Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007660

Physical Location & Seq

Genomic Coordinates Forward (+)

3702608 .. 3703779

Gene Structure 1172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCTGATCAACAGCTTGAAACAGAGATCAACTTCTGGGGAGAGACTTCAGAAGAAGATTACTTTAATCTCAAAGGCATCATCGGCTCCAAATCTTTCTTCACTTCCCCTCGAGGTCTCAACCTCTTCACTCGTTCATGGCTTCCCTCTTCCTCTTCTCCGCCACGTGGTCTCATCTTCATGGTCCATGGCTACGGCAATGACGTCAGCTGGACTTTCCAGTCCACTCCCATTTTTCTTGCTCAGATGGGTTTCGCTTGCTTTGCTCTCGACATCGAAGGTCATGGCCGATCTGACGGTGTCCGCGCCTATGTTCCCTCCGTAGATCTAGTCGTCGATGACATCATCTCTTTCTTTAATTCGATTAAGCAAAACCCTAAATTTCAAGGCTTACCTCGGTTTCTCTTCGGAGAATCAATGGGCGGTGCGATTTGTCTTTTGATCCAATTCGCTGATCCGTTAGGGTTTGATGGAGCGGTTTTGGTTGCTCCCATGTGTAAAATCTCGGACAAGGTGAGACCTAAATGGCCGGTTGATCAGTTTCTGATTATGATCTCAAGATTCTTGCCGACTTGGGCGATTGTTCCGACGGAAGATCTGTTGGAGAAGTCGATCAAAGTTGAAGAGAAGAAACCGATTGCCAAGAGGAATCCGATGAGGTACAATGAGAAACCGCGGTTAGGTACAGTGATGGAGCTACTTAGGGTTACTGATTACTTAGGGAAGAAGCTAAAAGATGTTAGCATTCCCTTCATTATTGTGCACGGAAGTGCAGATGCTGTGACTGATCCTGAAGTGAGCAGAGAGTTGTACGAACATGCTAAGAGCAAAGATAAGACATTGAAGATCTATGACGGGATGATGCATTCGATGTTGTTCGGTGAACCCGACGACAACATTGAGATTGTTCGTAAAGATATTGTTAGCTGGTTGAATGATAGATGTGGTGGAGACAAAACCAAAACCCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

324

Amino Acids

36.56

Weight (kDa)

