTCACACTGCACAACTTGCAAAGCCCAATTTCACCTTCGAGTTGAGACATATGAGGACAATGTCTGGCGCAAAATAAAATTCCGAGTTTTTGTGGCGAGGGATGTTTTCCTCGTGTTTTTGGCTGTACAATCAGTTATAGCTGCAATTGGTGGCTTTGCATATGTCATGGACAAAGATGGGGCCTTCAGGAATTCATTTAGTGATGGTTGGGATCGTATTTTGTCAAAACATCCTATACCATTTTATTATTGTATAGGGGTACTGGCCTTCTTTGTGCTGCTTGGATTTTTCGGGCTCATACTACACTGTTCATCGTTCAATAGCAATGACCCACGGATGGCCGGGTGCCAGAACTGTTGCTATGGTTGGGGAATCTTGGATTGTTTCCCCGCATCTATGGAGGCTTGCTTTACCCTCGTGATTGTGTTTGTTGTCATCTTTGCCATTCTTGGCATAGCTTATGGTTTCCTGGCCGCTACCATGGCTATTCAGAGGATTTGGCAGAGACATTATCACATCCTGACCAAGAGGGAACTCACAAAGGAGTATATAGTGGAGGATCTTCATGGATGCTATACCCCACCAAAACTAGATGCCGAACATGAAGCGCGTCTGAAAATGCTGAAGTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

309

Amino Acids

34.99

Weight (kDa)

