Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Reverse (-)

3316291 .. 3318761

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016027

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAAGGGGGAAGTGCAGCTAGAACCAGTTGTTGCGGAACGGGAACCGAACCCTAGTAGTGACTTGGACCCTCTGCTACAGAATACCAACCAGGACGACGAGTCGTCGTCTCCGGCGAGCTCCAGTGAGATTAGGAATGAAGACCTTGAGAATGGCTCCTCTATTGCTTGTTGTCGCATTTGCCTTGAAAGCGATGCTGAACCAGGGGATGAGTTGATTTCACCATGCTTGTGCAAAGGCACACAGCAGTTTGTGCATAGCTCCTGTCTTGATCACTGGCGCTCTGTTAAGGAAGGATTTGCTTTCTCGCACTGCACAACTTGCAAAGCCCAATTTCATCTTCGAGTTGAATCATATGAGGACAACTCTTGGCGTAAAATAAAATTCAGAATTTTTGTGGCAAGGGATGTTTTCCTTGTATTTGTGGCTGTACAAACAATAATTGCTGCAATTGGTGGCTTTGCATATCTGATGGACAAAGATGGCGCCTTCAGGAATTCATTCAGTGATGGTTGGGATCGTATCTTGTCAAAACACCCTATACCATTTTATTATTGCATAGGGGTCTTGGCGTTTTTTGTGCTGCTTGGGTTTTTTGGGCTTATACTACACTGTTCAGCCTTCAATAGCAATGACCCACGGATGGCTGGCTGCCAGAACTGTTGTTATGGATGGGGAATATTGGATTGTTTCCCTGCGTCTATGGAGGCATGCTTTGCCCTGGTTATTGTTTTTGTTGTCATCTTTGCTATTCTTGGCATAGCTTATGGTTTCCTGGCTGCTACTATGGCTATTCAGAGAATCTGGCAGAGACATTACCACATCCTGACCAAGAGGGAACTCACGAAGGAGTACATAGTGGAGGACCTTCATGGTTGTTACACCCCACCAAAGTTGGATCCTGAACATGAAGAGCGTCTGAAAATGCTCAAGTTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

314

Amino Acids

35.37

Weight (kDa)

