Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006633

Physical Location & Seq

Genomic Coordinates Forward (+)

20550722 .. 20554214

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G237300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAAGGAGAAGTGCAGCTAGAGCCAGCAGGTGAAACGGAACGAGACCCTACTGACGTGGACCCTCTGCTAGAGAACCAGGAAGATTCGTCACCTGGAAGCTCGACTGAGATTTACAATGAAGACCTCGAGTCTGGCTCTATTCCCTGTTGTCGCATTTGTCTTGAAACCGATGCTGAACCAGGGGATGAATTGATTTCACCTTGCATGTGTAAAGGCACCCAGCAGTTTGTTCATAGCTCCTGTCTTGACCACTGGCGCTCTGTTAAGGAGGGATTTGCTTTCTCACACTGCACAACTTGCAAAGCCCAATTTCACCTTCGAGTTGAATCATATGAGGACAATTCTTGGCGTAAAATAAAATTCAGAGTTTTCGTTGCAAGGGATGTTTTCCTTGTATTTTTAGCTGTACAATCAGTCATTGCTGCAATTGGTGGCTTTGCGTATGTCATGGACAAAGATGGTGCCTTCAGGAATTCATTTAGTGATGGTTGGGATCGTATCTTGTCAAAACATCCTATACCATTTTATTATTGTATAGGGGTACTGGCCTTTTTTGTGCTGCTTGGATTTTTTGGGCTTATACTACACTGTTCATCCCTCAATAGCAATGACCCAAGAATGGCTGGCTGCCAGAATTGTTGTTATGGTTGGGGAATCTTGGATTGTTTCCCTGCGTCTATGGAGGCTTGCTTTGCCTTAGTTATCGTTTTTGTTGTCATATTTGCCATACTTGGCATAGCTTATGGTTTCCTTGCTGCTACCATGGCTATTCAGAGGATCTGGCAGAGACATTATCACATCCTGACCAAGAGGGAACTCACAAAGGAGTACATAGTGGAGGATCTTCATGGATGTTATACCCCACCAAAATTGGATCCAGAACATGAAGCACGTCTGAAAATGCTCAAGTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

307

Amino Acids

34.56

Weight (kDa)