5.83

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	54 - 296	1.5e-58	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	58 - 294	2.2e-08	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	59 - 297	4.7e-13	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11090
fragaria_vesca	FvH4_3g04590
malus_domestica	MD10G1300100.v1.1
prunus_persica	Prupe.4G040700_v2.0.a1
pyrus_communis	pycom10g25280
rosa_chinensis	RchiOBHm_Chr1g0341431 RchiOBHm_Chr2g0096241 RchiOBHm_Chr2g0170991 RchiOBHm_Chr5g0007531 RchiOBHm_Chr5g0049361
rosa_laevigata	RLG00000013401 RLG00000031465
rosa_multiflora	Rmu_co8522595.1_g000002 Rmu_sc0009463.1_g000005 Rmu_sc0009463.1_g000007 Rmu_ssc0000182.1_g000012
rosa_roxburghii	Rroxscaffold_1G00067270 Rroxscaffold_2G00139780
rosa_rugosa	Rorug04G0428100.1
rosa_samantha	Rh4CG004300 Rh5BG053500 Rh5CG063300 Rh5DG052500
rosa_wichuraiana	Rw5G005430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AatII	GACGTC	1 cut(s)	207
AbsI	CCTCGAGG	1 cut(s)	111
AccBSI	CCGCTC	1 cut(s)	476
AccII	CGCG	2 cut(s)	306, 676
AciI	CCGC	6 cut(s)	161, 304, 423, 476, 674, 676
AclWI	GGATC	3 cut(s)	436, 449, 782
AcoI	YGGCCR	2 cut(s)	286, 527
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	2 cut(s)	33, 813
AcvI	CACGTG	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	3 cut(s)	662, 685, 812
AfiI	CCNNNNNNNGG	2 cut(s)	167, 680
AgsI	TTSAA	5 cut(s)	20, 386, 623, 844, 934
AjnI	CCWGG	1 cut(s)	966
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	768
AluBI	AGCT	5 cut(s)	16, 210, 697, 730, 927
AluI	AGCT	5 cut(s)	16, 210, 697, 730, 927
Alw21I	GWGCWC	1 cut(s)	765
Alw26I	GTCTC	5 cut(s)	38, 122, 176, 511, 945
Alw44I	GTGCAC	1 cut(s)	761
AlwI	GGATC	3 cut(s)	436, 449, 782
AlwNI	CAGNNNCTG	2 cut(s)	544, 779
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	2 cut(s)	286, 527
ApaLI	GTGCAC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	526, 893
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	765
BbrPI	CACGTG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	765
BccI	CCATC	3 cut(s)	241, 464, 685
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	968
BclI	TGATCA	2 cut(s)	7, 535
BcoDI	GTCTC	5 cut(s)	38, 122, 176, 511, 945
BfaI	CTAG	1 cut(s)	329
BglII	AGATCT	3 cut(s)	325, 595, 846
Bme1390I	CCNGG	1 cut(s)	968
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	968
BmsI	GCATC	3 cut(s)	87, 766, 852
BpuEI	CTTGAG	1 cut(s)	541
BsaAI	YACGTR	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	3 cut(s)	122, 176, 511
BsaJI	CCNNGG	4 cut(s)	187, 395, 674, 966
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 680
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	968
BseDI	CCNNGG	4 cut(s)	187, 395, 674, 966
BseGI	GGATG	1 cut(s)	864
BseJI	GATNNNNATC	1 cut(s)	551
BseLI	CCNNNNNNNGG	2 cut(s)	167, 680
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	765
BsgI	GTGCAG	1 cut(s)	792
Bsh1236I	CGCG	2 cut(s)	306, 676
BshFI	GGCC	2 cut(s)	288, 529
BsiHKAI	GWGCWC	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	530
BslI	CCNNNNNNNGG	2 cut(s)	167, 680
BsmAI	GTCTC	5 cut(s)	38, 122, 176, 511, 945
BsmI	GAATGC	2 cut(s)	744, 865
BsnI	GGCC	2 cut(s)	288, 529
Bso31I	GGTCTC	3 cut(s)	122, 176, 511
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	6 cut(s)	161, 304, 423, 476, 674, 676
BspANI	GGCC	2 cut(s)	288, 529
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	2 cut(s)	306, 676
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	436, 449, 782
BspTNI	GGTCTC	3 cut(s)	122, 176, 511
BsrBI	CCGCTC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	4 cut(s)	187, 395, 674, 966
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	968
Bst4CI	ACNGT	2 cut(s)	299, 688
Bst6I	CTCTTC	5 cut(s)	131, 154, 160, 410, 618
BstACI	GRCGYC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	4 cut(s)	243, 701, 718, 822
BstDSI	CCRYGG	2 cut(s)	187, 674
BstF5I	GGATG	1 cut(s)	864
BstFNI	CGCG	2 cut(s)	306, 676
BstHHI	GCGC	1 cut(s)	308
BstMAI	GTCTC	5 cut(s)	38, 122, 176, 511, 945
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 263
BstNI	CCWGG	1 cut(s)	968
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	1 cut(s)	966
BstSLI	GKGCMC	1 cut(s)	765
BstUI	CGCG	2 cut(s)	306, 676
BstX2I	RGATCY	3 cut(s)	325, 595, 846
BstYI	RGATCY	3 cut(s)	325, 595, 846
BsuRI	GGCC	2 cut(s)	288, 529
BtgI	CCRYGG	2 cut(s)	187, 674
BtsCI	GGATG	1 cut(s)	864
BtsIMutI	CAGTG	1 cut(s)	693
Cac8I	GCNNGC	1 cut(s)	259
CaiI	CAGNNNCTG	2 cut(s)	544, 779
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	184
Cfr42I	CCGCGG	1 cut(s)	677
Csp6I	GTAC	3 cut(s)	661, 684, 811
CviAII	CATG	6 cut(s)	138, 181, 188, 284, 493, 818