5.38

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	53 - 103	6.6e-12	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 636
AccII	CGCG	1 cut(s)	901
AciI	CCGC	2 cut(s)	681, 765
AclWI	GGATC	2 cut(s)	510, 858
AcoI	YGGCCR	2 cut(s)	630, 762
AcsI	RAATTY	2 cut(s)	368, 481
AcuI	CTGAAG	1 cut(s)	460
AfaI	GTAC	2 cut(s)	417, 552
AfiI	CCNNNNNNNGG	1 cut(s)	628
AgsI	TTSAA	1 cut(s)	610
AhdI	GACNNNNNGTC	2 cut(s)	94, 136
AjnI	CCWGG	2 cut(s)	84, 759
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	4 cut(s)	19, 108, 431, 749
AluI	AGCT	4 cut(s)	19, 108, 431, 749
Alw26I	GTCTC	6 cut(s)	39, 45, 173, 257, 329, 790
AlwI	GGATC	2 cut(s)	510, 858
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	4 cut(s)	471, 555, 630, 762
ApeKI	GCWGC	3 cut(s)	16, 431, 568
ApoI	RAATTY	2 cut(s)	368, 481
AspLEI	GCGC	3 cut(s)	267, 360, 901
AspS9I	GGNCC	2 cut(s)	246, 471
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	44, 198, 314
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	224, 636
BanII	GRGCYC	1 cut(s)	588
BauI	CACGAG	2 cut(s)	401, 707
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	28, 418, 555
BccI	CCATC	3 cut(s)	461, 488, 622
BcgI	CGANNNNNNTGC	4 cut(s)	151, 161, 185, 195
BciT130I	CCWGG	2 cut(s)	86, 761
BcnI	CCSGG	1 cut(s)	634
BcoDI	GTCTC	6 cut(s)	39, 45, 173, 257, 329, 790
BfaI	CTAG	1 cut(s)	881
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	4 cut(s)	17, 432, 569, 765
BlsI	GCNGC	4 cut(s)	18, 433, 570, 766
Bme1390I	CCNGG	3 cut(s)	86, 634, 761
Bme18I	GGWCC	1 cut(s)	246
BmeRI	GACNNNNNGTC	2 cut(s)	94, 136
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	246, 471
BmiI	GGNNCC	4 cut(s)	24, 226, 472, 638
BmrFI	CCNGG	3 cut(s)	86, 634, 761
BmsI	GCATC	4 cut(s)	169, 692, 851, 874
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	634
BsaI	GGTCTC	2 cut(s)	39, 45
BsaJI	CCNNGG	2 cut(s)	623, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	266, 558
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	2 cut(s)	86, 761
BseDI	CCNNGG	2 cut(s)	623, 771
BseGI	GGATG	6 cut(s)	199, 397, 520, 633, 807, 866
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMI	GCAATG	1 cut(s)	622
BseNI	ACTGG	2 cut(s)	266, 558
BseXI	GCAGC	3 cut(s)	28, 418, 555
BseYI	CCCAGC	1 cut(s)	228
BsgI	GTGCAG	2 cut(s)	35, 283
Bsh1236I	CGCG	1 cut(s)	901
BshFI	GGCC	4 cut(s)	473, 557, 632, 764
BshNI	GGYRCC	2 cut(s)	224, 636
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	101, 633
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	6 cut(s)	39, 45, 173, 257, 329, 790
BsnI	GGCC	4 cut(s)	473, 557, 632, 764
Bso31I	GGTCTC	2 cut(s)	39, 45
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	4 cut(s)	117, 256, 502, 850
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	2 cut(s)	681, 765
BspANI	GGCC	4 cut(s)	473, 557, 632, 764
BspFNI	CGCG	1 cut(s)	901
BspLI	GGNNCC	4 cut(s)	24, 226, 472, 638
BspPI	GGATC	2 cut(s)	510, 858
BspT107I	GGYRCC	2 cut(s)	224, 636
BspTNI	GGTCTC	2 cut(s)	39, 45
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	266, 558
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	623, 771
BssMI	GATC	4 cut(s)	117, 256, 502, 850
BssSI	CACGAG	2 cut(s)	401, 707
BssT1I	CCWWGG	1 cut(s)	771
Bst2BI	CACGAG	2 cut(s)	401, 707
Bst2UI	CCWGG	2 cut(s)	86, 761
Bst4CI	ACNGT	2 cut(s)	599, 647
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	415
BstC8I	GCNNGC	3 cut(s)	102, 106, 697
BstDSI	CCRYGG	2 cut(s)	623, 771
BstF5I	GGATG	6 cut(s)	199, 397, 520, 633, 807, 866
BstFNI	CGCG	1 cut(s)	901
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	3 cut(s)	267, 360, 901
BstKTI	GATC	4 cut(s)	120, 259, 505, 853
BstMAI	GTCTC	6 cut(s)	39, 45, 173, 257, 329, 790
BstMBI	GATC	4 cut(s)	117, 256, 502, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 306, 773
BstNI	CCWGG	2 cut(s)	86, 761
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	84, 632, 759
BstUI	CGCG	1 cut(s)	901
BstV1I	GCAGC	3 cut(s)	28, 418, 555
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BsuRI	GGCC	4 cut(s)	473, 557, 632, 764
BtgI	CCRYGG	2 cut(s)	623, 771
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	6 cut(s)	199, 397, 520, 633, 807, 866
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	3 cut(s)	259, 295, 595
Cac8I	GCNNGC	3 cut(s)	102, 106, 697
CfoI	GCGC	3 cut(s)	267, 360, 901
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	246, 471
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	416, 551
CviAII	CATG	5 cut(s)	214, 457, 772, 857, 893
CviQI	GTAC	2 cut(s)	416, 551
DpnI	GATC	4 cut(s)	119, 258, 504, 852
DpnII	GATC	4 cut(s)	117, 256, 502, 850