5.28

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11020
fragaria_vesca	FvH4_1g03950 FvH4_1g03950 FvH4_1g03950 FvH4_6g51470
malus_domestica	MD02G1038000.v1.1 MD15G1178300.v1.1
prunus_persica	Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1 Prupe.7G237300_v2.0.a1
pyrus_communis	pycom02g03110 pycom15g16000
rosa_chinensis	RchiOBHm_Chr2g0089431
rosa_laevigata	RLG00000016027
rosa_multiflora	Rmu_sc0000197.1_g000010 Rmu_sc0000197.1_g000012
rosa_roxburghii	Rroxscaffold_2G00151940 Rroxscaffold_5G00344790
rosa_rugosa	Rorug02G0000800 Rorug02G0000800
rosa_samantha	Rh2AG045900 Rh2BG044400 Rh2CG046300 Rh2DG045800
rosa_wichuraiana	Rw2G003670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	20
AccB1I	GGYRCC	2 cut(s)	218, 464
AclWI	GGATC	5 cut(s)	504, 788, 852, 872, 885
AcsI	RAATTY	2 cut(s)	362, 475
AcuI	CTGAAG	1 cut(s)	454
AfaI	GTAC	3 cut(s)	411, 546, 833
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	2 cut(s)	167, 329
AhdI	GACNNNNNGTC	1 cut(s)	130
AjiI	CACGTC	2 cut(s)	58, 896
AjnI	CCWGG	3 cut(s)	78, 94, 181
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	5 cut(s)	19, 102, 240, 407, 743
AluI	AGCT	5 cut(s)	19, 102, 240, 407, 743
Alw26I	GTCTC	2 cut(s)	39, 784
AlwI	GGATC	5 cut(s)	504, 788, 852, 872, 885
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	5 cut(s)	16, 425, 562, 630, 758
ApoI	RAATTY	2 cut(s)	362, 475
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	44, 84, 192, 308
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	877
BanI	GGYRCC	2 cut(s)	218, 464
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	5 cut(s)	28, 412, 549, 617, 745
BccI	CCATC	2 cut(s)	455, 482
BciT130I	CCWGG	3 cut(s)	80, 96, 183
BcoDI	GTCTC	2 cut(s)	39, 784
BfaI	CTAG	2 cut(s)	20, 71
BfoI	RGCGCY	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	20
BisI	GCNGC	5 cut(s)	17, 426, 563, 631, 759
BlsI	GCNGC	5 cut(s)	18, 427, 564, 632, 760
Bme1390I	CCNGG	3 cut(s)	80, 96, 183
Bme18I	GGWCC	1 cut(s)	61
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	128
BmgBI	CACGTC	2 cut(s)	58, 896
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	4 cut(s)	63, 220, 466, 879
BmrFI	CCNGG	3 cut(s)	80, 96, 183
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpuEI	CTTGAG	1 cut(s)	893
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	182, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse1I	ACTGG	2 cut(s)	260, 552
Bse3DI	GCAATG	2 cut(s)	420, 616
BseBI	CCWGG	3 cut(s)	80, 96, 183
BseDI	CCNNGG	2 cut(s)	182, 765
BseGI	GGATG	6 cut(s)	193, 391, 514, 596, 801, 860
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMI	GCAATG	2 cut(s)	420, 616
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	260, 552
BseXI	GCAGC	5 cut(s)	28, 412, 549, 617, 745
BseYI	CCCAGC	1 cut(s)	222
BsgI	GTGCAG	2 cut(s)	35, 277
BshFI	GGCC	1 cut(s)	551
BshNI	GGYRCC	2 cut(s)	218, 464
BsiHKCI	CYCGRG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	2 cut(s)	39, 784
BsnI	GGCC	1 cut(s)	551
Bso31I	GGTCTC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	409
Bsp143I	GATC	4 cut(s)	496, 780, 844, 877
Bsp19I	CCATGG	1 cut(s)	765
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	4 cut(s)	63, 220, 466, 879
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	5 cut(s)	504, 788, 852, 872, 885
BspT107I	GGYRCC	2 cut(s)	218, 464
BspTNI	GGTCTC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	420, 616
BsrGI	TGTACA	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	260, 552
BssECI	CCNNGG	2 cut(s)	182, 765
BssMI	GATC	4 cut(s)	496, 780, 844, 877
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	3 cut(s)	80, 96, 183
Bst4CI	ACNGT	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	409
BstC8I	GCNNGC	3 cut(s)	27, 628, 691
BstDEI	CTNAG	2 cut(s)	108, 700
BstDSI	CCRYGG	1 cut(s)	765
BstF5I	GGATG	6 cut(s)	193, 391, 514, 596, 801, 860
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	4 cut(s)	499, 783, 847, 880
BstMAI	GTCTC	2 cut(s)	39, 784
BstMBI	GATC	4 cut(s)	496, 780, 844, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 300, 695, 767
BstNI	CCWGG	3 cut(s)	80, 96, 183
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	3 cut(s)	78, 94, 181
BstV1I	GCAGC	5 cut(s)	28, 412, 549, 617, 745
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	3 cut(s)	780, 844, 877
BstYI	RGATCY	3 cut(s)	780, 844, 877
BsuRI	GGCC	1 cut(s)	551
BtgI	CCRYGG	1 cut(s)	765
BtrI	CACGTC	2 cut(s)	58, 896
BtsCI	GGATG	6 cut(s)	193, 391, 514, 596, 801, 860
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	3 cut(s)	253, 289, 589