5.38

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	58 - 108	7.3e-11	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	525, 893, 906
AcsI	RAATTY	3 cut(s)	383, 390, 496
AcuI	CTGAAG	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	2 cut(s)	432, 854
AfiI	CCNNNNNNNGG	1 cut(s)	643
AgsI	TTSAA	3 cut(s)	188, 350, 625
AhdI	GACNNNNNGTC	2 cut(s)	100, 103
AjnI	CCWGG	4 cut(s)	90, 202, 720, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	4 cut(s)	19, 120, 261, 764
AluI	AGCT	4 cut(s)	19, 120, 261, 764
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	2 cut(s)	114, 805
AlwI	GGATC	3 cut(s)	525, 893, 906
ApeKI	GCWGC	5 cut(s)	16, 446, 583, 651, 779
ApoI	RAATTY	3 cut(s)	383, 390, 496
Asp700I	GAANNNNTTC	1 cut(s)	500
AspLEI	GCGC	2 cut(s)	282, 488
AspS9I	GGNCC	2 cut(s)	67, 865
AsuHPI	GGTGA	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	67, 865
BamHI	GGATCC	1 cut(s)	898
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	5 cut(s)	28, 433, 570, 638, 766
BccI	CCATC	5 cut(s)	466, 476, 503, 637, 666
BciT130I	CCWGG	4 cut(s)	92, 204, 722, 776
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	114, 805
BfaI	CTAG	2 cut(s)	20, 54
BfmI	CTRYAG	1 cut(s)	77
BfoI	RGCGCY	2 cut(s)	283, 489
BisI	GCNGC	5 cut(s)	17, 447, 584, 652, 780
BlsI	GCNGC	5 cut(s)	18, 448, 585, 653, 781
Bme1390I	CCNGG	4 cut(s)	92, 204, 722, 776
Bme18I	GGWCC	2 cut(s)	67, 865
BmeRI	GACNNNNNGTC	2 cut(s)	100, 103
BmgT120I	GGNCC	2 cut(s)	67, 865
BmiI	GGNNCC	5 cut(s)	45, 69, 157, 487, 900
BmrFI	CCNGG	4 cut(s)	92, 204, 722, 776
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	4 cut(s)	140, 172, 350, 382
BpmI	CTGGAG	1 cut(s)	106
BpuEI	CTTGAG	2 cut(s)	167, 914
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	3 cut(s)	203, 638, 720
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse1I	ACTGG	3 cut(s)	26, 123, 281
Bse3DI	GCAATG	1 cut(s)	637
BseBI	CCWGG	4 cut(s)	92, 204, 722, 776
BseDI	CCNNGG	3 cut(s)	203, 638, 720
BseGI	GGATG	5 cut(s)	214, 412, 648, 677, 822
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	1 cut(s)	637
BseNI	ACTGG	3 cut(s)	26, 123, 281
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	5 cut(s)	28, 433, 570, 638, 766
BsgI	GTGCAG	2 cut(s)	35, 298
BshNI	GGYRCC	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	2 cut(s)	114, 805
BsmBI	CGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	271, 517, 898
BspACI	CCGC	1 cut(s)	35
BspLI	GGNNCC	5 cut(s)	45, 69, 157, 487, 900
BspPI	GGATC	3 cut(s)	525, 893, 906
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	637
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	3 cut(s)	26, 123, 281
BssECI	CCNNGG	3 cut(s)	203, 638, 720
BssMI	GATC	3 cut(s)	271, 517, 898
BssNI	GRCGYC	1 cut(s)	486
Bst2UI	CCWGG	4 cut(s)	92, 204, 722, 776
Bst4CI	ACNGT	2 cut(s)	614, 662
Bst6I	CTCTTC	1 cut(s)	906
BstACI	GRCGYC	1 cut(s)	486
BstAPI	GCANNNNNTGC	3 cut(s)	253, 321, 716
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	118, 649, 712
BstDSI	CCRYGG	1 cut(s)	638
BstF5I	GGATG	5 cut(s)	214, 412, 648, 677, 822
BstH2I	RGCGCY	2 cut(s)	283, 489
BstHHI	GCGC	2 cut(s)	282, 488
BstKTI	GATC	3 cut(s)	274, 520, 901
BstMAI	GTCTC	2 cut(s)	114, 805
BstMBI	GATC	3 cut(s)	271, 517, 898
BstMWI	GCNNNNNNNGC	5 cut(s)	189, 253, 321, 716, 788
BstNI	CCWGG	4 cut(s)	92, 204, 722, 776
BstNSI	RCATGY	1 cut(s)	714
BstSCI	CCNGG	4 cut(s)	90, 202, 720, 774
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	5 cut(s)	28, 433, 570, 638, 766
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BtgI	CCRYGG	1 cut(s)	638
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	5 cut(s)	214, 412, 648, 677, 822
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	5 cut(s)	130, 274, 310, 511, 610
Cac8I	GCNNGC	3 cut(s)	118, 649, 712
CfoI	GCGC	2 cut(s)	282, 488
Cfr13I	GGNCC	2 cut(s)	67, 865
CseI	GACGC	2 cut(s)	687, 905
Csp6I	GTAC	2 cut(s)	431, 853
CspCI	CAANNNNNGTGG	2 cut(s)	876, 911
CviAII	CATG	4 cut(s)	225, 711, 872, 908
CviQI	GTAC	2 cut(s)	431, 853
DinI	GGCGCC	1 cut(s)	487
DpnI	GATC	3 cut(s)	273, 519, 900
DpnII	GATC	3 cut(s)	271, 517, 898
DriI	GACNNNNNGTC	2 cut(s)	100, 103
Eam1104I	CTCTTC	1 cut(s)	906
Eam1105I	GACNNNNNGTC	2 cut(s)	100, 103
EarI	CTCTTC	1 cut(s)	906
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	2 cut(s)	67, 865
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	475
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	865
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	4 cut(s)	90, 202, 720, 774
EcoT38I	GRGCYC	1 cut(s)	122
EgeI	GGCGCC	1 cut(s)	487
EheI	GGCGCC	1 cut(s)	487