CviQI	GTAC	3 cut(s)	661, 684, 811
DdeI	CTNAG	4 cut(s)	243, 701, 718, 822
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	2 cut(s)	286, 527
Eam1104I	CTCTTC	5 cut(s)	131, 154, 160, 410, 618
EarI	CTCTTC	5 cut(s)	131, 154, 160, 410, 618
EciI	GGCGGA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	187
Eco31I	GGTCTC	3 cut(s)	122, 176, 511
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	2 cut(s)	33, 813
Eco72I	CACGTG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	966
EcoT14I	CCWWGG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	6 cut(s)	141, 184, 191, 287, 496, 821
FaiI	YATR	9 cut(s)	139, 182, 189, 285, 312, 494, 551, 819, 852
FatI	CATG	6 cut(s)	137, 180, 187, 283, 492, 817
FbaI	TGATCA	2 cut(s)	7, 535
FokI	GGATG	1 cut(s)	871
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	307
HaeIII	GGCC	2 cut(s)	288, 529
HapII	CCGG	1 cut(s)	530
HhaI	GCGC	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	6 cut(s)	141, 184, 191, 287, 496, 821
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	3 cut(s)	413, 561, 649
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	2 cut(s)	526, 893
Hpy166II	GTNNAC	3 cut(s)	225, 763, 884
Hpy188I	TCNGA	9 cut(s)	7, 52, 246, 295, 410, 508, 546, 588, 654
Hpy188III	TCNNGA	3 cut(s)	269, 558, 791
Hpy8I	GTNNAC	3 cut(s)	225, 763, 884
Hpy99I	CGWCG	3 cut(s)	338, 592, 893
HpyAV	CCTTC	2 cut(s)	272, 760
HpyCH4III	ACNGT	2 cut(s)	299, 688
HpyCH4IV	ACGT	2 cut(s)	166, 204
HpyCH4V	TGCA	3 cut(s)	763, 773, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 263
HpyF3I	CTNAG	4 cut(s)	243, 701, 718, 822
HpySE526I	ACGT	2 cut(s)	166, 204
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	6 cut(s)	141, 184, 191, 287, 496, 821
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	2 cut(s)	7, 535
KspI	CCGCGG	1 cut(s)	677
LmnI	GCTCC	4 cut(s)	92, 473, 493, 694
LpnPI	CCDG	7 cut(s)	22, 196, 233, 543, 804, 913, 953
LweI	GCATC	3 cut(s)	87, 766, 852
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	166, 204
MaeIII	GTNAC	2 cut(s)	706, 781
MbiI	CCGCTC	1 cut(s)	476
MflI	RGATCY	3 cut(s)	325, 595, 846
MhlI	GDGCHC	1 cut(s)	765
MluCI	AATT	3 cut(s)	358, 380, 446
MmeI	TCCRAC	2 cut(s)	582, 611
MnlI	CCTC	9 cut(s)	107, 120, 134, 157, 163, 328, 405, 639, 651
Mph1103I	ATGCAT	1 cut(s)	867
MseI	TTAA	3 cut(s)	66, 357, 366
MslI	CAYNNNNRTG	3 cut(s)	179, 758, 768
MspA1I	CMGCKG	2 cut(s)	210, 676
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	968
Mva1269I	GAATGC	2 cut(s)	744, 865
MvaI	CCWGG	1 cut(s)	968
MvnI	CGCG	2 cut(s)	306, 676
MwoI	GCNNNNNNNGC	2 cut(s)	84, 263
NcoI	CCATGG	1 cut(s)	187
NlaIII	CATG	6 cut(s)	141, 184, 191, 287, 496, 821
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	1 cut(s)	821
OliI	CACNNNNGTG	1 cut(s)	768
PaeR7I	CTCGAG	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 885
PctI	GAATGC	2 cut(s)	744, 865
PfeI	GAWTC	3 cut(s)	413, 561, 649
PflFI	GACNNNGTC	1 cut(s)	299
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	966
PspCI	CACGTG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	966
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	111
PstNI	CAGNNNCTG	2 cut(s)	544, 779
PsuI	RGATCY	3 cut(s)	325, 595, 846
PsyI	GACNNNGTC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	210
RsaI	GTAC	3 cut(s)	662, 685, 812
RsaNI	GTAC	3 cut(s)	661, 684, 811
RseI	CAYNNNNRTG	3 cut(s)	179, 758, 768
SacII	CCGCGG	1 cut(s)	677
SaqAI	TTAA	3 cut(s)	66, 357, 366
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	968
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	3 cut(s)	87, 766, 852
Sfr274I	CTCGAG	1 cut(s)	111
Sfr303I	CCGCGG	1 cut(s)	677
SgrBI	CCGCGG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	3 cut(s)	179, 758, 768
SmlI	CTYRAG	2 cut(s)	111, 556
SmoI	CTYRAG	2 cut(s)	111, 556
Sse9I	AATT	3 cut(s)	358, 380, 446
SsiI	CCGC	6 cut(s)	161, 304, 423, 476, 674, 676
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	966
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	299, 688
TaiI	ACGT	2 cut(s)	169, 207
TaqI	TCGA	7 cut(s)	112, 270, 276, 336, 362, 611, 869
TasI	AATT	3 cut(s)	358, 380, 446
TfiI	GAWTC	3 cut(s)	413, 561, 649
Tru1I	TTAA	3 cut(s)	66, 357, 366
Tru9I	TTAA	3 cut(s)	66, 357, 366
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	1 cut(s)	781
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	3 cut(s)	126, 169, 742
TspGWI	ACGGA	4 cut(s)	310, 447, 605, 780
TspRI	CASTG	1 cut(s)	693
Tth111I	GACNNNGTC	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	821
XhoI	CTCGAG	1 cut(s)	111
XspI	CTAG	1 cut(s)	329
ZraI	GACGTC	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.