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	3 cut(s)	27, 628, 691
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	1 cut(s)	666
Csp6I	GTAC	3 cut(s)	410, 545, 832
CspCI	CAANNNNNGTGG	2 cut(s)	855, 890
CviAII	CATG	5 cut(s)	208, 451, 766, 851, 887
CviQI	GTAC	3 cut(s)	410, 545, 832
DdeI	CTNAG	2 cut(s)	108, 700
DpnI	GATC	4 cut(s)	498, 782, 846, 879
DpnII	GATC	4 cut(s)	496, 780, 844, 877
DriI	GACNNNNNGTC	1 cut(s)	130
Eam1105I	GACNNNNNGTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	765
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	3 cut(s)	78, 94, 181
EcoT14I	CCWWGG	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	765
FaeI	CATG	5 cut(s)	211, 454, 769, 854, 890
FatI	CATG	5 cut(s)	207, 450, 765, 850, 886
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	5 cut(s)	17, 426, 563, 631, 759
FokI	GGATG	6 cut(s)	200, 398, 501, 583, 788, 867
Fsp4HI	GCNGC	5 cut(s)	17, 426, 563, 631, 759
FspBI	CTAG	2 cut(s)	20, 71
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	5 cut(s)	17, 426, 563, 631, 759
GsaI	CCCAGC	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	551
HgaI	GACGC	1 cut(s)	666
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	5 cut(s)	211, 454, 769, 854, 890
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	4 cut(s)	86, 131, 329, 657
HphI	GGTGA	4 cut(s)	44, 84, 192, 308
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	368, 777, 900
Hpy188III	TCNNGA	5 cut(s)	164, 248, 472, 805, 881
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	329, 478
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	2 cut(s)	57, 895
HpyCH4V	TGCA	6 cut(s)	16, 207, 294, 303, 380, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 300, 695, 767
HpyF3I	CTNAG	2 cut(s)	108, 700
HpySE526I	ACGT	2 cut(s)	57, 895
Hsp92II	CATG	5 cut(s)	211, 454, 769, 854, 890
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	496, 780, 844, 877
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	5 cut(s)	28, 412, 549, 617, 745
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	20, 71
MaeII	ACGT	2 cut(s)	57, 895
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	4 cut(s)	498, 782, 846, 879
MboI	GATC	4 cut(s)	496, 780, 844, 877
MboII	GAAGA	3 cut(s)	95, 134, 839
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	3 cut(s)	780, 844, 877
MluCI	AATT	8 cut(s)	191, 311, 343, 362, 429, 475, 637, 872
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	9 cut(s)	75, 137, 265, 331, 611, 679, 771, 807, 835
MseI	TTAA	1 cut(s)	267
MspR9I	CCNGG	3 cut(s)	80, 96, 183
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	3 cut(s)	80, 96, 183
MwoI	GCNNNNNNNGC	4 cut(s)	22, 300, 695, 767
NcoI	CCATGG	1 cut(s)	765
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	4 cut(s)	496, 780, 844, 877
NlaIII	CATG	5 cut(s)	211, 454, 769, 854, 890
NlaIV	GGNNCC	4 cut(s)	63, 220, 466, 879
NmuCI	GTSAC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	20
PfeI	GAWTC	3 cut(s)	86, 329, 657
PkrI	GCNGC	5 cut(s)	18, 427, 564, 632, 760
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	78, 94, 181
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	3 cut(s)	78, 94, 181
PspN4I	GGNNCC	4 cut(s)	63, 220, 466, 879
PspPI	GGNCC	1 cut(s)	61
PspXI	VCTCGAGB	1 cut(s)	128
PsuI	RGATCY	3 cut(s)	780, 844, 877
RsaI	GTAC	3 cut(s)	411, 546, 833
RsaNI	GTAC	3 cut(s)	410, 545, 832
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	5 cut(s)	17, 426, 563, 631, 759
Sau3AI	GATC	4 cut(s)	496, 780, 844, 877
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	3 cut(s)	80, 96, 183
SfaNI	GCATC	1 cut(s)	163
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	128, 908
SmoI	CTYRAG	2 cut(s)	128, 908
Sse9I	AATT	8 cut(s)	191, 311, 343, 362, 429, 475, 637, 872
SspMI	CTAG	2 cut(s)	20, 71
StyD4I	CCNGG	3 cut(s)	78, 94, 181
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	2 cut(s)	60, 898
TaqI	TCGA	3 cut(s)	104, 129, 322
TasI	AATT	8 cut(s)	191, 311, 343, 362, 429, 475, 637, 872
TatI	WGTACW	2 cut(s)	409, 831
TfiI	GAWTC	3 cut(s)	86, 329, 657
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	3 cut(s)	260, 296, 596
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	5 cut(s)	16, 425, 562, 630, 758
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	8 cut(s)	17, 135, 204, 224, 468, 585, 839, 903
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	3 cut(s)	260, 296, 596
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	2 cut(s)	362, 475
XceI	RCATGY	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	2 cut(s)	20, 71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.