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	4 cut(s)	228, 714, 875, 911
FatI	CATG	4 cut(s)	224, 710, 871, 907
FauNDI	CATATG	1 cut(s)	355
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	5 cut(s)	17, 447, 584, 652, 780
FokI	GGATG	5 cut(s)	221, 419, 655, 684, 809
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	5 cut(s)	17, 447, 584, 652, 780
FspBI	CTAG	2 cut(s)	20, 54
GlaI	GCGC	2 cut(s)	281, 487
GluI	GCNGC	5 cut(s)	17, 447, 584, 652, 780
GsuI	CTGGAG	1 cut(s)	106
HaeII	RGCGCY	2 cut(s)	283, 489
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	2 cut(s)	687, 905
HhaI	GCGC	2 cut(s)	282, 488
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	4 cut(s)	228, 714, 875, 911
Hin6I	GCGC	2 cut(s)	280, 486
HinP1I	GCGC	2 cut(s)	280, 486
HinfI	GANTC	3 cut(s)	101, 350, 801
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	213
Hpy188I	TCNGA	4 cut(s)	389, 471, 798, 921
Hpy188III	TCNNGA	5 cut(s)	269, 493, 826, 844, 902
Hpy99I	CGWCG	2 cut(s)	101, 109
HpyAV	CCTTC	5 cut(s)	287, 499, 631, 841, 878
HpyCH4III	ACNGT	2 cut(s)	614, 662
HpyCH4V	TGCA	8 cut(s)	16, 234, 256, 315, 324, 449, 464, 558
HpyF10VI	GCNNNNNNNGC	5 cut(s)	189, 253, 321, 716, 788
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	4 cut(s)	228, 714, 875, 911
HspAI	GCGC	2 cut(s)	280, 486
KasI	GGCGCC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	271, 517, 898
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	3 cut(s)	125, 161, 266
Lsp1109I	GCAGC	5 cut(s)	28, 433, 570, 638, 766
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	20, 54
MaeIII	GTNAC	2 cut(s)	59, 878
MalI	GATC	3 cut(s)	273, 519, 900
MboI	GATC	3 cut(s)	271, 517, 898
MboII	GAAGA	3 cut(s)	152, 332, 923
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	6 cut(s)	332, 383, 390, 441, 450, 496
Mly113I	GGCGCC	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	876
MnlI	CCTC	6 cut(s)	81, 169, 352, 700, 828, 856
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	229
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	4 cut(s)	92, 204, 722, 776
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	4 cut(s)	92, 204, 722, 776
MwoI	GCNNNNNNNGC	5 cut(s)	189, 253, 321, 716, 788
NarI	GGCGCC	1 cut(s)	486
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	3 cut(s)	271, 517, 898
NlaIII	CATG	4 cut(s)	228, 714, 875, 911
NlaIV	GGNNCC	5 cut(s)	45, 69, 157, 487, 900
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	714
PaeI	GCATGC	1 cut(s)	714
PciSI	GCTCTTC	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	350, 801
PkrI	GCNGC	5 cut(s)	18, 448, 585, 653, 781
PleI	GAGTC	1 cut(s)	109
PluTI	GGCGCC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	865
Psp124BI	GAGCTC	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	865
Psp6I	CCWGG	4 cut(s)	90, 202, 720, 774
PspGI	CCWGG	4 cut(s)	90, 202, 720, 774
PspN4I	GGNNCC	5 cut(s)	45, 69, 157, 487, 900
PspPI	GGNCC	2 cut(s)	67, 865
PspPPI	RGGWCCY	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	898
RsaI	GTAC	2 cut(s)	432, 854
RsaNI	GTAC	2 cut(s)	431, 853
RseI	CAYNNNNRTG	1 cut(s)	229
SacI	GAGCTC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	5 cut(s)	17, 447, 584, 652, 780
Sau3AI	GATC	3 cut(s)	271, 517, 898
Sau96I	GGNCC	2 cut(s)	67, 865
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	4 cut(s)	92, 204, 722, 776
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	6 cut(s)	21, 122, 147, 263, 766, 870
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	77
SfoI	GGCGCC	1 cut(s)	487
SinI	GGWCC	2 cut(s)	67, 865
SmiMI	CAYNNNNRTG	1 cut(s)	229
SmlI	CTYRAG	2 cut(s)	146, 929
SmoI	CTYRAG	2 cut(s)	146, 929
SphI	GCATGC	1 cut(s)	714
Sse9I	AATT	6 cut(s)	332, 383, 390, 441, 450, 496
SsiI	CCGC	1 cut(s)	35
SspDI	GGCGCC	1 cut(s)	485
SspI	AATATT	1 cut(s)	681
SspMI	CTAG	2 cut(s)	20, 54
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	4 cut(s)	90, 202, 720, 774
TaaI	ACNGT	2 cut(s)	614, 662
TaqI	TCGA	1 cut(s)	343
TasI	AATT	6 cut(s)	332, 383, 390, 441, 450, 496
TatI	WGTACW	2 cut(s)	430, 852
TfiI	GAWTC	2 cut(s)	350, 801
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	5 cut(s)	130, 281, 317, 511, 617
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	5 cut(s)	16, 446, 583, 651, 779
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	6 cut(s)	17, 153, 326, 489, 860, 924
TspGWI	ACGGA	1 cut(s)	655
TspRI	CASTG	5 cut(s)	130, 281, 317, 511, 617
VpaK11BI	GGWCC	2 cut(s)	67, 865
XapI	RAATTY	3 cut(s)	383, 390, 496
XceI	RCATGY	1 cut(s)	714
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	2 cut(s)	20, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.