DriI	GACNNNNNGTC	2 cut(s)	94, 136
EaeI	YGGCCR	2 cut(s)	630, 762
Eam1105I	GACNNNNNGTC	2 cut(s)	94, 136
Eco130I	CCWWGG	1 cut(s)	771
Eco24I	GRGCYC	1 cut(s)	588
Eco31I	GGTCTC	2 cut(s)	39, 45
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	460
Eco88I	CYCGRG	1 cut(s)	109
EcoO109I	RGGNCCY	2 cut(s)	246, 471
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	2 cut(s)	84, 759
EcoT14I	CCWWGG	1 cut(s)	771
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	5 cut(s)	217, 460, 775, 860, 896
FatI	CATG	5 cut(s)	213, 456, 771, 856, 892
FauI	CCCGC	1 cut(s)	688
FauNDI	CATATG	2 cut(s)	340, 451
Fnu4HI	GCNGC	4 cut(s)	17, 432, 569, 765
FokI	GGATG	6 cut(s)	206, 404, 507, 640, 794, 873
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	4 cut(s)	17, 432, 569, 765
FspBI	CTAG	1 cut(s)	881
GlaI	GCGC	3 cut(s)	266, 359, 900
GluI	GCNGC	4 cut(s)	17, 432, 569, 765
GsaI	CCCAGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	473, 557, 632, 764
HapII	CCGG	2 cut(s)	101, 633
HgaI	GACGC	1 cut(s)	890
HhaI	GCGC	3 cut(s)	267, 360, 901
Hin1II	CATG	5 cut(s)	217, 460, 775, 860, 896
Hin6I	GCGC	3 cut(s)	265, 358, 899
HinP1I	GCGC	3 cut(s)	265, 358, 899
HinfI	GANTC	3 cut(s)	92, 137, 663
HpaII	CCGG	2 cut(s)	101, 633
HphI	GGTGA	3 cut(s)	44, 198, 314
Hpy188I	TCNGA	3 cut(s)	374, 783, 906
Hpy188III	TCNNGA	5 cut(s)	170, 254, 478, 709, 811
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	5 cut(s)	29, 272, 335, 484, 568
HpyCH4III	ACNGT	2 cut(s)	599, 647
HpyCH4V	TGCA	7 cut(s)	16, 213, 219, 300, 309, 434, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 306, 773
Hsp92II	CATG	5 cut(s)	217, 460, 775, 860, 896
HspAI	GCGC	3 cut(s)	265, 358, 899
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	117, 256, 502, 850
LmnI	GCTCC	3 cut(s)	22, 40, 272
Lsp1109I	GCAGC	3 cut(s)	28, 418, 555
LweI	GCATC	4 cut(s)	169, 692, 851, 874
MaeI	CTAG	1 cut(s)	881
MalI	GATC	4 cut(s)	119, 258, 504, 852
MboI	GATC	4 cut(s)	117, 256, 502, 850
MboII	GAAGA	2 cut(s)	140, 845
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	5 cut(s)	197, 317, 368, 435, 481
MlyI	GAGTC	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	100
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	2 cut(s)	101, 633
MspR9I	CCNGG	3 cut(s)	86, 634, 761
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	2 cut(s)	86, 761
MvnI	CGCG	1 cut(s)	901
MwoI	GCNNNNNNNGC	3 cut(s)	22, 306, 773
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	634
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	2 cut(s)	340, 451
NdeII	GATC	4 cut(s)	117, 256, 502, 850
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	5 cut(s)	217, 460, 775, 860, 896
NlaIV	GGNNCC	4 cut(s)	24, 226, 472, 638
NspI	RCATGY	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	109
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	92, 663
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	18, 433, 570, 766
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	84, 759
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	2 cut(s)	84, 759
PspN4I	GGNNCC	4 cut(s)	24, 226, 472, 638
PspPI	GGNCC	2 cut(s)	246, 471
PspPPI	RGGWCCY	1 cut(s)	246
PspXI	VCTCGAGB	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	850
PsyI	GACNNNGTC	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	417, 552
RsaNI	GTAC	2 cut(s)	416, 551
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	4 cut(s)	17, 432, 569, 765
Sau3AI	GATC	4 cut(s)	117, 256, 502, 850
Sau96I	GGNCC	2 cut(s)	246, 471
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	86, 634, 761
SduI	GDGCHC	1 cut(s)	588
SetI	ASST	9 cut(s)	21, 34, 110, 135, 211, 248, 327, 433, 751
SfaNI	GCATC	4 cut(s)	169, 692, 851, 874
Sfr274I	CTCGAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	109, 134
SmoI	CTYRAG	2 cut(s)	109, 134
Sse9I	AATT	5 cut(s)	197, 317, 368, 435, 481
SsiI	CCGC	2 cut(s)	681, 765
SspMI	CTAG	1 cut(s)	881
StyD4I	CCNGG	3 cut(s)	84, 632, 759
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	2 cut(s)	599, 647
TaqI	TCGA	5 cut(s)	66, 110, 171, 255, 328
TaqII	GACCGA	1 cut(s)	63
TasI	AATT	5 cut(s)	197, 317, 368, 435, 481
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	2 cut(s)	92, 663
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	3 cut(s)	266, 302, 602
TseI	GCWGC	3 cut(s)	16, 431, 568
TspDTI	ATGAA	7 cut(s)	17, 210, 230, 474, 591, 845, 909
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	3 cut(s)	266, 302, 602
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	2 cut(s)	368, 481
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.